Rh7CG330200

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012074
Physical Location & Seq
Reverse (-)
36351068 .. 36354408
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG330200.1

Sequence Viewer

Length: 1038 bp
ATGTTTGCAACTGGGCCGTACGCCAATGAAACACAACTGGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACAGCTCCTCTTACTCCCCCTCCAGAATTGGCGCATCTAACTACTCCCTCTTCCCCAGATGTGCCATTTGCTCGTTTCCTCTCATCTTCAGCAGATATTAAAAGCACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCAAGCTACATATTCGCTGTATCCTGGGAGCCCTGCTAGTAGTCTCAGATCTCCAATTTCAAGGGCATCAAATGACTGTTCTTCATCATCTTTTCCAGAACGCGATTTCCCCCCACAGTGGGATCCCTCAGTTTCTCCCCAAAATGGAAACTATCCAAGGAGTGGTTCTGGCAGGTTGTATGGGCATGACACAACTGGACCCTCTGTGGCATCTCAAGACTCGAATTTCTTCTGTCCTGCAACATTTGCACAGTTTTATCTGGATAATCCACCATTCCCTCATACTGGAGGAAGGTTAAGTGTTTCCAAGGATTCAGATGCTTACTCAACTAGTGGAAATGGAAATGGAAATGGAAGTCAGAACAGGCACAATAGAAGCCCTAAGCAAGATGTGGAAGAATTAGAAGCCTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAATTATTACCACCACCCAGTATGTTGAGATTACTGATGTCATGGATGAATCATTTACCATTGGCTCTCATAAATCTCCCCCAGAGGAAAGCGTAGAGCCTAAATCTGCCGTTGCAGGACGCTCTGACTTGCCAGTATTGTCCAATGCATATGAAGATCAAAAGTCCCGAAGACAGCCTTGTGATGTCTCTCGATCAACTACGCCTGGTATGCGTACTGTGACCAATGAAGAAGACATATTCTCAAAGATGGGGTCATCTAAATCGAGCAGAAGGTATCAGATGGGGCAATCTTGCTCAGATGCGGAAATCGACTACAGAAGAGGAAGAAGCTCACGAGAGGGCAAAGGGGATTTCACATGGCATGACAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.64

Weight (kDa)

5.11

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 383
AccII CGCG 1 cut(s) 324
AciI CCGC 1 cut(s) 965
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 20, 877
AfiI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
AgsI TTSAA 2 cut(s) 224, 282
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 2 cut(s) 244, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 86, 227, 993
AluI AGCT 3 cut(s) 86, 227, 993
Alw26I GTCTC 3 cut(s) 46, 269, 853
AlwI GGATC 2 cut(s) 338, 351
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 14, 419
AvaII GGWCC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BauI CACGAG 1 cut(s) 996
BbsI GAAGAC 3 cut(s) 200, 838, 900
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 904, 937
BceAI ACGGC 2 cut(s) 61, 755
BciT130I CCWGG 2 cut(s) 246, 867
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 46, 269, 853
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 258, 552
BfmI CTRYAG 2 cut(s) 631, 976
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 252
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 246, 867
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 14, 419
BmiI GGNNCC 3 cut(s) 251, 345, 421
BmrFI CCNGG 2 cut(s) 246, 867
BmrI ACTGGG 2 cut(s) 21, 673
BmsI GCATC 6 cut(s) 124, 296, 440, 529, 647, 952
BmuI ACTGGG 2 cut(s) 21, 673
BpiI GAAGAC 3 cut(s) 200, 838, 900
BpmI CTGGAG 2 cut(s) 87, 528
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 245, 377, 528
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
Bse1I ACTGG 6 cut(s) 16, 42, 421, 511, 679, 794
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 246, 867
BseDI CCNNGG 3 cut(s) 245, 377, 528
BseGI GGATG 2 cut(s) 638, 712
BseLI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 5 cut(s) 63, 180, 280, 363, 972
BseNI ACTGG 6 cut(s) 16, 42, 421, 511, 679, 794
BseRI GAGGAG 2 cut(s) 36, 78
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 16
BsiWI CGTACG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
BsmAI GTCTC 3 cut(s) 46, 269, 853
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 5 cut(s) 217, 269, 343, 817, 854
BspACI CCGC 1 cut(s) 965
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 5 cut(s) 64, 181, 279, 362, 971
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 251, 345, 421
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 2 cut(s) 338, 351
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 6 cut(s) 16, 42, 421, 511, 679, 794
BssECI CCNNGG 3 cut(s) 245, 377, 528
BssMI GATC 5 cut(s) 217, 269, 343, 817, 854
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 2 cut(s) 377, 528
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 2 cut(s) 246, 867
Bst4CI ACNGT 4 cut(s) 299, 339, 474, 880
Bst6I CTCTTC 2 cut(s) 136, 976
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 6 cut(s) 72, 189, 266, 349, 603, 958
BstF5I GGATG 2 cut(s) 638, 712
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 5 cut(s) 220, 272, 346, 820, 857
BstMAI GTCTC 3 cut(s) 46, 269, 853
BstMBI GATC 5 cut(s) 217, 269, 343, 817, 854
BstMWI GCNNNNNNNGC 3 cut(s) 467, 635, 871
BstNI CCWGG 2 cut(s) 246, 867
BstSCI CCNGG 2 cut(s) 244, 865
BstSFI CTRYAG 2 cut(s) 631, 976
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 3 cut(s) 200, 838, 900
BstX2I RGATCY 2 cut(s) 269, 343
BstYI RGATCY 2 cut(s) 269, 343
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 638, 712
BtsIMutI CAGTG 3 cut(s) 186, 344, 658
BveI ACCTGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 14, 419
CseI GACGC 1 cut(s) 789
Csp6I GTAC 2 cut(s) 19, 876
CviAII CATG 4 cut(s) 407, 703, 1020, 1025
CviQI GTAC 2 cut(s) 19, 876
DdeI CTNAG 6 cut(s) 72, 189, 266, 349, 603, 958
DpnI GATC 5 cut(s) 219, 271, 345, 819, 856
DpnII GATC 5 cut(s) 217, 269, 343, 817, 854
Eam1104I CTCTTC 2 cut(s) 136, 976
EarI CTCTTC 2 cut(s) 136, 976
Eco130I CCWWGG 2 cut(s) 377, 528
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 244, 865
EcoT14I CCWWGG 2 cut(s) 377, 528
EcoT22I ATGCAT 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 377, 528
FaeI CATG 4 cut(s) 410, 706, 1023, 1028
FalI AAGNNNNNCTT 2 cut(s) 823, 855
FaqI GGGAC 1 cut(s) 811
FatI CATG 4 cut(s) 406, 702, 1019, 1024
FauNDI CATATG 1 cut(s) 811
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 625, 719
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 258, 552
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 87, 528
HaeIII GGCC 1 cut(s) 16
HgaI GACGC 1 cut(s) 789
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 410, 706, 1023, 1028
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 3 cut(s) 440, 533, 710
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 6 cut(s) 269, 538, 582, 787, 942, 961
Hpy188III TCNNGA 7 cut(s) 104, 317, 437, 482, 828, 852, 996
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 73, 507, 927
HpyCH4III ACNGT 4 cut(s) 299, 339, 474, 880
HpyCH4V TGCA 6 cut(s) 8, 212, 461, 470, 776, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 635, 871
HpyF3I CTNAG 6 cut(s) 72, 189, 266, 349, 603, 958
Hsp92II CATG 4 cut(s) 410, 706, 1023, 1028
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 5 cut(s) 217, 269, 343, 817, 854
LmnI GCTCC 2 cut(s) 91, 249
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 6 cut(s) 124, 296, 440, 529, 647, 952
MaeI CTAG 2 cut(s) 258, 552
MaeIII GTNAC 1 cut(s) 880
MalI GATC 5 cut(s) 219, 271, 345, 819, 856
MboI GATC 5 cut(s) 217, 269, 343, 817, 854
MflI RGATCY 2 cut(s) 269, 343
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 6 cut(s) 107, 199, 276, 445, 620, 663
MlyI GAGTC 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 2 cut(s) 180, 518
MspR9I CCNGG 2 cut(s) 246, 867
MvaI CCWGG 2 cut(s) 246, 867
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 467, 635, 871
NdeI CATATG 1 cut(s) 811
NdeII GATC 5 cut(s) 217, 269, 343, 817, 854
NlaIII CATG 4 cut(s) 410, 706, 1023, 1028
NlaIV GGNNCC 3 cut(s) 251, 345, 421
NmuCI GTSAC 1 cut(s) 880
NsiI ATGCAT 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 533, 710
Pfl23II CGTACG 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 244, 865
PspGI CCWGG 2 cut(s) 244, 865
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 251, 345, 421
PspPI GGNCC 2 cut(s) 14, 419
PsuI RGATCY 2 cut(s) 269, 343
RsaI GTAC 2 cut(s) 20, 877
RsaNI GTAC 2 cut(s) 19, 876
SaqAI TTAA 2 cut(s) 180, 518
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 5 cut(s) 217, 269, 343, 817, 854
Sau96I GGNCC 2 cut(s) 14, 419
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 246, 867
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 65, 88, 229, 398, 518, 938, 995
SfaNI GCATC 6 cut(s) 124, 296, 440, 529, 647, 952
SfcI CTRYAG 2 cut(s) 631, 976
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 6 cut(s) 107, 199, 276, 445, 620, 663
SsiI CCGC 1 cut(s) 965
SspMI CTAG 2 cut(s) 258, 552
StyD4I CCNGG 2 cut(s) 244, 865
StyI CCWWGG 2 cut(s) 377, 528
TaaI ACNGT 4 cut(s) 299, 339, 474, 880
TaqI TCGA 4 cut(s) 443, 853, 926, 972
TasI AATT 6 cut(s) 107, 199, 276, 445, 620, 663
TfiI GAWTC 2 cut(s) 533, 710
Tru1I TTAA 2 cut(s) 180, 518
Tru9I TTAA 2 cut(s) 180, 518
TscAI CASTG 3 cut(s) 193, 344, 658
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 6 cut(s) 42, 294, 675, 723, 828, 903
TspRI CASTG 3 cut(s) 193, 344, 658
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 2 cut(s) 258, 552
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.