Rh7DG311000

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012074
Physical Location & Seq
Reverse (-)
36430107 .. 36433752
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG311000.1

Sequence Viewer

Length: 1044 bp
ATGTTTGCAACTGGGCCATACGCCAATGAAACACAACTGGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACAGCTCCTCTTACTCCCCCTCCAGAATTGGCGCATCTAACTACTCCCTCTTCCCCAGATGTGCCATTTGCTCGTTTCCTCTCATCTTCAGCGGATATTAAAAGCACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCAAGCTACATATTCGCTGTATCCTGGGAGCCCTGCTAGTAGTCTCAGATCTCCAATTTCAAGGGCATCAAATGACTGTTCTTCATCATCTTTTCCAGAACGCGATTTCCCCCCACAGTGGGATCCCTCAGTTTCTCCCCAAAATGGAAACTATCCAAGGAGTGGTTCCGGCAGGTTGTATGGGCATGACACAACTGGACCCTCTGTGGCATCTCAAGACTCGAATTTCTTCTGTCCTGCAACATTTGCACAGTTTTATCTGGATAATCCACCATTCCCTCATACTGGAGGAAGGTTAAGTGTTTCCAAGGATTCAGATGCTTACTCAACTAGTGGAAATGGAAATGGAAATGGAAATGGAAGTCAGAACAGGCACAATAGAAGCCCTAAGCAAGATGTGGAAGAATTAGAAGCCTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAATTATTACCACCACCCAGTATGTTGAGATTACTGATGTCATGGATGAATCATTTACCATTGGCTCTCATAAATCTCCCCCAGAGGAAAGTGTAGAGCCTAAATCTGCCGTTGCAGGACGCTCTGACTTGCCAGTATTGTCCAATGGATATGAAGATCAAAAGCCCCGAAGACAGCCTTGTGATGTCTCTCGATCAACTACGCCTGGTATGCGTACTGTGACCAATGAAGAAGACATATTCTCAAAGATGGGGTCATCTAAATCGAGCAGAAGGTATCAGATGGGGCAATCTTGCTCAGATGCGGAAATTGACTACAGAAGAGGAAGAAGCTTACGAGAGGGCAAAGGGGATTTCACATGGCATGACAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

37.83

Weight (kDa)

5.11

Isoelectric Point (pI)

65.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 383
AccII CGCG 1 cut(s) 324
AciI CCGC 2 cut(s) 173, 971
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
AgsI TTSAA 2 cut(s) 224, 282
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 2 cut(s) 244, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 86, 227, 999
AluI AGCT 3 cut(s) 86, 227, 999
Alw26I GTCTC 3 cut(s) 46, 269, 859
AlwI GGATC 2 cut(s) 338, 351
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 905, 937
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 14, 419
AvaII GGWCC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BbsI GAAGAC 3 cut(s) 200, 844, 906
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 910, 943
BceAI ACGGC 2 cut(s) 61, 761
BciT130I CCWGG 2 cut(s) 246, 873
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 46, 269, 859
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 258, 552
BfmI CTRYAG 2 cut(s) 637, 982
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 252
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 246, 873
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 14, 419
BmiI GGNNCC 4 cut(s) 251, 345, 388, 421
BmrFI CCNGG 2 cut(s) 246, 873
BmrI ACTGGG 2 cut(s) 21, 679
BmsI GCATC 6 cut(s) 124, 296, 440, 529, 653, 958
BmuI ACTGGG 2 cut(s) 21, 679
BpiI GAAGAC 3 cut(s) 200, 844, 906
BpmI CTGGAG 2 cut(s) 87, 528
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 245, 377, 528
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
Bse1I ACTGG 6 cut(s) 16, 42, 421, 511, 685, 800
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 246, 873
BseDI CCNNGG 3 cut(s) 245, 377, 528
BseGI GGATG 2 cut(s) 644, 718
BseLI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 5 cut(s) 63, 180, 280, 363, 978
BseNI ACTGG 6 cut(s) 16, 42, 421, 511, 685, 800
BseRI GAGGAG 2 cut(s) 36, 78
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 390
BslI CCNNNNNNNGG 5 cut(s) 339, 340, 365, 383, 506
BsmAI GTCTC 3 cut(s) 46, 269, 859
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 5 cut(s) 217, 269, 343, 823, 860
BspACI CCGC 2 cut(s) 173, 971
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 5 cut(s) 64, 181, 279, 362, 977
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 4 cut(s) 251, 345, 388, 421
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 2 cut(s) 338, 351
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 6 cut(s) 16, 42, 421, 511, 685, 800
BssECI CCNNGG 3 cut(s) 245, 377, 528
BssMI GATC 5 cut(s) 217, 269, 343, 823, 860
BssT1I CCWWGG 2 cut(s) 377, 528
Bst2UI CCWGG 2 cut(s) 246, 873
Bst4CI ACNGT 4 cut(s) 299, 339, 474, 886
Bst6I CTCTTC 2 cut(s) 136, 982
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 6 cut(s) 72, 189, 266, 349, 609, 964
BstF5I GGATG 2 cut(s) 644, 718
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 5 cut(s) 220, 272, 346, 826, 863
BstMAI GTCTC 3 cut(s) 46, 269, 859
BstMBI GATC 5 cut(s) 217, 269, 343, 823, 860
BstMWI GCNNNNNNNGC 3 cut(s) 467, 641, 877
BstNI CCWGG 2 cut(s) 246, 873
BstSCI CCNGG 2 cut(s) 244, 871
BstSFI CTRYAG 2 cut(s) 637, 982
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 3 cut(s) 200, 844, 906
BstX2I RGATCY 2 cut(s) 269, 343
BstYI RGATCY 2 cut(s) 269, 343
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 644, 718
BtsIMutI CAGTG 3 cut(s) 186, 344, 664
BveI ACCTGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 14, 419
CseI GACGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 882
CviAII CATG 4 cut(s) 407, 709, 1026, 1031
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 6 cut(s) 72, 189, 266, 349, 609, 964
DpnI GATC 5 cut(s) 219, 271, 345, 825, 862
DpnII GATC 5 cut(s) 217, 269, 343, 823, 860
Eam1104I CTCTTC 2 cut(s) 136, 982
EarI CTCTTC 2 cut(s) 136, 982
Eco130I CCWWGG 2 cut(s) 377, 528
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 244, 871
EcoT14I CCWWGG 2 cut(s) 377, 528
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 377, 528
FaeI CATG 4 cut(s) 410, 712, 1029, 1034
FalI AAGNNNNNCTT 2 cut(s) 829, 861
FatI CATG 4 cut(s) 406, 708, 1025, 1030
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 631, 725
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 258, 552
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 87, 528
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 795
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 410, 712, 1029, 1034
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 997
HinfI GANTC 3 cut(s) 440, 533, 716
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 6 cut(s) 269, 538, 588, 793, 948, 967
Hpy188III TCNNGA 5 cut(s) 104, 317, 437, 482, 858
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 73, 507, 933
HpyCH4III ACNGT 4 cut(s) 299, 339, 474, 886
HpyCH4V TGCA 5 cut(s) 8, 212, 461, 470, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 467, 641, 877
HpyF3I CTNAG 6 cut(s) 72, 189, 266, 349, 609, 964
Hsp92II CATG 4 cut(s) 410, 712, 1029, 1034
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 5 cut(s) 217, 269, 343, 823, 860
LmnI GCTCC 2 cut(s) 91, 249
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 6 cut(s) 124, 296, 440, 529, 653, 958
MaeI CTAG 2 cut(s) 258, 552
MaeIII GTNAC 1 cut(s) 886
MalI GATC 5 cut(s) 219, 271, 345, 825, 862
MboI GATC 5 cut(s) 217, 269, 343, 823, 860
MflI RGATCY 2 cut(s) 269, 343
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 7 cut(s) 107, 199, 276, 445, 626, 669, 975
MlyI GAGTC 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 2 cut(s) 180, 518
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 2 cut(s) 246, 873
MvaI CCWGG 2 cut(s) 246, 873
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 467, 641, 877
NdeII GATC 5 cut(s) 217, 269, 343, 823, 860
NlaIII CATG 4 cut(s) 410, 712, 1029, 1034
NlaIV GGNNCC 4 cut(s) 251, 345, 388, 421
NmuCI GTSAC 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 533, 716
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 244, 871
PspGI CCWGG 2 cut(s) 244, 871
PspN4I GGNNCC 4 cut(s) 251, 345, 388, 421
PspPI GGNCC 2 cut(s) 14, 419
PsuI RGATCY 2 cut(s) 269, 343
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 180, 518
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 5 cut(s) 217, 269, 343, 823, 860
Sau96I GGNCC 2 cut(s) 14, 419
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 246, 873
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 65, 88, 229, 398, 518, 944, 1001
SfaNI GCATC 6 cut(s) 124, 296, 440, 529, 653, 958
SfcI CTRYAG 2 cut(s) 637, 982
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 7 cut(s) 107, 199, 276, 445, 626, 669, 975
SsiI CCGC 2 cut(s) 173, 971
SspMI CTAG 2 cut(s) 258, 552
StyD4I CCNGG 2 cut(s) 244, 871
StyI CCWWGG 2 cut(s) 377, 528
TaaI ACNGT 4 cut(s) 299, 339, 474, 886
TaqI TCGA 3 cut(s) 443, 859, 932
TasI AATT 7 cut(s) 107, 199, 276, 445, 626, 669, 975
TfiI GAWTC 2 cut(s) 533, 716
Tru1I TTAA 2 cut(s) 180, 518
Tru9I TTAA 2 cut(s) 180, 518
TscAI CASTG 3 cut(s) 193, 344, 664
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 6 cut(s) 42, 294, 681, 729, 834, 909
TspRI CASTG 3 cut(s) 193, 344, 664
Van91I CCANNNNNTGG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 2 cut(s) 258, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.