AT1G76660

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012074
Physical Location & Seq
Reverse (-)
28768759 .. 28771538
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76660.1

Sequence Viewer

Length: 1296 bp
ATGGGCTCAGAGCAGGATCAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTTTCAAGTCACAAAAAGGTGGAAAAAGAATTGTACCTGCTTCTCGCATTCCTGAAGGTGGCAATGTCTCAGCTTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGATTAATCTATCACTATTGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCAGCTCTTCCTTCAACTACTCAGTCTCCAAACTGCTACTTATCTCTGGCTGCAAATTCACCGGGAGGTCCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTAGTCTCACCGCCTGTTTTCTCTACTTTCACCACCGAGCCATCGACTGCTCCTTTCACTCCTCCTCCAGAGCTTGCACGTCTGACTGCCCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCCTCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAATGATCTTCAAGCTACTTATTCTCTTTATCCCGGAAGTCCAGCCAGTGCTCTTAGATCACCAATCTCTCGGGCTTCGGGAGATGGGTTATTGTCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAACACATTCGGGTATGACACAAATGGAGTCTCAACACCTTTGCAGGAGTCAAACTTCTTCTGTCCTGAAACTTTTGCCAAGTTTTACCTGGATCACGACCCTTCAGTTCCTCAAAACGGTGGAAGATTAAGCGTGTCGAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAACCAGAATAGGCAGAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGGGCGTCCTTTGGTTTTAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGATGTGATGGATGGGTCTTTTAACACATCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTCAGAAGAGAAGCAAATTTGCTGAGTCAAACAAGCCCCAAATCAGAAGCCGATCTTGATTCACAAGTTGTAGACTTCCAATCACCAAAGTCATCAAATAGCTACAAAGATCACAAACAAAGAAACCGGATCCATGCGGATGAAGAGGCTTTATTGTCGAGAGTGGGGTCTGTAAAAGGAAGCAGAAGCTATCATATTTCAAGCTCTGATGCAGAGGTCGAGTACAGAAGAGGAAGAAGCTTAAGGGAAAGCAGAGAGAACAGACACAGGAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

46.43

Weight (kDa)

7.65

Isoelectric Point (pI)

68.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 1089
AciI CCGC 2 cut(s) 368, 1154
AclWI GGATC 5 cut(s) 24, 504, 756, 1141, 1154
AcsI RAATTY 2 cut(s) 295, 1033
AcuI CTGAAG 2 cut(s) 132, 744
AcyI GRCGYC 1 cut(s) 899
AfaI GTAC 3 cut(s) 93, 465, 1241
AfiI CCNNNNNNNGG 5 cut(s) 116, 629, 773, 821, 1004
AflII CTTAAG 1 cut(s) 1258
AgsI TTSAA 4 cut(s) 64, 255, 536, 1218
AhlI ACTAGT 1 cut(s) 935
AjiI CACGTC 1 cut(s) 437
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 959
Alw21I GWGCWC 2 cut(s) 151, 577
Alw26I GTCTC 4 cut(s) 130, 270, 367, 691
AlwI GGATC 5 cut(s) 24, 504, 756, 1141, 1154
Ama87I CYCGRG 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 179, 290
ApoI RAATTY 2 cut(s) 295, 1033
AseI ATTAAT 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 308, 335
AsuC2I CCSGG 2 cut(s) 303, 558
AsuHPI GGTGA 7 cut(s) 226, 291, 357, 379, 447, 576, 1092
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 2 cut(s) 308, 335
BamHI GGATCC 1 cut(s) 1146
BanII GRGCYC 2 cut(s) 8, 151
Bbv12I GWGCWC 2 cut(s) 151, 577
BbvI GCAGC 2 cut(s) 166, 277
BccI CCATC 5 cut(s) 406, 602, 958, 962, 998
BcgI CGANNNNNNTGC 2 cut(s) 646, 680
BciT130I CCWGG 1 cut(s) 746
BciVI GTATCC 1 cut(s) 822
BcnI CCSGG 2 cut(s) 303, 558
BcoDI GTCTC 4 cut(s) 130, 270, 367, 691
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 1 cut(s) 936
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 1258
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 822
BisI GCNGC 2 cut(s) 180, 291
BlsI GCNGC 2 cut(s) 181, 292
Bme1390I CCNGG 3 cut(s) 303, 558, 746
Bme18I GGWCC 2 cut(s) 308, 335
BmeT110I CYCGRG 1 cut(s) 594
BmgBI CACGTC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 308, 335
BmiI GGNNCC 3 cut(s) 210, 839, 1148
BmrFI CCNGG 3 cut(s) 303, 558, 746
BmsI GCATC 1 cut(s) 1216
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 2 cut(s) 485, 625
BpuMI CCSGG 2 cut(s) 303, 558
BsaBI GATNNNNATC 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 899
BsaJI CCNNGG 1 cut(s) 492
BsaWI WCCGGW 1 cut(s) 1143
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 406, 436
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 629, 773, 821, 1004
Bse1I ACTGG 2 cut(s) 337, 570
Bse3DI GCAATG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 973, 1162
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 5 cut(s) 116, 629, 773, 821, 1004
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 5 cut(s) 21, 141, 275, 1031, 1033
BseNI ACTGG 2 cut(s) 337, 570
BseRI GAGGAG 3 cut(s) 408, 411, 893
BseXI GCAGC 2 cut(s) 166, 277
BsgI GTGCAG 1 cut(s) 936
BsiHKAI GWGCWC 2 cut(s) 151, 577
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 3 cut(s) 302, 558, 1144
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 5 cut(s) 116, 629, 773, 821, 1004
BsmAI GTCTC 4 cut(s) 130, 270, 367, 691
BsmFI GGGAC 1 cut(s) 846
BsmI GAATGC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 594
Bsp1286I GDGCHC 3 cut(s) 8, 151, 577
Bsp143I GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 2 cut(s) 368, 1154
BspCNI CTCAG 5 cut(s) 20, 140, 274, 1032, 1032
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 210, 839, 1148
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 5 cut(s) 24, 504, 756, 1141, 1154
BspQI GCTCTTC 1 cut(s) 252
BspTI CTTAAG 1 cut(s) 1258
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 2 cut(s) 337, 570
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
BssNI GRCGYC 1 cut(s) 899
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 4 cut(s) 252, 1018, 1155, 1240
BstACI GRCGYC 1 cut(s) 899
BstAFI CTTAAG 1 cut(s) 1258
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 6 cut(s) 7, 127, 261, 578, 1019, 1040
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 2 cut(s) 973, 1162
BstKTI GATC 9 cut(s) 19, 499, 532, 584, 751, 954, 1072, 1129, 1149
BstMAI GTCTC 4 cut(s) 130, 270, 367, 691
BstMBI GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
BstMWI GCNNNNNNNGC 2 cut(s) 155, 896
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 301, 556, 744
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 166, 277
BstX2I RGATCY 2 cut(s) 496, 1146
BstYI RGATCY 2 cut(s) 496, 1146
BsuI GTATCC 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 1017
BtrI CACGTC 1 cut(s) 437
BtsCI GGATG 2 cut(s) 973, 1162
BtsIMutI CAGTG 3 cut(s) 330, 577, 954
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 308, 335
CseI GACGC 1 cut(s) 888
Csp6I GTAC 3 cut(s) 92, 464, 1240
CviAII CATG 4 cut(s) 347, 493, 874, 1151
CviQI GTAC 3 cut(s) 92, 464, 1240
DdeI CTNAG 6 cut(s) 7, 127, 261, 578, 1019, 1040
DpnI GATC 9 cut(s) 18, 498, 531, 583, 750, 953, 1071, 1128, 1148
DpnII GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
Eam1104I CTCTTC 4 cut(s) 252, 1018, 1155, 1240
EarI CTCTTC 4 cut(s) 252, 1018, 1155, 1240
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 2 cut(s) 8, 151
Eco47I GGWCC 2 cut(s) 308, 335
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 132, 744
Eco88I CYCGRG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 8, 151
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 4 cut(s) 350, 496, 877, 1154
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 1 cut(s) 846
FatI CATG 4 cut(s) 346, 492, 873, 1150
FauNDI CATATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 1089
Fnu4HI GCNGC 2 cut(s) 180, 291
FokI GGATG 2 cut(s) 980, 1169
FriOI GRGCYC 2 cut(s) 8, 151
Fsp4HI GCNGC 2 cut(s) 180, 291
FspBI CTAG 1 cut(s) 936
GluI GCNGC 2 cut(s) 180, 291
GsuI CTGGAG 1 cut(s) 408
HapII CCGG 3 cut(s) 302, 558, 1144
HgaI GACGC 1 cut(s) 888
Hin1I GRCGYC 1 cut(s) 899
Hin1II CATG 4 cut(s) 350, 496, 877, 1154
HindIII AAGCTT 3 cut(s) 888, 1013, 1255
HinfI GANTC 6 cut(s) 650, 684, 704, 800, 1042, 1076
HpaII CCGG 3 cut(s) 302, 558, 1144
HphI GGTGA 7 cut(s) 226, 291, 357, 379, 447, 576, 1092
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188I TCNGA 7 cut(s) 10, 21, 441, 805, 1022, 1063, 1225
Hpy8I GTNNAC 1 cut(s) 1090
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 8 cut(s) 107, 225, 241, 261, 321, 459, 768, 790
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 6 cut(s) 182, 293, 434, 700, 917, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 896
HpyF3I CTNAG 6 cut(s) 7, 127, 261, 578, 1019, 1040
HpySE526I ACGT 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 899
Hsp92II CATG 4 cut(s) 350, 496, 877, 1154
Kzo9I GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 146, 214, 412
Lsp1109I GCAGC 2 cut(s) 166, 277
LweI GCATC 1 cut(s) 1216
MaeI CTAG 1 cut(s) 936
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 66
MalI GATC 9 cut(s) 18, 498, 531, 583, 750, 953, 1071, 1128, 1148
MboI GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
MboII GAAGA 9 cut(s) 239, 444, 524, 706, 792, 1035, 1172, 1257, 1263
MflI RGATCY 2 cut(s) 496, 1146
MhlI GDGCHC 3 cut(s) 8, 151, 577
MluCI AATT 5 cut(s) 87, 238, 295, 356, 1033
MlyI GAGTC 3 cut(s) 693, 713, 1051
MseI TTAA 5 cut(s) 167, 192, 785, 978, 1259
MslI CAYNNNNRTG 3 cut(s) 525, 959, 1155
MspCI CTTAAG 1 cut(s) 1258
MspI CCGG 3 cut(s) 302, 558, 1144
MspR9I CCNGG 3 cut(s) 303, 558, 746
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 2 cut(s) 155, 896
NciI CCSGG 2 cut(s) 303, 558
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 340
NdeII GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
NlaIII CATG 4 cut(s) 350, 496, 877, 1154
NlaIV GGNNCC 3 cut(s) 210, 839, 1148
NmuCI GTSAC 1 cut(s) 66
OliI CACNNNNGTG 1 cut(s) 959
PagI TCATGA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 252
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 650, 800, 1076
PflMI CCANNNNNTGG 1 cut(s) 1004
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 2 cut(s) 181, 292
PleI GAGTC 3 cut(s) 692, 712, 1050
PpsI GAGTC 3 cut(s) 692, 712, 1050
PpuMI RGGWCCY 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 3 cut(s) 210, 839, 1148
PspPI GGNCC 2 cut(s) 308, 335
PspPPI RGGWCCY 1 cut(s) 308
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 496, 1146
RsaI GTAC 3 cut(s) 93, 465, 1241
RsaNI GTAC 3 cut(s) 92, 464, 1240
RseI CAYNNNNRTG 3 cut(s) 525, 959, 1155
SacI GAGCTC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 5 cut(s) 167, 192, 785, 978, 1259
SatI GCNGC 2 cut(s) 180, 291
Sau3AI GATC 9 cut(s) 16, 496, 529, 581, 748, 951, 1069, 1126, 1146
Sau96I GGNCC 2 cut(s) 308, 335
SchI GAGTC 3 cut(s) 693, 713, 1051
ScrFI CCNGG 3 cut(s) 303, 558, 746
SduI GDGCHC 3 cut(s) 8, 151, 577
SfaNI GCATC 1 cut(s) 1216
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 308, 335
SmiMI CAYNNNNRTG 3 cut(s) 525, 959, 1155
SmlI CTYRAG 3 cut(s) 500, 640, 1258
SmoI CTYRAG 3 cut(s) 500, 640, 1258
SpeI ACTAGT 1 cut(s) 935
Sse9I AATT 5 cut(s) 87, 238, 295, 356, 1033
SsiI CCGC 2 cut(s) 368, 1154
SspMI CTAG 1 cut(s) 936
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 301, 556, 744
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 1 cut(s) 439
TaqI TCGA 5 cut(s) 317, 401, 794, 1175, 1236
TasI AATT 5 cut(s) 87, 238, 295, 356, 1033
TatI WGTACW 1 cut(s) 1239
TfiI GAWTC 3 cut(s) 650, 800, 1076
Tru1I TTAA 5 cut(s) 167, 192, 785, 978, 1259
Tru9I TTAA 5 cut(s) 167, 192, 785, 978, 1259
TscAI CASTG 3 cut(s) 337, 577, 961
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 2 cut(s) 179, 290
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 3 cut(s) 363, 936, 1173
TspRI CASTG 3 cut(s) 337, 577, 961
Van91I CCANNNNNTGG 1 cut(s) 1004
Vha464I CTTAAG 1 cut(s) 1258
VpaK11BI GGWCC 2 cut(s) 308, 335
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 295, 1033
XcmI CCANNNNNNNNNTGG 2 cut(s) 742, 871
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.