Rh7BG303100

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012074
Physical Location & Seq
Reverse (-)
28731248 .. 28734967
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG303100.1

Sequence Viewer

Length: 1017 bp
ATGTTTGCAACTGGGCCATACGCCAATGAAACACAACTGGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACAGCTCCTCTTACTCCCCCTCCAGAATTGGCACATCTAACTACTCCCTCTTCCCCAGATGTGCCATTTGCTCGTTTCCTCTCATCTTCAGCGGATATTAAAAGCACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCAAGCAACATATTCGCTGTATCCTGGGAGCCCTGCTAGTAGTCTCAGATCTCCAATTTCAAGGGCATCAAATGACTGTCGCGATTTCCCCCCACAGTGGGATCCCTCAGTTTCTCCCCAAAATGGAAACTATCCAAGGAGTGGTTCTGGCAGGTTGTATGGGCATGACACAACTGGACCCTCTGTGGCATCTCAAGACTCGAATTTCTTCTGTCCTGCAACATTTGCACAGTTTTATCTGGATAATCCTCCATTCCCTCATACTGGAGGAAGGTTAAGTGTTTCCAAGGATTCAGATGCTTACTCAACTAGTGGAAATGGAAATGGAAATGGAAGTCAGAACAGGCACAATAGAAGCCCTAAGCAAGATGTGGAAGAATTAGAAGCCTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAATTATTACCACCACCCAGTATGTTGAGATTACTGATGTCATGGACGAATCATTTACCATTGGCTCTCATAAATCTCCCCCAGAGGAAAGCGTAGAGCCTAAATCTGCCGTTGCAGGACGCTCTGACTTGCCAGTATTGTCCAATGGATATGAAGATCAAAAGTCCCGAAGACAGCCTTGTGATGTCTCTCGATCAACTACGCCTGGTATGCGTACTGTGGCCAATGAAGAAGACATATTCTCAAAGATGGGGTCATCTAAATCGAGCAGAAGGTATCAGATGGGGCAATCTTGCTCTGATGCGGAAATCGACTATAGAAGAGGAAGAAGCTTACGAGAGGGCAAAGGGGATTTCACATGGCATGACAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

36.9

Weight (kDa)

5.18

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 362
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 173, 944
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 5 cut(s) 318, 319, 344, 362, 485
AgsI TTSAA 2 cut(s) 224, 282
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 2 cut(s) 244, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 2 cut(s) 86, 972
AluI AGCT 2 cut(s) 86, 972
Alw26I GTCTC 3 cut(s) 46, 269, 832
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 2 cut(s) 14, 861
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 14, 398
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 863
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BbsI GAAGAC 3 cut(s) 200, 817, 879
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 883, 916
BceAI ACGGC 2 cut(s) 61, 734
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 2 cut(s) 246, 846
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 46, 269, 832
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 2 cut(s) 258, 531
BfmI CTRYAG 2 cut(s) 610, 955
BfuAI ACCTGC 1 cut(s) 363
BfuI GTATCC 1 cut(s) 252
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 246, 846
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 14, 398
BmiI GGNNCC 3 cut(s) 251, 324, 400
BmrFI CCNGG 2 cut(s) 246, 846
BmrI ACTGGG 2 cut(s) 21, 652
BmsI GCATC 5 cut(s) 296, 419, 508, 626, 931
BmuI ACTGGG 2 cut(s) 21, 652
BpiI GAAGAC 3 cut(s) 200, 817, 879
BpmI CTGGAG 2 cut(s) 87, 507
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 245, 356, 507
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 5 cut(s) 318, 319, 344, 362, 485
Bse1I ACTGG 6 cut(s) 16, 42, 400, 490, 658, 773
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 246, 846
BseDI CCNNGG 3 cut(s) 245, 356, 507
BseGI GGATG 1 cut(s) 617
BseLI CCNNNNNNNGG 5 cut(s) 318, 319, 344, 362, 485
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 4 cut(s) 63, 180, 280, 342
BseNI ACTGG 6 cut(s) 16, 42, 400, 490, 658, 773
BseRI GAGGAG 2 cut(s) 36, 78
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 16, 863
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 5 cut(s) 318, 319, 344, 362, 485
BsmAI GTCTC 3 cut(s) 46, 269, 832
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 2 cut(s) 16, 863
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 5 cut(s) 217, 269, 322, 796, 833
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 2 cut(s) 173, 944
BspANI GGCC 2 cut(s) 16, 863
BspCNI CTCAG 4 cut(s) 64, 181, 279, 341
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 251, 324, 400
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 2 cut(s) 317, 330
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 6 cut(s) 16, 42, 400, 490, 658, 773
BssECI CCNNGG 3 cut(s) 245, 356, 507
BssMI GATC 5 cut(s) 217, 269, 322, 796, 833
BssT1I CCWWGG 2 cut(s) 356, 507
Bst2UI CCWGG 2 cut(s) 246, 846
Bst4CI ACNGT 4 cut(s) 299, 318, 453, 859
Bst6I CTCTTC 2 cut(s) 136, 955
BstAPI GCANNNNNTGC 1 cut(s) 446
BstDEI CTNAG 5 cut(s) 72, 189, 266, 328, 582
BstF5I GGATG 1 cut(s) 617
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 5 cut(s) 220, 272, 325, 799, 836
BstMAI GTCTC 3 cut(s) 46, 269, 832
BstMBI GATC 5 cut(s) 217, 269, 322, 796, 833
BstMWI GCNNNNNNNGC 3 cut(s) 446, 614, 850
BstNI CCWGG 2 cut(s) 246, 846
BstSCI CCNGG 2 cut(s) 244, 844
BstSFI CTRYAG 2 cut(s) 610, 955
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 3 cut(s) 200, 817, 879
BstX2I RGATCY 2 cut(s) 269, 322
BstYI RGATCY 2 cut(s) 269, 322
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 16, 863
BtsCI GGATG 1 cut(s) 617
BtsIMutI CAGTG 3 cut(s) 186, 323, 637
BtuMI TCGCGA 1 cut(s) 303
BveI ACCTGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 14, 398
CseI GACGC 1 cut(s) 768
Csp6I GTAC 1 cut(s) 855
CviAII CATG 4 cut(s) 386, 682, 999, 1004
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 5 cut(s) 72, 189, 266, 328, 582
DpnI GATC 5 cut(s) 219, 271, 324, 798, 835
DpnII GATC 5 cut(s) 217, 269, 322, 796, 833
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 2 cut(s) 136, 955
EarI CTCTTC 2 cut(s) 136, 955
Eco130I CCWWGG 2 cut(s) 356, 507
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 244, 844
EcoT14I CCWWGG 2 cut(s) 356, 507
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 356, 507
FaeI CATG 4 cut(s) 389, 685, 1002, 1007
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FaqI GGGAC 1 cut(s) 790
FatI CATG 4 cut(s) 385, 681, 998, 1003
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 258, 531
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 87, 507
HaeIII GGCC 2 cut(s) 16, 863
HgaI GACGC 1 cut(s) 768
Hin1II CATG 4 cut(s) 389, 685, 1002, 1007
HindIII AAGCTT 1 cut(s) 970
HinfI GANTC 3 cut(s) 419, 512, 689
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 6 cut(s) 269, 517, 561, 766, 921, 940
Hpy188III TCNNGA 6 cut(s) 104, 302, 416, 461, 807, 831
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 73, 486, 906
HpyCH4III ACNGT 4 cut(s) 299, 318, 453, 859
HpyCH4V TGCA 5 cut(s) 8, 212, 440, 449, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 446, 614, 850
HpyF3I CTNAG 5 cut(s) 72, 189, 266, 328, 582
Hsp92II CATG 4 cut(s) 389, 685, 1002, 1007
Kzo9I GATC 5 cut(s) 217, 269, 322, 796, 833
LmnI GCTCC 2 cut(s) 91, 249
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 5 cut(s) 296, 419, 508, 626, 931
MaeI CTAG 2 cut(s) 258, 531
MalI GATC 5 cut(s) 219, 271, 324, 798, 835
MboI GATC 5 cut(s) 217, 269, 322, 796, 833
MflI RGATCY 2 cut(s) 269, 322
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 6 cut(s) 107, 199, 276, 424, 599, 642
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 1 cut(s) 413
Mox20I TGGCCA 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 428
MscI TGGCCA 1 cut(s) 863
MseI TTAA 2 cut(s) 180, 497
Msp20I TGGCCA 1 cut(s) 863
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 246, 846
MvaI CCWGG 2 cut(s) 246, 846
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 446, 614, 850
NdeII GATC 5 cut(s) 217, 269, 322, 796, 833
NlaIII CATG 4 cut(s) 389, 685, 1002, 1007
NlaIV GGNNCC 3 cut(s) 251, 324, 400
NruI TCGCGA 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 512, 689
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 244, 844
PspGI CCWGG 2 cut(s) 244, 844
PspN4I GGNNCC 3 cut(s) 251, 324, 400
PspPI GGNCC 2 cut(s) 14, 398
PsuI RGATCY 2 cut(s) 269, 322
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
SaqAI TTAA 2 cut(s) 180, 497
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 5 cut(s) 217, 269, 322, 796, 833
Sau96I GGNCC 2 cut(s) 14, 398
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 246, 846
SduI GDGCHC 1 cut(s) 254
SetI ASST 6 cut(s) 65, 88, 377, 497, 917, 974
SfaNI GCATC 5 cut(s) 296, 419, 508, 626, 931
SfcI CTRYAG 2 cut(s) 610, 955
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 6 cut(s) 107, 199, 276, 424, 599, 642
SsiI CCGC 2 cut(s) 173, 944
SspMI CTAG 2 cut(s) 258, 531
StyD4I CCNGG 2 cut(s) 244, 844
StyI CCWWGG 2 cut(s) 356, 507
TaaI ACNGT 4 cut(s) 299, 318, 453, 859
TaqI TCGA 4 cut(s) 422, 832, 905, 951
TasI AATT 6 cut(s) 107, 199, 276, 424, 599, 642
TfiI GAWTC 2 cut(s) 512, 689
Tru1I TTAA 2 cut(s) 180, 497
Tru9I TTAA 2 cut(s) 180, 497
TscAI CASTG 3 cut(s) 193, 323, 637
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 42, 654, 807, 882
TspRI CASTG 3 cut(s) 193, 323, 637
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 2 cut(s) 258, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.