AT1G77090

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014267
Physical Location & Seq
Reverse (-)
28960312 .. 28961974
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77090.1

Sequence Viewer

Length: 783 bp
ATGATGGAAACAGCTCTGCTCCGGTACTGCGTCAACTTTTCCGGTCACAAGAAAATCTCTGCTCATCAAAGAAGTAATAGTGAGATTCCGAAAACGAGTCCGGGAGGATGCGAAGACGAGTGGTGTGCTAGGGTTTTGAGTAGAAGATCGGTAATGGCGTCAGGGTTGGTCTCCTCGACGACGGCTTTAGCATTTCCAAGGGAAGGATTGGCTGTCGTTAAACAAGGTCTTCTCGCTGGGAGAGTTCCTGGTCTGTCCGAACCTGATGAAGAAGGTTGGAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGGTACCTGTATCGATCGCTGATCTTGGTGGCACCGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCCTGTTCTTAGATTTGCAGATAACCTCGGGGACGATGTTAAGATTGAAAATATTGGACAACCAGCGAAGGTGATTAACGCGTTTGGACCAGAAGTTATTGGAGAAAACGTAGAAGGGAAGGTGTTAAGTTCCAATGTTGCAGAACACGATGGTAGACTCTATTACCAATTCGAGCTAGAGCCGCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATTCCGCATTGTTTAG

Protein Analysis

260

Amino Acids

28.5

Weight (kDa)

7.02

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 116 - 259 5.6e-13 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 379, 407
AccI GTMKAC 2 cut(s) 292, 622
AccII CGCG 1 cut(s) 548
AciI CCGC 3 cut(s) 650, 688, 772
AclWI GGATC 1 cut(s) 753
AcuI CTGAAG 1 cut(s) 770
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 3 cut(s) 26, 381, 660
AfiI CCNNNNNNNGG 2 cut(s) 203, 443
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 2 cut(s) 515, 725
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 247
AloI GAACNNNNNNTCC 2 cut(s) 748, 780
AluBI AGCT 5 cut(s) 14, 467, 643, 677, 761
AluI AGCT 5 cut(s) 14, 467, 643, 677, 761
Alw26I GTCTC 2 cut(s) 175, 727
AlwI GGATC 1 cut(s) 753
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 677
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp718I GGTACC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 554
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 550, 700
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 554
BanI GGYRCC 2 cut(s) 379, 407
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 3 cut(s) 120, 221, 713
BbvI GCAGC 1 cut(s) 664
BccI CCATC 1 cut(s) 611
BceAI ACGGC 2 cut(s) 198, 432
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 2 cut(s) 175, 727
BfaI CTAG 4 cut(s) 129, 432, 644, 762
BisI GCNGC 2 cut(s) 650, 678
BlsI GCNGC 2 cut(s) 651, 679
Bme1390I CCNGG 2 cut(s) 102, 249
Bme18I GGWCC 1 cut(s) 554
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 554
BmiI GGNNCC 3 cut(s) 360, 381, 409
BmrFI CCNGG 2 cut(s) 102, 249
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 3 cut(s) 120, 221, 713
BpuEI CTTGAG 2 cut(s) 348, 442
BpuMI CCSGG 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 197, 493
BsaWI WCCGGW 3 cut(s) 21, 41, 710
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 443
BseBI CCWGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 197, 493
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 203, 443
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 664
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 2 cut(s) 379, 407
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 5 cut(s) 22, 42, 101, 681, 711
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 203, 443
BsmAI GTCTC 2 cut(s) 175, 727
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 4 cut(s) 146, 390, 397, 745
BspACI CCGC 3 cut(s) 650, 688, 772
BspANI GGCC 1 cut(s) 447
BspDI ATCGAT 1 cut(s) 389
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 3 cut(s) 360, 381, 409
BspPI GGATC 1 cut(s) 753
BspT107I GGYRCC 2 cut(s) 379, 407
BspTNI GGTCTC 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 197, 493
BssMI GATC 4 cut(s) 146, 390, 397, 745
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 290, 719
Bst6I CTCTTC 2 cut(s) 725, 746
BstACI GRCGYC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 677
BstDEI CTNAG 1 cut(s) 476
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 548
BstKTI GATC 4 cut(s) 149, 393, 400, 748
BstMAI GTCTC 2 cut(s) 175, 727
BstMBI GATC 4 cut(s) 146, 390, 397, 745
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 2 cut(s) 649, 677
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 100, 247
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 3 cut(s) 120, 221, 713
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
Bsu15I ATCGAT 1 cut(s) 389
BsuRI GGCC 1 cut(s) 447
BsuTUI ATCGAT 1 cut(s) 389
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 554
ClaI ATCGAT 1 cut(s) 389
CseI GACGC 2 cut(s) 19, 147
Csp6I GTAC 3 cut(s) 25, 380, 659
CviAII CATG 2 cut(s) 317, 656
CviJI RGCY 9 cut(s) 14, 185, 212, 447, 467, 643, 649, 677, 761
CviKI_1 RGCY 9 cut(s) 14, 185, 212, 447, 467, 643, 649, 677, 761
CviQI GTAC 3 cut(s) 25, 380, 659
DdeI CTNAG 1 cut(s) 476
DpnI GATC 4 cut(s) 148, 392, 399, 747
DpnII GATC 4 cut(s) 146, 390, 397, 745
DriI GACNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 725, 746
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 2 cut(s) 725, 746
Eco130I CCWWGG 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 320, 659
FaiI YATR 3 cut(s) 286, 318, 657
FaqI GGGAC 1 cut(s) 512
FatI CATG 2 cut(s) 316, 655
FblI GTMKAC 2 cut(s) 292, 622
Fnu4HI GCNGC 2 cut(s) 650, 678
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 650, 678
FspBI CTAG 4 cut(s) 129, 432, 644, 762
GluI GCNGC 2 cut(s) 650, 678
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 447
HapII CCGG 5 cut(s) 22, 42, 101, 681, 711
HgaI GACGC 2 cut(s) 19, 147
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 2 cut(s) 320, 659
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 4 cut(s) 85, 97, 331, 624
HpaII CCGG 5 cut(s) 22, 42, 101, 681, 711
HphI GGTGA 2 cut(s) 550, 700
Hpy166II GTNNAC 3 cut(s) 34, 293, 623
Hpy188I TCNGA 3 cut(s) 90, 259, 750
Hpy188III TCNNGA 2 cut(s) 309, 365
Hpy8I GTNNAC 3 cut(s) 34, 293, 623
Hpy99I CGWCG 2 cut(s) 181, 184
HpyAV CCTTC 6 cut(s) 197, 266, 437, 529, 575, 580
HpyCH4III ACNGT 2 cut(s) 290, 719
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 3 cut(s) 485, 608, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 649, 677
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 576
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 320, 659
KpnI GGTACC 1 cut(s) 383
Kzo9I GATC 4 cut(s) 146, 390, 397, 745
LmnI GCTCC 2 cut(s) 24, 472
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 1 cut(s) 98
MaeI CTAG 4 cut(s) 129, 432, 644, 762
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 44, 706
MalI GATC 4 cut(s) 148, 392, 399, 747
MboI GATC 4 cut(s) 146, 390, 397, 745
MboII GAAGA 7 cut(s) 125, 156, 221, 281, 713, 742, 763
MflI RGATCY 1 cut(s) 745
MluCI AATT 1 cut(s) 635
MluI ACGCGT 1 cut(s) 546
MlyI GAGTC 3 cut(s) 106, 340, 618
MmeI TCCRAC 2 cut(s) 257, 308
MnlI CCTC 8 cut(s) 98, 184, 305, 370, 372, 503, 663, 747
MseI TTAA 4 cut(s) 219, 507, 543, 593
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 5 cut(s) 22, 42, 101, 681, 711
MspR9I CCNGG 2 cut(s) 102, 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 649, 677
NciI CCSGG 1 cut(s) 102
NdeII GATC 4 cut(s) 146, 390, 397, 745
NlaIII CATG 2 cut(s) 320, 659
NlaIV GGNNCC 3 cut(s) 360, 381, 409
NmuCI GTSAC 2 cut(s) 44, 706
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 2 cut(s) 651, 679
Ple19I CGATCG 1 cut(s) 393
PleI GAGTC 3 cut(s) 105, 339, 618
PpsI GAGTC 3 cut(s) 105, 339, 618
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 360, 381, 409
PspPI GGNCC 1 cut(s) 554
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
PsuI RGATCY 1 cut(s) 745
PvuI CGATCG 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 26, 381, 660
RsaNI GTAC 3 cut(s) 25, 380, 659
SaqAI TTAA 4 cut(s) 219, 507, 543, 593
SatI GCNGC 2 cut(s) 650, 678
Sau3AI GATC 4 cut(s) 146, 390, 397, 745
Sau96I GGNCC 1 cut(s) 554
SchI GAGTC 3 cut(s) 106, 340, 618
ScrFI CCNGG 2 cut(s) 102, 249
SfaNI GCATC 1 cut(s) 98
SinI GGWCC 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 363, 421
SmoI CTYRAG 2 cut(s) 363, 421
Sse9I AATT 1 cut(s) 635
SsiI CCGC 3 cut(s) 650, 688, 772
SspI AATATT 1 cut(s) 520
SspMI CTAG 4 cut(s) 129, 432, 644, 762
StyD4I CCNGG 2 cut(s) 100, 247
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 290, 719
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 176, 389, 639
TasI AATT 1 cut(s) 635
TatI WGTACW 1 cut(s) 658
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 4 cut(s) 219, 507, 543, 593
Tru9I TTAA 4 cut(s) 219, 507, 543, 593
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 2 cut(s) 44, 706
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 44, 706
TspDTI ATGAA 2 cut(s) 282, 756
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 554
XagI CCTNNNNNAGG 1 cut(s) 441
XmiI GTMKAC 2 cut(s) 292, 622
XspI CTAG 4 cut(s) 129, 432, 644, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.