MD16G1282800.v1.1

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012074
Physical Location & Seq
Forward (+)
38746839 .. 38750566
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1282800.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGGCTCCGAGCAGAATAGATTCCCTCAACAGGAGCGGAGAAAGAGATGGGGAGGATGTTGGGGTGCATTCTCTTGCTTTCCCTCACAAAAAGGAGGAAAGCGCATAGTGCCTGCAACTCGCATTCCTGAAGGCAATGCATCAGCAAATCAGCCAAATGGACCCCAAACAGTTGGGCTCGCCAACCAAACAACATCGCTAGCTCCTTCTCTTCTAGCTCCGCCTTCTTCTCCAGCATCATTTACAAATTCAGCCCTTCCTTCAACAGCGCAGTCTCCTAGTTGTTTCTTGTCTGCCAACTCACCTGGAGGTCCTTCATCCACCATGTATGCCACCGGGCCATATGCCAACGAAACACAACTTGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCTTCCACAGCCCCTCTCACTCCCCCACCAGAGTTGGCTCACTTAACTACTCCATCTTCCCCAGATGTACCGTACGCTCATTTCCTCTCATCTTCAGTAGACCTTAAAAGTACTGAGAAGACCAATTACATTGCTGCAAGTGATCTTCATTCAACATATTCCCTCTATCCTGGAAGTCCTGCTAGTAGTCTCAGATCACCAATTTCAAGGGCATCAAACAATTGTTCATCTTCATCTTTTCCTGAGCGTGATTTCCCCTCACATTGGGATCCGTCAGCTTCTCCTCAAAATGGCACCTATCCAAGGATTGGTTCTGCAAGGATGTTTGGACATGACCCAGTTGGAGCCTCTGTGGCATCTCAAGACTCGAACTTCTTTTGTCCTGCTACATTTGCACAGTTTTATCTGGATAATCCACCATTTCCTCATGCTGGTGGAAGGTTAAGTGTGTCCAAGGATTCAGATGTTTACACTACTGGTGGGAATGGAAGTCAGAGCAGACACAGTAGAAGCCCCAAGCAAGATGTGGAAGAAATAGAAGCGTATAGAGCATCCTTTGGGTTTAGTGCTGATGAAATTATCACCACAACACAATATGTGGAGATTTCTGATGTAATGGAGGACTCATTTACCATGACACCTTTTCCCTCGCATAAATTGCCTACCGAAGAAAGTATGGAACCGACATCTGTCAGTGAAGGACTAAAAGCACATAAGACAAAAACAAACTTGCAGAGTCAGGATAGTCTTAAATCAGAACCAGATCTTGATGACGGTGGACATTGTGACTTGGCCATATCGTGTACTGGATCCGAAGATCACAAATCATGGAGGCAGTCCAGTGATGTCTCTCGATCAAGTACACGTGGAATTCGTATTGTGGCTGATGAAGAGGACATTTTTTCAAAGATGGGGTCATCTAAATTGAGCAGAAAGTATCAGATGGGTCAATCTAGCTCAGATGCAGAAATTGATTATAGAAGGGGGAGAAGCTTACGGGAGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

470

Amino Acids

50.56

Weight (kDa)

5.91

Isoelectric Point (pI)

77.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 498
AciI CCGC 2 cut(s) 37, 221
AclWI GGATC 4 cut(s) 662, 675, 1203, 1216
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 2 cut(s) 247, 1269
AcuI CTGAAG 2 cut(s) 150, 477
AcvI CACGTG 1 cut(s) 1265
AfaI GTAC 5 cut(s) 468, 473, 511, 1204, 1261
AfiI CCNNNNNNNGG 6 cut(s) 31, 663, 689, 702, 707, 830
AflIII ACRYGT 1 cut(s) 1262
AgsI TTSAA 4 cut(s) 264, 552, 606, 1305
AjnI CCWGG 2 cut(s) 304, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 5 cut(s) 203, 218, 677, 1356, 1392
AluI AGCT 5 cut(s) 203, 218, 677, 1356, 1392
Alw26I GTCTC 4 cut(s) 279, 370, 593, 1252
AlwI GGATC 4 cut(s) 662, 675, 1203, 1216
AoxI GGCC 2 cut(s) 338, 1191
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 247, 1269
ArsI GACNNNNNNTTYG 2 cut(s) 1298, 1330
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 2 cut(s) 105, 271
AspS9I GGNCC 3 cut(s) 161, 311, 338
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 3 cut(s) 294, 588, 973
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 2 cut(s) 161, 311
BalI TGGCCA 1 cut(s) 1193
BamHI GGATCC 2 cut(s) 667, 1208
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 2 cut(s) 8, 180
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
BbrPI CACGTG 1 cut(s) 1265
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 520
BccI CCATC 4 cut(s) 42, 460, 1303, 1336
BciT130I CCWGG 2 cut(s) 306, 570
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 4 cut(s) 279, 370, 593, 1252
BfaI CTAG 5 cut(s) 200, 215, 279, 582, 1353
BglI GCCNNNNNGGC 1 cut(s) 752
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 306, 337, 570
Bme18I GGWCC 2 cut(s) 161, 311
BmgT120I GGNCC 3 cut(s) 161, 311, 338
BmiI GGNNCC 7 cut(s) 7, 163, 669, 694, 745, 1080, 1210
BmrFI CCNGG 3 cut(s) 306, 337, 570
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 6 cut(s) 149, 245, 620, 764, 959, 1351
BmtI GCTAGC 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 731
BoxI GACNNNNGTC 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 216, 327
Bpu10I CCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 1265
BsaJI CCNNGG 2 cut(s) 701, 852
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 663, 689, 702, 707, 830
Bse1I ACTGG 4 cut(s) 737, 880, 1210, 1239
Bse3DI GCAATG 2 cut(s) 142, 528
BseBI CCWGG 2 cut(s) 306, 570
BseDI CCNNGG 2 cut(s) 701, 852
BseGI GGATG 4 cut(s) 62, 317, 726, 950
BseLI CCNNNNNNNGG 6 cut(s) 31, 663, 689, 702, 707, 830
BseMI GCAATG 2 cut(s) 142, 528
BseMII CTCAG 5 cut(s) 387, 504, 604, 633, 1371
BseNI ACTGG 4 cut(s) 737, 880, 1210, 1239
BseRI GAGGAG 2 cut(s) 360, 672
BseXI GCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 340, 1193
BshNI GGYRCC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 336
BsiWI CGTACG 1 cut(s) 471
BslI CCNNNNNNNGG 6 cut(s) 31, 663, 689, 702, 707, 830
BsmAI GTCTC 4 cut(s) 279, 370, 593, 1252
BsmI GAATGC 2 cut(s) 68, 123
BsnI GGCC 2 cut(s) 340, 1193
Bsp1286I GDGCHC 2 cut(s) 8, 180
Bsp143I GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
BspACI CCGC 2 cut(s) 37, 221
BspANI GGCC 2 cut(s) 340, 1193
BspCNI CTCAG 5 cut(s) 388, 505, 603, 634, 1370
BspLI GGNNCC 7 cut(s) 7, 163, 669, 694, 745, 1080, 1210
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 4 cut(s) 662, 675, 1203, 1216
BspT107I GGYRCC 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 142, 528
BsrI ACTGG 4 cut(s) 737, 880, 1210, 1239
BssECI CCNNGG 2 cut(s) 701, 852
BssMI GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
BssT1I CCWWGG 2 cut(s) 701, 852
Bst2UI CCWGG 2 cut(s) 306, 570
Bst4CI ACNGT 5 cut(s) 172, 471, 798, 905, 1175
Bst6I CTCTTC 2 cut(s) 216, 1284
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 3 cut(s) 114, 180, 201
BstDEI CTNAG 5 cut(s) 396, 513, 590, 642, 1357
BstENI CCTNNNNNAGG 1 cut(s) 700
BstF5I GGATG 4 cut(s) 62, 317, 726, 950
BstHHI GCGC 2 cut(s) 105, 271
BstKTI GATC 7 cut(s) 544, 596, 670, 1165, 1211, 1219, 1256
BstMAI GTCTC 4 cut(s) 279, 370, 593, 1252
BstMBI GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
BstMWI GCNNNNNNNGC 5 cut(s) 109, 752, 791, 947, 1057
BstNI CCWGG 2 cut(s) 306, 570
BstPAI GACNNNNGTC 1 cut(s) 1088
BstSCI CCNGG 3 cut(s) 304, 335, 568
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 3 cut(s) 667, 1162, 1208
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 3 cut(s) 667, 1162, 1208
BsuRI GGCC 2 cut(s) 340, 1193
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 62, 317, 726, 950
BtsIMutI CAGTG 2 cut(s) 1099, 1246
Cac8I GCNNGC 3 cut(s) 114, 180, 201
CfoI GCGC 2 cut(s) 105, 271
Cfr13I GGNCC 3 cut(s) 161, 311, 338
Csp6I GTAC 5 cut(s) 467, 472, 510, 1203, 1260
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 5 cut(s) 325, 731, 827, 1033, 1227
CviQI GTAC 5 cut(s) 467, 472, 510, 1203, 1260
DdeI CTNAG 5 cut(s) 396, 513, 590, 642, 1357
DpnI GATC 7 cut(s) 543, 595, 669, 1164, 1210, 1218, 1255
DpnII GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 2 cut(s) 216, 1284
EarI CTCTTC 2 cut(s) 216, 1284
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 701, 852
Eco24I GRGCYC 2 cut(s) 8, 180
Eco47I GGWCC 2 cut(s) 161, 311
Eco57I CTGAAG 2 cut(s) 150, 477
Eco72I CACGTG 1 cut(s) 1265
EcoNI CCTNNNNNAGG 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 1269
EcoRII CCWGG 2 cut(s) 304, 568
EcoT14I CCWWGG 2 cut(s) 701, 852
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 8, 180
ErhI CCWWGG 2 cut(s) 701, 852
FaeI CATG 5 cut(s) 328, 734, 830, 1036, 1230
FatI CATG 5 cut(s) 324, 730, 826, 1032, 1226
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 4 cut(s) 69, 304, 733, 937
FriOI GRGCYC 2 cut(s) 8, 180
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 5 cut(s) 200, 215, 279, 582, 1353
GlaI GCGC 2 cut(s) 104, 270
GluI GCNGC 1 cut(s) 534
GsuI CTGGAG 2 cut(s) 216, 327
HaeIII GGCC 2 cut(s) 340, 1193
HapII CCGG 1 cut(s) 336
HhaI GCGC 2 cut(s) 105, 271
Hin1II CATG 5 cut(s) 328, 734, 830, 1036, 1230
Hin6I GCGC 2 cut(s) 103, 269
HinP1I GCGC 2 cut(s) 103, 269
HindIII AAGCTT 1 cut(s) 1390
HinfI GANTC 5 cut(s) 21, 764, 857, 1022, 1135
HpaII CCGG 1 cut(s) 336
HphI GGTGA 3 cut(s) 294, 588, 973
Hpy166II GTNNAC 5 cut(s) 499, 868, 1178, 1203, 1262
Hpy188I TCNGA 9 cut(s) 10, 593, 862, 894, 1009, 1156, 1213, 1341, 1360
Hpy188III TCNNGA 7 cut(s) 128, 641, 761, 806, 1139, 1166, 1251
Hpy8I GTNNAC 5 cut(s) 499, 868, 1178, 1203, 1262
HpyCH4III ACNGT 5 cut(s) 172, 471, 798, 905, 1175
HpyCH4IV ACGT 1 cut(s) 1264
HpyCH4V TGCA 8 cut(s) 68, 116, 140, 536, 716, 794, 1132, 1364
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 752, 791, 947, 1057
HpyF3I CTNAG 5 cut(s) 396, 513, 590, 642, 1357
HpySE526I ACGT 1 cut(s) 1264
Hsp92II CATG 5 cut(s) 328, 734, 830, 1036, 1230
HspAI GCGC 2 cut(s) 103, 269
Kzo9I GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
LmnI GCTCC 5 cut(s) 11, 34, 208, 223, 743
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 6 cut(s) 149, 245, 620, 764, 959, 1351
MaeI CTAG 5 cut(s) 200, 215, 279, 582, 1353
MaeII ACGT 1 cut(s) 1264
MaeIII GTNAC 1 cut(s) 1184
MalI GATC 7 cut(s) 543, 595, 669, 1164, 1210, 1218, 1255
MbiI CCGCTC 1 cut(s) 37
MboI GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
MfeI CAATTG 1 cut(s) 619
MflI RGATCY 3 cut(s) 667, 1162, 1208
MhlI GDGCHC 2 cut(s) 8, 180
MlsI TGGCCA 1 cut(s) 1193
MluCI AATT 9 cut(s) 247, 523, 600, 619, 975, 1055, 1269, 1322, 1368
MluNI TGGCCA 1 cut(s) 1193
MlyI GAGTC 3 cut(s) 758, 1016, 1144
MmeI TCCRAC 1 cut(s) 721
Mox20I TGGCCA 1 cut(s) 1193
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 20
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 4 cut(s) 443, 504, 842, 1149
MslI CAYNNNNRTG 1 cut(s) 831
Msp20I TGGCCA 1 cut(s) 1193
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 3 cut(s) 306, 337, 570
MunI CAATTG 1 cut(s) 619
Mva1269I GAATGC 2 cut(s) 68, 123
MvaI CCWGG 2 cut(s) 306, 570
MwoI GCNNNNNNNGC 5 cut(s) 109, 752, 791, 947, 1057
NciI CCSGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 343
NdeII GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 5 cut(s) 328, 734, 830, 1036, 1230
NlaIV GGNNCC 7 cut(s) 7, 163, 669, 694, 745, 1080, 1210
NmuCI GTSAC 1 cut(s) 1184
NsiI ATGCAT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 1270
PctI GAATGC 2 cut(s) 68, 123
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 21, 857
Pfl23II CGTACG 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 3 cut(s) 758, 1016, 1143
PmaCI CACGTG 1 cut(s) 1265
PmlI CACGTG 1 cut(s) 1265
PpsI GAGTC 3 cut(s) 758, 1016, 1143
Ppu21I YACGTR 1 cut(s) 1265
PpuMI RGGWCCY 1 cut(s) 311
PshAI GACNNNNGTC 1 cut(s) 1088
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 304, 568
PspCI CACGTG 1 cut(s) 1265
PspGI CCWGG 2 cut(s) 304, 568
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 7 cut(s) 7, 163, 669, 694, 745, 1080, 1210
PspPI GGNCC 3 cut(s) 161, 311, 338
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 3 cut(s) 667, 1162, 1208
RsaI GTAC 5 cut(s) 468, 473, 511, 1204, 1261
RsaNI GTAC 5 cut(s) 467, 472, 510, 1203, 1260
RseI CAYNNNNRTG 1 cut(s) 831
SaqAI TTAA 4 cut(s) 443, 504, 842, 1149
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 7 cut(s) 541, 593, 667, 1162, 1208, 1216, 1253
Sau96I GGNCC 3 cut(s) 161, 311, 338
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 3 cut(s) 758, 1016, 1144
ScrFI CCNGG 3 cut(s) 306, 337, 570
SduI GDGCHC 2 cut(s) 8, 180
SfaNI GCATC 6 cut(s) 149, 245, 620, 764, 959, 1351
SinI GGWCC 2 cut(s) 161, 311
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 759
SmoI CTYRAG 1 cut(s) 759
Sse9I AATT 9 cut(s) 247, 523, 600, 619, 975, 1055, 1269, 1322, 1368
SsiI CCGC 2 cut(s) 37, 221
SspMI CTAG 5 cut(s) 200, 215, 279, 582, 1353
StyD4I CCNGG 3 cut(s) 304, 335, 568
StyI CCWWGG 2 cut(s) 701, 852
TaaI ACNGT 5 cut(s) 172, 471, 798, 905, 1175
TaiI ACGT 1 cut(s) 1267
TaqI TCGA 2 cut(s) 767, 1252
TasI AATT 9 cut(s) 247, 523, 600, 619, 975, 1055, 1269, 1322, 1368
TatI WGTACW 3 cut(s) 509, 1202, 1259
TfiI GAWTC 2 cut(s) 21, 857
Tru1I TTAA 4 cut(s) 443, 504, 842, 1149
Tru9I TTAA 4 cut(s) 443, 504, 842, 1149
TscAI CASTG 2 cut(s) 1099, 1246
TseFI GTSAC 1 cut(s) 1184
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 1184
TspDTI ATGAA 6 cut(s) 306, 536, 615, 621, 987, 1302
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 2 cut(s) 1099, 1246
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 161, 311
XagI CCTNNNNNAGG 1 cut(s) 700
XapI RAATTY 2 cut(s) 247, 1269
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 5 cut(s) 200, 215, 279, 582, 1353
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.