Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000030.1

Orthogroup ID

OG0014267

Physical Location & Seq

Genomic Coordinates Reverse (-)

69109 .. 70425

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000030.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgaaagcagccttgtttaccagctgcagctttacctggacttatcagccaaaagcagtcccctcccacaatttgcttgttcaatcttcactcgagcatggagcttgcagcacaaaatccgaagcgagttcaagagcaagcggtttggttaatggagaagctgagaaagtctctgggattttgaagagaagatcagtggtgctgtctggagcttctttggtttcctctgcagtgttgggttttccaggagagggtttggccgtgattaaacagggtcttctagcaggaaggattcccggtctgtccgaaccagatgaacaaggttggaggacataccgcagaccagatgagaagtcgggagggcacggggttggttggagccctatcatcccttatatcttctctgttcctcaagattgggaagaggttccagtatcaatagctgatcttggtggtacagagatcgacctgagatttggcagcgccaaggagggacgcctgtcggtcattgttgctcctgttctgagatttgcagattatcttgatggagatgcaacaattgaaaaaattggccgtccagagacggtgatcaatgcatttggaccagaagttataggggagaatgtggaagggaaggtaatgagcataaatgttgttcaagattctggaagaacatattaccagtatgagttggagccacctcatgttctgatcacagcaactgcagcagggaatcgcctgtacttgtttaatgtaactggaagtggtcttcaatggaagaggcattacaaagagttgaagaagatagcagactcctttcgggtagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

276

Amino Acids

29.86

Weight (kDa)

6.54

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77090
fragaria_vesca	FvH4_2g14791
malus_domestica	MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica	Prupe.8G017800_v2.0.a1
pyrus_communis	pycom10g00810
rosa_chinensis	RchiOBHm_Chr6g0277361
rosa_laevigata	RLG00000013307 RLG00000029732
rosa_multiflora	Rmu_sc0000030.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191400
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana	Rw6G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	141, 337
AcoI	YGGCCR	2 cut(s)	258, 571
AcyI	GRCGYC	1 cut(s)	496
AfaI	GTAC	2 cut(s)	457, 743
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	7 cut(s)	83, 132, 184, 563, 659, 773, 799
AjnI	CCWGG	2 cut(s)	35, 244
AluBI	AGCT	6 cut(s)	24, 30, 104, 161, 212, 443
AluI	AGCT	6 cut(s)	24, 30, 104, 161, 212, 443
Alw26I	GTCTC	2 cut(s)	175, 575
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	258, 571
ApeKI	GCWGC	6 cut(s)	8, 24, 27, 108, 480, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	598
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BbsI	GAAGAC	2 cut(s)	269, 761
BbvI	GCAGC	6 cut(s)	11, 20, 39, 120, 492, 737
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	2 cut(s)	245, 558
BciT130I	CCWGG	2 cut(s)	37, 246
BclI	TGATCA	2 cut(s)	588, 711
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	175, 575
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	3 cut(s)	25, 228, 723
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	6 cut(s)	9, 25, 28, 109, 481, 726
BlsI	GCNGC	6 cut(s)	10, 26, 29, 110, 482, 727
Bme1390I	CCNGG	3 cut(s)	37, 246, 297
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	380, 429, 696
BmrFI	CCNGG	3 cut(s)	37, 246, 297
BmsI	GCATC	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	269, 761
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	431, 682, 763
BseBI	CCWGG	2 cut(s)	37, 246
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	153, 461, 515
BseNI	ACTGG	3 cut(s)	431, 682, 763
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	6 cut(s)	11, 20, 39, 120, 492, 737
BshFI	GGCC	2 cut(s)	260, 573
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	44, 507
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	175, 575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	44, 507
BsnI	GGCC	2 cut(s)	260, 573
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	366, 383
Bsp143I	GATC	5 cut(s)	191, 445, 462, 588, 711
BspACI	CCGC	2 cut(s)	141, 337
BspANI	GGCC	2 cut(s)	260, 573
BspCNI	CTCAG	3 cut(s)	154, 462, 516
BspLI	GGNNCC	3 cut(s)	380, 429, 696
BspMAI	CTGCAG	3 cut(s)	29, 232, 727
BsrI	ACTGG	3 cut(s)	431, 682, 763
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	5 cut(s)	191, 445, 462, 588, 711
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	37, 246
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	3 cut(s)	179, 417, 773
BstACI	GRCGYC	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	106, 139
BstDEI	CTNAG	3 cut(s)	162, 470, 524
BstF5I	GGATG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	5 cut(s)	194, 448, 465, 591, 714
BstMAI	GTCTC	2 cut(s)	175, 575
BstMBI	GATC	5 cut(s)	191, 445, 462, 588, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	725
BstNI	CCWGG	2 cut(s)	37, 246
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	35, 244, 295
BstSFI	CTRYAG	3 cut(s)	25, 228, 723
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	6 cut(s)	11, 20, 39, 120, 492, 737
BstV2I	GAAGAC	2 cut(s)	269, 761
BsuRI	GGCC	2 cut(s)	260, 573
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	201, 237
Cac8I	GCNNGC	2 cut(s)	106, 139
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	456, 742
CviAII	CATG	2 cut(s)	98, 704
CviQI	GTAC	2 cut(s)	456, 742
DdeI	CTNAG	3 cut(s)	162, 470, 524
DpnI	GATC	5 cut(s)	193, 447, 464, 590, 713
DpnII	GATC	5 cut(s)	191, 445, 462, 588, 711
EaeI	YGGCCR	2 cut(s)	258, 571
Eam1104I	CTCTTC	3 cut(s)	179, 417, 773
EarI	CTCTTC	3 cut(s)	179, 417, 773
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	35, 244
EcoT14I	CCWWGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	2 cut(s)	101, 707
FaiI	YATR	8 cut(s)	99, 334, 396, 614, 647, 676, 687, 705
FaqI	GGGAC	2 cut(s)	44, 507
FatI	CATG	2 cut(s)	97, 703
FbaI	TGATCA	2 cut(s)	588, 711
Fnu4HI	GCNGC	6 cut(s)	9, 25, 28, 109, 481, 726
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	6 cut(s)	9, 25, 28, 109, 481, 726
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	6 cut(s)	9, 25, 28, 109, 481, 726
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	260, 573
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	101, 707
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HinfI	GANTC	4 cut(s)	292, 662, 733, 812
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	5 cut(s)	121, 307, 525, 711, 830
Hpy188III	TCNNGA	8 cut(s)	132, 207, 357, 413, 542, 578, 659, 666
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	282, 623, 628
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	7 cut(s)	27, 108, 230, 533, 554, 596, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	725
HpyF3I	CTNAG	3 cut(s)	162, 470, 524
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	101, 707
HspAI	GCGC	1 cut(s)	483
Ksp22I	TGATCA	2 cut(s)	588, 711
Kzo9I	GATC	5 cut(s)	191, 445, 462, 588, 711
LmnI	GCTCC	5 cut(s)	101, 209, 378, 520, 694
Lsp1109I	GCAGC	6 cut(s)	11, 20, 39, 120, 492, 737
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	5 cut(s)	193, 447, 464, 590, 713
MboI	GATC	5 cut(s)	191, 445, 462, 588, 711
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	366, 383
MluCI	AATT	3 cut(s)	70, 558, 567
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	3 cut(s)	305, 356, 672
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	150, 267, 750
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	37, 246, 297
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	37, 246
MwoI	GCNNNNNNNGC	1 cut(s)	725
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	5 cut(s)	191, 445, 462, 588, 711
NlaIII	CATG	2 cut(s)	101, 707
NlaIV	GGNNCC	3 cut(s)	380, 429, 696
NsiI	ATGCAT	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	292, 662, 733
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	6 cut(s)	10, 26, 29, 110, 482, 727
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PshAI	GACNNNNGTC	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	35, 244
PspGI	CCWGG	2 cut(s)	35, 244
PspN4I	GGNNCC	3 cut(s)	380, 429, 696
PspPI	GGNCC	1 cut(s)	602
PspXI	VCTCGAGB	1 cut(s)	92
PstI	CTGCAG	3 cut(s)	29, 232, 727
PstNI	CAGNNNCTG	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	2 cut(s)	457, 743
RsaNI	GTAC	2 cut(s)	456, 742
SaqAI	TTAA	3 cut(s)	150, 267, 750
SatI	GCNGC	6 cut(s)	9, 25, 28, 109, 481, 726
Sau3AI	GATC	5 cut(s)	191, 445, 462, 588, 711
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	3 cut(s)	37, 246, 297
SduI	GDGCHC	2 cut(s)	366, 383
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	3 cut(s)	25, 228, 723
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	92, 411
SmoI	CTYRAG	2 cut(s)	92, 411
Sse9I	AATT	3 cut(s)	70, 558, 567
SsiI	CCGC	2 cut(s)	141, 337
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	35, 244, 295
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	93, 465
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	3 cut(s)	70, 558, 567
TatI	WGTACW	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	292, 662, 733
Tru1I	TTAA	3 cut(s)	150, 267, 750
Tru9I	TTAA	3 cut(s)	150, 267, 750
TscAI	CASTG	2 cut(s)	201, 237
TseI	GCWGC	6 cut(s)	8, 24, 27, 108, 480, 725
TspDTI	ATGAA	2 cut(s)	17, 330
TspRI	CASTG	2 cut(s)	201, 237
VpaK11BI	GGWCC	1 cut(s)	602
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.