RLG00000002445

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012074
Physical Location & Seq
Forward (+)
34340896 .. 34343676
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002445

Sequence Viewer

Length: 1392 bp
ATGGGTTCCGAGCAGAACAGGTTCCCTCAGCAGGAACGGAGAAAGAGATGGGGAGGATGTTTGGGTGCATTCTCTTGTTTCGGTACACAGAAAGGTGGAAAGCGTATAGTCCCTGCATCTCGTATACCTGACGGCAATGCATCAGCGACCCAGCCAAATGGAACCCAAGCAGCTGGGTTGGCAAACCAAGCAACAGGATTAGCTCCGTCTCTTTTAGCTCCGCCTTCTTCGCCAGCATCATTTACAAATTCCGCCCTTCCTTCAACAGCTCAGTCACCCAGTTGTTACTTGTCATTAGCTGCGAACTCACCTGGAGGTCCTTCAAACAGAATGTTTGCAACTGGGCCATACGCCAATGAAACACAACTGGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACAGCTCCTCTTACTCCCCCTCCAGAATTGGCGCATCTAACTACTCCCTCTTCCCCAGATGTGCCATTTGCTCGTTTCCTCTCATCTTCAGCGGATATTAAAAGCACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCAAGCAACATATTCTCTGTATCCTGGGAGTCCTGCTAGTAGTCTCAGATCTCCAATTTCAAGGGCATCAAATGACTGTTCTTCATCATCTTTTCCAGAACGCGATTTCCCCCCACAGTGGGATCCCTCAGTTTCTCCCCAAAATGGAAACTATCCAAGGAGTGGTTCTGGCAGGTTGTATGGGCATGACACAACTGGACCCTCTGTGGCATCTCAAGACTCGAATTTCTTCTGTCCTGCAACATTTGCACAGTTTTATCTGGATAATCCACCATTCCCTCATACTGGAGGAAGGTTAAGTGTTTCCAAGGATTCAGATGCTTACTCAACTAGTGGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGAAGTCAGAACAGGCACAATAGAAGCCCTAAGCAAGATGTGGAAGAATTAGAAGCCTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAATTATTACCACCACCCAGTATGTTGAGATTACTGATGTCATGGACGAATCATTTACCATTGGCTCTCATAAATCTCCCCCAGAGGAAAGCGTAGAGCCTAAATCTGCTGTTGCAGGACGCTCTGACTTGCCAGTATTGTCCAATGGATATGAAGATCAAAAGTCCCGAAGACAGCCTTGTGATGTCTCTCGATCAACTACGCCTGGTATGCGTACTGTGACCAATGAAGAAGACATATTCTCAAAGATGGGGTCATCTAAATCGAGCAGAAGGTATCAGATGGGGCAATCTTGCTCAGATGCGGAAATCGACTACAGAAGAGGAAGAAGCTTACGAGAGGGCAAAGGGGATTTCACATGGCATGACAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

49.5

Weight (kDa)

5.96

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 654
AciI CCGC 4 cut(s) 221, 252, 503, 1319
AclWI GGATC 2 cut(s) 668, 681
AcsI RAATTY 2 cut(s) 247, 775
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 85, 1231
AfiI CCNNNNNNNGG 6 cut(s) 31, 669, 670, 695, 713, 836
AgsI TTSAA 4 cut(s) 264, 324, 554, 612
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 3 cut(s) 310, 574, 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 7 cut(s) 173, 203, 218, 269, 299, 416, 1347
AluI AGCT 7 cut(s) 173, 203, 218, 269, 299, 416, 1347
Alw26I GTCTC 4 cut(s) 213, 376, 599, 1207
AlwI GGATC 2 cut(s) 668, 681
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 3 cut(s) 170, 299, 539
ApoI RAATTY 2 cut(s) 247, 775
ArsI GACNNNNNNTTYG 2 cut(s) 1253, 1285
Asp700I GAANNNNTTC 2 cut(s) 20, 779
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 317, 344, 749
AsuHPI GGTGA 2 cut(s) 267, 300
AvaII GGWCC 2 cut(s) 317, 749
BamHI GGATCC 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 3 cut(s) 530, 1192, 1254
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 182, 286, 526
BccI CCATC 3 cut(s) 42, 1258, 1291
BceAI ACGGC 2 cut(s) 148, 391
BciT130I CCWGG 3 cut(s) 312, 576, 1221
BciVI GTATCC 1 cut(s) 582
BcoDI GTCTC 4 cut(s) 213, 376, 599, 1207
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 2 cut(s) 588, 882
BfmI CTRYAG 2 cut(s) 985, 1330
BfuAI ACCTGC 1 cut(s) 714
BfuI GTATCC 1 cut(s) 582
BglII AGATCT 1 cut(s) 599
BisI GCNGC 3 cut(s) 171, 300, 540
BlsI GCNGC 3 cut(s) 172, 301, 541
Bme1390I CCNGG 3 cut(s) 312, 576, 1221
Bme18I GGWCC 2 cut(s) 317, 749
BmgT120I GGNCC 3 cut(s) 317, 344, 749
BmiI GGNNCC 5 cut(s) 7, 23, 163, 675, 751
BmrFI CCNGG 3 cut(s) 312, 576, 1221
BmrI ACTGGG 3 cut(s) 273, 351, 1027
BmsI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 1001, 1306
BmuI ACTGGG 3 cut(s) 273, 351, 1027
BpiI GAAGAC 3 cut(s) 530, 1192, 1254
BpmI CTGGAG 3 cut(s) 333, 417, 858
Bpu10I CCTNAGC 2 cut(s) 27, 957
BpuEI CTTGAG 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 575, 707, 858
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 669, 670, 695, 713, 836
Bse1I ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1033, 1148
Bse3DI GCAATG 2 cut(s) 142, 534
BseBI CCWGG 3 cut(s) 312, 576, 1221
BseDI CCNNGG 3 cut(s) 575, 707, 858
BseGI GGATG 2 cut(s) 62, 992
BseLI CCNNNNNNNGG 6 cut(s) 31, 669, 670, 695, 713, 836
BseMI GCAATG 2 cut(s) 142, 534
BseMII CTCAG 7 cut(s) 41, 284, 393, 510, 610, 693, 1326
BseNI ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1033, 1148
BseRI GAGGAG 2 cut(s) 366, 408
BseXI GCAGC 3 cut(s) 182, 286, 526
BseYI CCCAGC 2 cut(s) 150, 173
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 346
BslFI GGGAC 2 cut(s) 95, 1165
BslI CCNNNNNNNGG 6 cut(s) 31, 669, 670, 695, 713, 836
BsmAI GTCTC 4 cut(s) 213, 376, 599, 1207
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 95, 1165
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 376
Bsp143I GATC 5 cut(s) 547, 599, 673, 1171, 1208
BspACI CCGC 4 cut(s) 221, 252, 503, 1319
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 7 cut(s) 40, 283, 394, 511, 609, 692, 1325
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 5 cut(s) 7, 23, 163, 675, 751
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 2 cut(s) 668, 681
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 142, 534
BsrI ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1033, 1148
BssECI CCNNGG 3 cut(s) 575, 707, 858
BssMI GATC 5 cut(s) 547, 599, 673, 1171, 1208
BssNAI GTATAC 1 cut(s) 125
BssT1I CCWWGG 2 cut(s) 707, 858
Bst1107I GTATAC 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 312, 576, 1221
Bst4CI ACNGT 4 cut(s) 629, 669, 804, 1234
Bst6I CTCTTC 2 cut(s) 466, 1330
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 957, 1312
BstF5I GGATG 2 cut(s) 62, 992
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 5 cut(s) 550, 602, 676, 1174, 1211
BstMAI GTCTC 4 cut(s) 213, 376, 599, 1207
BstMBI GATC 5 cut(s) 547, 599, 673, 1171, 1208
BstMWI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 989, 1225
BstNI CCWGG 3 cut(s) 312, 576, 1221
BstSCI CCNGG 3 cut(s) 310, 574, 1219
BstSFI CTRYAG 2 cut(s) 985, 1330
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 182, 286, 526
BstV2I GAAGAC 3 cut(s) 530, 1192, 1254
BstX2I RGATCY 2 cut(s) 599, 673
BstXI CCANNNNNNTGG 2 cut(s) 158, 173
BstYI RGATCY 2 cut(s) 599, 673
BstZ17I GTATAC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 582
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 62, 992
BtsIMutI CAGTG 3 cut(s) 516, 674, 1012
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 317, 344, 749
CseI GACGC 1 cut(s) 1143
Csp6I GTAC 2 cut(s) 84, 1230
CviAII CATG 4 cut(s) 737, 1057, 1374, 1379
CviQI GTAC 2 cut(s) 84, 1230
DdeI CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 957, 1312
DpnI GATC 5 cut(s) 549, 601, 675, 1173, 1210
DpnII GATC 5 cut(s) 547, 599, 673, 1171, 1208
Eam1104I CTCTTC 2 cut(s) 466, 1330
EarI CTCTTC 2 cut(s) 466, 1330
EciI GGCGGA 2 cut(s) 210, 241
Eco130I CCWWGG 2 cut(s) 707, 858
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 317, 749
Eco57I CTGAAG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 310, 574, 1219
EcoT14I CCWWGG 2 cut(s) 707, 858
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 707, 858
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 4 cut(s) 740, 1060, 1377, 1382
FalI AAGNNNNNCTT 2 cut(s) 1177, 1209
FaqI GGGAC 2 cut(s) 95, 1165
FatI CATG 4 cut(s) 736, 1056, 1373, 1378
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 171, 300, 540
FokI GGATG 2 cut(s) 69, 979
Fsp4HI GCNGC 3 cut(s) 171, 300, 540
FspBI CTAG 2 cut(s) 588, 882
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 171, 300, 540
GsaI CCCAGC 2 cut(s) 154, 177
GsuI CTGGAG 3 cut(s) 333, 417, 858
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 1 cut(s) 1143
HhaI GCGC 1 cut(s) 445
Hin1II CATG 4 cut(s) 740, 1060, 1377, 1382
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HindIII AAGCTT 1 cut(s) 1345
HinfI GANTC 4 cut(s) 580, 770, 863, 1064
HphI GGTGA 2 cut(s) 267, 300
Hpy166II GTNNAC 3 cut(s) 86, 125, 411
Hpy188I TCNGA 7 cut(s) 10, 599, 868, 936, 1141, 1296, 1315
Hpy188III TCNNGA 6 cut(s) 434, 647, 767, 812, 1182, 1206
Hpy8I GTNNAC 3 cut(s) 86, 125, 411
HpyAV CCTTC 7 cut(s) 234, 266, 270, 330, 403, 837, 1281
HpyCH4III ACNGT 4 cut(s) 629, 669, 804, 1234
HpyCH4V TGCA 8 cut(s) 68, 116, 140, 338, 542, 791, 800, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 989, 1225
HpyF3I CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 957, 1312
Hsp92II CATG 4 cut(s) 740, 1060, 1377, 1382
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 5 cut(s) 547, 599, 673, 1171, 1208
LmnI GCTCC 3 cut(s) 208, 223, 421
Lsp1109I GCAGC 3 cut(s) 182, 286, 526
LweI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 1001, 1306
MaeI CTAG 2 cut(s) 588, 882
MaeIII GTNAC 3 cut(s) 273, 284, 1234
MalI GATC 5 cut(s) 549, 601, 675, 1173, 1210
MboI GATC 5 cut(s) 547, 599, 673, 1171, 1208
MflI RGATCY 2 cut(s) 599, 673
MluCI AATT 7 cut(s) 247, 437, 529, 606, 775, 974, 1017
MlyI GAGTC 2 cut(s) 589, 764
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 20, 779
MseI TTAA 2 cut(s) 510, 848
MspA1I CMGCKG 2 cut(s) 173, 503
MspR9I CCNGG 3 cut(s) 312, 576, 1221
Mva1269I GAATGC 1 cut(s) 68
MvaI CCWGG 3 cut(s) 312, 576, 1221
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 989, 1225
NdeII GATC 5 cut(s) 547, 599, 673, 1171, 1208
NlaIII CATG 4 cut(s) 740, 1060, 1377, 1382
NlaIV GGNNCC 5 cut(s) 7, 23, 163, 675, 751
NmuCI GTSAC 2 cut(s) 273, 1234
NsiI ATGCAT 1 cut(s) 142
PctI GAATGC 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 20, 779
PfeI GAWTC 2 cut(s) 863, 1064
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 3 cut(s) 172, 301, 541
PleI GAGTC 2 cut(s) 588, 764
PpsI GAGTC 2 cut(s) 588, 764
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 3 cut(s) 310, 574, 1219
PspFI CCCAGC 2 cut(s) 150, 173
PspGI CCWGG 3 cut(s) 310, 574, 1219
PspN4I GGNNCC 5 cut(s) 7, 23, 163, 675, 751
PspPI GGNCC 3 cut(s) 317, 344, 749
PspPPI RGGWCCY 1 cut(s) 317
PsuI RGATCY 2 cut(s) 599, 673
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 85, 1231
RsaNI GTAC 2 cut(s) 84, 1230
SaqAI TTAA 2 cut(s) 510, 848
SatI GCNGC 3 cut(s) 171, 300, 540
Sau3AI GATC 5 cut(s) 547, 599, 673, 1171, 1208
Sau96I GGNCC 3 cut(s) 317, 344, 749
SchI GAGTC 2 cut(s) 589, 764
ScrFI CCNGG 3 cut(s) 312, 576, 1221
SfaNI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 1001, 1306
SfcI CTRYAG 2 cut(s) 985, 1330
SinI GGWCC 2 cut(s) 317, 749
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
SpeI ACTAGT 1 cut(s) 881
Sse9I AATT 7 cut(s) 247, 437, 529, 606, 775, 974, 1017
SsiI CCGC 4 cut(s) 221, 252, 503, 1319
SspMI CTAG 2 cut(s) 588, 882
StyD4I CCNGG 3 cut(s) 310, 574, 1219
StyI CCWWGG 2 cut(s) 707, 858
TaaI ACNGT 4 cut(s) 629, 669, 804, 1234
TaqI TCGA 4 cut(s) 773, 1207, 1280, 1326
TasI AATT 7 cut(s) 247, 437, 529, 606, 775, 974, 1017
TfiI GAWTC 2 cut(s) 863, 1064
Tru1I TTAA 2 cut(s) 510, 848
Tru9I TTAA 2 cut(s) 510, 848
TscAI CASTG 3 cut(s) 523, 674, 1012
TseFI GTSAC 2 cut(s) 273, 1234
TseI GCWGC 3 cut(s) 170, 299, 539
Tsp45I GTSAC 2 cut(s) 273, 1234
TspDTI ATGAA 5 cut(s) 372, 624, 1029, 1182, 1257
TspGWI ACGGA 2 cut(s) 52, 195
TspRI CASTG 3 cut(s) 523, 674, 1012
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 317, 749
XapI RAATTY 2 cut(s) 247, 775
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 2 cut(s) 20, 779
XspI CTAG 2 cut(s) 588, 882
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.