RchiOBHm_Chr6g0277361

psbP domain-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014267
Physical Location & Seq
Forward (+)
39830953 .. 39832826
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24882

Sequence Viewer

Length: 831 bp
ATGAGAGCAGCCTTGTTTACCAGCTGCAGCTTTGCCTGGACTTATCAGCCAAAAGCAATCCCCTCCCACAATTTGCTTGTTCAATCTTCACTCGAACATGGAGCTTGCAGCACAAAATCCGAAGCGAGTTCAAGAGAAAGCGGTTTGGTTAATGGAGAAGCTGAGAAAGTCTCTGGGATTTTGAAGAGAAGATCAGTGGTGCTGTCTGGAGCTTCATTGGTTTCCTCTGCAGTGTTGGGTTTTCCAGGAGAGGGTTTGGCCGTGATTAAACAGGGTCTTCTAGCAGGAAGGATTCCCGGTCTGTCCGAACCAGATGAACAAGGTTGGAGGACATACCGCAGACCAGATGAGAAGTCCGGAGGGCACGGTGTTGGTTGGAGCCCTATCATCCCTTATATCTTCTCTGTTCCTCAAGATTGGGAAGAGGTTCCAGTATCAATAGCTGATCTTGGTGGTACAGAGATCGACCTGAGATTTGGCAGCGCCAAGGAGGGACGCCTGTCGGTCATTGTTGCTCCTGTTCTGAGATTTGCAGATAATCTTGATGGAGATGCAACAATTGAAAAAATTGGCCGTCCAGAGACGGTGATCAATGCATTTGGACCAGAAGTTATAGGGGAGAATGTGGAAGGGAAGGTAATGAGCATAAATGTTGTTCAAGATTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGTTCTGATCACAGCAACTGCAGCAGGGAATCGCCTGTACTTGTTTAATGTAACTGGAAGTGGTCTTCAATGGAAGAGGCATTACAAAGAGTTGAAGAAGATAGCAGACTCCTTTCGGGTAGTCTGA

Protein Analysis

276

Amino Acids

29.88

Weight (kDa)

6.25

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 132 - 275 8.6e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 141, 337
AcoI YGGCCR 2 cut(s) 258, 571
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 2 cut(s) 457, 743
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 7 cut(s) 83, 132, 184, 563, 659, 773, 799
AjnI CCWGG 2 cut(s) 35, 244
AluBI AGCT 6 cut(s) 24, 30, 104, 161, 212, 443
AluI AGCT 6 cut(s) 24, 30, 104, 161, 212, 443
Alw26I GTCTC 2 cut(s) 175, 575
AlwNI CAGNNNCTG 1 cut(s) 722
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 258, 571
ApeKI GCWGC 6 cut(s) 8, 24, 27, 108, 480, 725
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 598
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BbsI GAAGAC 2 cut(s) 269, 761
BbvI GCAGC 6 cut(s) 11, 20, 39, 120, 492, 737
BccI CCATC 1 cut(s) 539
BceAI ACGGC 2 cut(s) 245, 558
BciT130I CCWGG 2 cut(s) 37, 246
BclI TGATCA 2 cut(s) 588, 711
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 175, 575
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 3 cut(s) 25, 228, 723
BfoI RGCGCY 1 cut(s) 486
BisI GCNGC 6 cut(s) 9, 25, 28, 109, 481, 726
BlsI GCNGC 6 cut(s) 10, 26, 29, 110, 482, 727
Bme1390I CCNGG 3 cut(s) 37, 246, 297
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 3 cut(s) 380, 429, 696
BmrFI CCNGG 3 cut(s) 37, 246, 297
BmsI GCATC 1 cut(s) 541
BoxI GACNNNNGTC 1 cut(s) 499
BpiI GAAGAC 2 cut(s) 269, 761
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 431, 682, 763
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 2 cut(s) 37, 246
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 3 cut(s) 153, 461, 515
BseNI ACTGG 3 cut(s) 431, 682, 763
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 6 cut(s) 11, 20, 39, 120, 492, 737
BshFI GGCC 2 cut(s) 260, 573
BsiSI CCGG 2 cut(s) 297, 357
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 175, 575
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 2 cut(s) 260, 573
Bsp1286I GDGCHC 2 cut(s) 366, 383
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 191, 445, 462, 588, 711
BspACI CCGC 2 cut(s) 141, 337
BspANI GGCC 2 cut(s) 260, 573
BspCNI CTCAG 3 cut(s) 154, 462, 516
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 380, 429, 696
BspMAI CTGCAG 3 cut(s) 29, 232, 727
BsrI ACTGG 3 cut(s) 431, 682, 763
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 5 cut(s) 191, 445, 462, 588, 711
BssNI GRCGYC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 37, 246
Bst4CI ACNGT 2 cut(s) 368, 586
Bst6I CTCTTC 3 cut(s) 179, 417, 773
BstACI GRCGYC 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 162, 470, 524
BstF5I GGATG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 5 cut(s) 194, 448, 465, 591, 714
BstMAI GTCTC 2 cut(s) 175, 575
BstMBI GATC 5 cut(s) 191, 445, 462, 588, 711
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 2 cut(s) 37, 246
BstPAI GACNNNNGTC 1 cut(s) 499
BstSCI CCNGG 3 cut(s) 35, 244, 295
BstSFI CTRYAG 3 cut(s) 25, 228, 723
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 6 cut(s) 11, 20, 39, 120, 492, 737
BstV2I GAAGAC 2 cut(s) 269, 761
BsuRI GGCC 2 cut(s) 260, 573
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 201, 237
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 504
Csp6I GTAC 2 cut(s) 456, 742
CviAII CATG 2 cut(s) 98, 704
CviQI GTAC 2 cut(s) 456, 742
DdeI CTNAG 3 cut(s) 162, 470, 524
DpnI GATC 5 cut(s) 193, 447, 464, 590, 713
DpnII GATC 5 cut(s) 191, 445, 462, 588, 711
EaeI YGGCCR 2 cut(s) 258, 571
Eam1104I CTCTTC 3 cut(s) 179, 417, 773
EarI CTCTTC 3 cut(s) 179, 417, 773
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 35, 244
EcoT14I CCWWGG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 2 cut(s) 101, 707
FaiI YATR 8 cut(s) 99, 334, 396, 614, 647, 676, 687, 705
FaqI GGGAC 1 cut(s) 507
FatI CATG 2 cut(s) 97, 703
FbaI TGATCA 2 cut(s) 588, 711
Fnu4HI GCNGC 6 cut(s) 9, 25, 28, 109, 481, 726
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 6 cut(s) 9, 25, 28, 109, 481, 726
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 484
GluI GCNGC 6 cut(s) 9, 25, 28, 109, 481, 726
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 2 cut(s) 260, 573
HapII CCGG 2 cut(s) 297, 357
HgaI GACGC 1 cut(s) 504
HhaI GCGC 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 2 cut(s) 101, 707
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 4 cut(s) 292, 662, 733, 812
HpaII CCGG 2 cut(s) 297, 357
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 5 cut(s) 121, 307, 525, 711, 830
Hpy188III TCNNGA 8 cut(s) 132, 207, 357, 413, 542, 578, 659, 666
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 3 cut(s) 282, 623, 628
HpyCH4III ACNGT 2 cut(s) 368, 586
HpyCH4V TGCA 7 cut(s) 27, 108, 230, 533, 554, 596, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 3 cut(s) 162, 470, 524
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 2 cut(s) 101, 707
HspAI GCGC 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 356
Ksp22I TGATCA 2 cut(s) 588, 711
Kzo9I GATC 5 cut(s) 191, 445, 462, 588, 711
LmnI GCTCC 5 cut(s) 101, 209, 378, 520, 694
Lsp1109I GCAGC 6 cut(s) 11, 20, 39, 120, 492, 737
LweI GCATC 1 cut(s) 541
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 754
MalI GATC 5 cut(s) 193, 447, 464, 590, 713
MboI GATC 5 cut(s) 191, 445, 462, 588, 711
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 2 cut(s) 366, 383
MluCI AATT 3 cut(s) 70, 558, 567
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 3 cut(s) 305, 356, 672
Mph1103I ATGCAT 1 cut(s) 598
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 150, 267, 750
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 297, 357
MspR9I CCNGG 3 cut(s) 37, 246, 297
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 2 cut(s) 37, 246
MwoI GCNNNNNNNGC 1 cut(s) 725
NciI CCSGG 1 cut(s) 297
NdeII GATC 5 cut(s) 191, 445, 462, 588, 711
NlaIII CATG 2 cut(s) 101, 707
NlaIV GGNNCC 3 cut(s) 380, 429, 696
NsiI ATGCAT 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 292, 662, 733
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 6 cut(s) 10, 26, 29, 110, 482, 727
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
PshAI GACNNNNGTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 35, 244
PspGI CCWGG 2 cut(s) 35, 244
PspN4I GGNNCC 3 cut(s) 380, 429, 696
PspPI GGNCC 1 cut(s) 602
PstI CTGCAG 3 cut(s) 29, 232, 727
PstNI CAGNNNCTG 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 2 cut(s) 457, 743
RsaNI GTAC 2 cut(s) 456, 742
SaqAI TTAA 3 cut(s) 150, 267, 750
SatI GCNGC 6 cut(s) 9, 25, 28, 109, 481, 726
Sau3AI GATC 5 cut(s) 191, 445, 462, 588, 711
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 3 cut(s) 37, 246, 297
SduI GDGCHC 2 cut(s) 366, 383
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 3 cut(s) 25, 228, 723
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 3 cut(s) 70, 558, 567
SsiI CCGC 2 cut(s) 141, 337
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 3 cut(s) 35, 244, 295
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 368, 586
TaqI TCGA 2 cut(s) 93, 465
TaqII GACCGA 1 cut(s) 493
TasI AATT 3 cut(s) 70, 558, 567
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 3 cut(s) 292, 662, 733
Tru1I TTAA 3 cut(s) 150, 267, 750
Tru9I TTAA 3 cut(s) 150, 267, 750
TscAI CASTG 2 cut(s) 201, 237
TseI GCWGC 6 cut(s) 8, 24, 27, 108, 480, 725
TspDTI ATGAA 2 cut(s) 204, 330
TspRI CASTG 2 cut(s) 201, 237
VpaK11BI GGWCC 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.