Rmu_sc0000202.1_g000008

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000202.1
OG0012074
Physical Location & Seq
Reverse (-)
20427 .. 23201
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000202.1_g000008.1.cds

Sequence Viewer

Length: 1368 bp
atgggttccgagcagaacaggtttcctcagcaggaacggagaaagagatggggaggatgtttgggtgcgttctcttgtttcggtacacagaaaggtggaaagcgtatagtccctgcatctcgtatacctgatggcaatgcatcagcgacccagccaaatggaccccaagcagctgggttggcaaaccaagcaacaggattagctccatctcttttagctccgccttcttcgccagcatcatttacaaattccgcccttccttcaacagctcagtcacccagttgttacttgtcattagctgcgaactcacctggaggtccttcaaacagaatgtttgcaactgggccatacgccaatgaaacacaactggtctctcctcctgttttctcaaccttcacaactgagccgtccacagctcctcttactccccctccagaattggcgcatctaactactccctcttccccagatgtgccatttgctcgtttcctctcatcttcagcggatattaaaagcactgagaagaccaattacattgctgcaaatgatcttcaagctacatattcgctgtatcctgggagccctgcaagtagtctcagatctccaatttcaagggcatcaaatgactgttcttcatcatcttttccagaacgcgatttccccccacagtgggatccctcagtttctccccaaaatggaaactatccaaggagtggttccggcaggttgtatgggcatgacacaactggaccctctgtggcatctcaagactcgaatttcttctgtcctgcaacatttgcacagttttatctggataatccaccattccctcatactggaggaaggttaagtgtttccaaggattcagatgcttactcaactagtggaaatggaaatggaaatggaagtcagaacaggcacaatagaagccctaagcaagatgtggaagaattagaagcctatagagcatcctttgggttcagtgctgatgaaattattaccaccacccagtatgttgagattactgatgtcatggatgaatcatttaccattggctctcataaatctcccccagaggaaagcgtagagcctaaatctgccgttgcaggacgctctgacttgccagtattgtccaatggatatgaagatcaaaagccccgaagacagccttgtgatgtctctcgatcaactacgcctggtatgcgtactgtgaccaatgaagaagacatgttctcaaagatggggtcatctaaatcgagcagaaggtatcagatggggcaatcttgctcagatgcggaaattgactacagaagaggaagaagcttacgagagggcaaaggggatttcacatggcatgacaaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

48.84

Weight (kDa)

5.96

Isoelectric Point (pI)

69.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 654
AciI CCGC 4 cut(s) 221, 252, 503, 1295
AclWI GGATC 2 cut(s) 668, 681
AcsI RAATTY 2 cut(s) 247, 775
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 85, 1207
AfiI CCNNNNNNNGG 5 cut(s) 669, 670, 695, 713, 836
AflIII ACRYGT 1 cut(s) 1227
AgsI TTSAA 4 cut(s) 264, 324, 554, 612
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 3 cut(s) 310, 574, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 8 cut(s) 173, 203, 218, 269, 299, 416, 557, 1323
AluI AGCT 8 cut(s) 173, 203, 218, 269, 299, 416, 557, 1323
Alw26I GTCTC 3 cut(s) 376, 599, 1183
AlwI GGATC 2 cut(s) 668, 681
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 3 cut(s) 170, 299, 539
ApoI RAATTY 2 cut(s) 247, 775
ArsI GACNNNNNNTTYG 2 cut(s) 1229, 1261
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 4 cut(s) 161, 317, 344, 749
AsuHPI GGTGA 2 cut(s) 267, 300
AvaII GGWCC 3 cut(s) 161, 317, 749
BamHI GGATCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 3 cut(s) 530, 1168, 1230
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 182, 286, 526
BccI CCATC 5 cut(s) 42, 125, 214, 1234, 1267
BceAI ACGGC 2 cut(s) 391, 1085
BciT130I CCWGG 3 cut(s) 312, 576, 1197
BciVI GTATCC 1 cut(s) 582
BcoDI GTCTC 3 cut(s) 376, 599, 1183
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 1 cut(s) 882
BfmI CTRYAG 2 cut(s) 961, 1306
BfuAI ACCTGC 1 cut(s) 714
BfuI GTATCC 1 cut(s) 582
BglII AGATCT 1 cut(s) 599
BisI GCNGC 3 cut(s) 171, 300, 540
BlsI GCNGC 3 cut(s) 172, 301, 541
Bme1390I CCNGG 3 cut(s) 312, 576, 1197
Bme18I GGWCC 3 cut(s) 161, 317, 749
BmgT120I GGNCC 4 cut(s) 161, 317, 344, 749
BmiI GGNNCC 6 cut(s) 7, 163, 581, 675, 718, 751
BmrFI CCNGG 3 cut(s) 312, 576, 1197
BmrI ACTGGG 3 cut(s) 273, 351, 1003
BmsI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 977, 1282
BmuI ACTGGG 3 cut(s) 273, 351, 1003
BpiI GAAGAC 3 cut(s) 530, 1168, 1230
BpmI CTGGAG 3 cut(s) 333, 417, 858
Bpu10I CCTNAGC 2 cut(s) 27, 933
BpuEI CTTGAG 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 575, 707, 858
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 5 cut(s) 669, 670, 695, 713, 836
Bse1I ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1009, 1124
Bse3DI GCAATG 2 cut(s) 142, 534
BseBI CCWGG 3 cut(s) 312, 576, 1197
BseDI CCNNGG 3 cut(s) 575, 707, 858
BseGI GGATG 3 cut(s) 62, 968, 1042
BseLI CCNNNNNNNGG 5 cut(s) 669, 670, 695, 713, 836
BseMI GCAATG 2 cut(s) 142, 534
BseMII CTCAG 7 cut(s) 41, 284, 393, 510, 610, 693, 1302
BseNI ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1009, 1124
BseRI GAGGAG 2 cut(s) 366, 408
BseXI GCAGC 3 cut(s) 182, 286, 526
BseYI CCCAGC 2 cut(s) 150, 173
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 669, 670, 695, 713, 836
BsmAI GTCTC 3 cut(s) 376, 599, 1183
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 584
Bsp143I GATC 5 cut(s) 547, 599, 673, 1147, 1184
BspACI CCGC 4 cut(s) 221, 252, 503, 1295
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 7 cut(s) 40, 283, 394, 511, 609, 692, 1301
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 6 cut(s) 7, 163, 581, 675, 718, 751
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 2 cut(s) 668, 681
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 142, 534
BsrI ACTGG 7 cut(s) 279, 346, 372, 751, 841, 1009, 1124
BssECI CCNNGG 3 cut(s) 575, 707, 858
BssMI GATC 5 cut(s) 547, 599, 673, 1147, 1184
BssNAI GTATAC 1 cut(s) 125
BssT1I CCWWGG 2 cut(s) 707, 858
Bst1107I GTATAC 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 312, 576, 1197
Bst4CI ACNGT 4 cut(s) 629, 669, 804, 1210
Bst6I CTCTTC 2 cut(s) 466, 1306
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 933, 1288
BstF5I GGATG 3 cut(s) 62, 968, 1042
BstFNI CGCG 1 cut(s) 654
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 5 cut(s) 550, 602, 676, 1150, 1187
BstMAI GTCTC 3 cut(s) 376, 599, 1183
BstMBI GATC 5 cut(s) 547, 599, 673, 1147, 1184
BstMWI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 965, 1201
BstNI CCWGG 3 cut(s) 312, 576, 1197
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 3 cut(s) 310, 574, 1195
BstSFI CTRYAG 2 cut(s) 961, 1306
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 182, 286, 526
BstV2I GAAGAC 3 cut(s) 530, 1168, 1230
BstX2I RGATCY 2 cut(s) 599, 673
BstXI CCANNNNNNTGG 2 cut(s) 158, 173
BstYI RGATCY 2 cut(s) 599, 673
BstZ17I GTATAC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 582
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 3 cut(s) 62, 968, 1042
BtsIMutI CAGTG 3 cut(s) 516, 674, 988
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 4 cut(s) 161, 317, 344, 749
CseI GACGC 1 cut(s) 1119
Csp6I GTAC 2 cut(s) 84, 1206
CviAII CATG 5 cut(s) 737, 1033, 1228, 1350, 1355
CviQI GTAC 2 cut(s) 84, 1206
DdeI CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 933, 1288
DpnI GATC 5 cut(s) 549, 601, 675, 1149, 1186
DpnII GATC 5 cut(s) 547, 599, 673, 1147, 1184
Eam1104I CTCTTC 2 cut(s) 466, 1306
EarI CTCTTC 2 cut(s) 466, 1306
EciI GGCGGA 2 cut(s) 210, 241
Eco130I CCWWGG 2 cut(s) 707, 858
Eco24I GRGCYC 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 161, 317, 749
Eco57I CTGAAG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 310, 574, 1195
EcoT14I CCWWGG 2 cut(s) 707, 858
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 2 cut(s) 707, 858
FaeI CATG 5 cut(s) 740, 1036, 1231, 1353, 1358
FalI AAGNNNNNCTT 2 cut(s) 1153, 1185
FaqI GGGAC 1 cut(s) 95
FatI CATG 5 cut(s) 736, 1032, 1227, 1349, 1354
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 171, 300, 540
FokI GGATG 3 cut(s) 69, 955, 1049
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 171, 300, 540
FspBI CTAG 1 cut(s) 882
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 171, 300, 540
GsaI CCCAGC 2 cut(s) 154, 177
GsuI CTGGAG 3 cut(s) 333, 417, 858
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 720
HgaI GACGC 1 cut(s) 1119
HhaI GCGC 1 cut(s) 445
Hin1II CATG 5 cut(s) 740, 1036, 1231, 1353, 1358
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HindIII AAGCTT 1 cut(s) 1321
HinfI GANTC 3 cut(s) 770, 863, 1040
HpaII CCGG 1 cut(s) 720
HphI GGTGA 2 cut(s) 267, 300
Hpy166II GTNNAC 3 cut(s) 86, 125, 411
Hpy188I TCNGA 7 cut(s) 10, 599, 868, 912, 1117, 1272, 1291
Hpy188III TCNNGA 5 cut(s) 434, 647, 767, 812, 1182
Hpy8I GTNNAC 3 cut(s) 86, 125, 411
HpyAV CCTTC 7 cut(s) 234, 266, 270, 330, 403, 837, 1257
HpyCH4III ACNGT 4 cut(s) 629, 669, 804, 1210
HpyCH4V TGCA 8 cut(s) 116, 140, 338, 542, 587, 791, 800, 1106
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 965, 1201
HpyF3I CTNAG 8 cut(s) 27, 270, 402, 519, 596, 679, 933, 1288
Hsp92II CATG 5 cut(s) 740, 1036, 1231, 1353, 1358
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 5 cut(s) 547, 599, 673, 1147, 1184
LmnI GCTCC 4 cut(s) 208, 223, 421, 579
Lsp1109I GCAGC 3 cut(s) 182, 286, 526
LweI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 977, 1282
MaeI CTAG 1 cut(s) 882
MaeIII GTNAC 3 cut(s) 273, 284, 1210
MalI GATC 5 cut(s) 549, 601, 675, 1149, 1186
MboI GATC 5 cut(s) 547, 599, 673, 1147, 1184
MflI RGATCY 2 cut(s) 599, 673
MhlI GDGCHC 1 cut(s) 584
MluCI AATT 8 cut(s) 247, 437, 529, 606, 775, 950, 993, 1299
MlyI GAGTC 1 cut(s) 764
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 2 cut(s) 510, 848
MspA1I CMGCKG 2 cut(s) 173, 503
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 3 cut(s) 312, 576, 1197
MvaI CCWGG 3 cut(s) 312, 576, 1197
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 6 cut(s) 179, 188, 229, 797, 965, 1201
NdeII GATC 5 cut(s) 547, 599, 673, 1147, 1184
NlaIII CATG 5 cut(s) 740, 1036, 1231, 1353, 1358
NlaIV GGNNCC 6 cut(s) 7, 163, 581, 675, 718, 751
NmuCI GTSAC 2 cut(s) 273, 1210
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 1 cut(s) 1231
PciI ACATGT 1 cut(s) 1227
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 2 cut(s) 863, 1040
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 3 cut(s) 172, 301, 541
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PpuMI RGGWCCY 1 cut(s) 317
PscI ACATGT 1 cut(s) 1227
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 3 cut(s) 310, 574, 1195
PspFI CCCAGC 2 cut(s) 150, 173
PspGI CCWGG 3 cut(s) 310, 574, 1195
PspN4I GGNNCC 6 cut(s) 7, 163, 581, 675, 718, 751
PspPI GGNCC 4 cut(s) 161, 317, 344, 749
PspPPI RGGWCCY 1 cut(s) 317
PsuI RGATCY 2 cut(s) 599, 673
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 85, 1207
RsaNI GTAC 2 cut(s) 84, 1206
SaqAI TTAA 2 cut(s) 510, 848
SatI GCNGC 3 cut(s) 171, 300, 540
Sau3AI GATC 5 cut(s) 547, 599, 673, 1147, 1184
Sau96I GGNCC 4 cut(s) 161, 317, 344, 749
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 3 cut(s) 312, 576, 1197
SduI GDGCHC 1 cut(s) 584
SfaNI GCATC 9 cut(s) 125, 149, 245, 454, 626, 770, 859, 977, 1282
SfcI CTRYAG 2 cut(s) 961, 1306
SinI GGWCC 3 cut(s) 161, 317, 749
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
SpeI ACTAGT 1 cut(s) 881
Sse9I AATT 8 cut(s) 247, 437, 529, 606, 775, 950, 993, 1299
SsiI CCGC 4 cut(s) 221, 252, 503, 1295
SspMI CTAG 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 310, 574, 1195
StyI CCWWGG 2 cut(s) 707, 858
TaaI ACNGT 4 cut(s) 629, 669, 804, 1210
TaqI TCGA 3 cut(s) 773, 1183, 1256
TasI AATT 8 cut(s) 247, 437, 529, 606, 775, 950, 993, 1299
TfiI GAWTC 2 cut(s) 863, 1040
Tru1I TTAA 2 cut(s) 510, 848
Tru9I TTAA 2 cut(s) 510, 848
TscAI CASTG 3 cut(s) 523, 674, 988
TseFI GTSAC 2 cut(s) 273, 1210
TseI GCWGC 3 cut(s) 170, 299, 539
Tsp45I GTSAC 2 cut(s) 273, 1210
TspDTI ATGAA 6 cut(s) 372, 624, 1005, 1053, 1158, 1233
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 3 cut(s) 523, 674, 988
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 3 cut(s) 161, 317, 749
XapI RAATTY 2 cut(s) 247, 775
XceI RCATGY 1 cut(s) 1231
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 1 cut(s) 882
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.