Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002953

Physical Location & Seq

Genomic Coordinates Forward (+)

15190093 .. 15196335

Gene Structure 6243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGACTCCCCTTCTTCTTCTACTCCCCTGCTTTCTTCTCTGCGTTGTAACCGCCACTTCAAACATCCCCAAGCATCATGTAGTTTACATGGGAAGTTCGTTATCCGATGGAAATAGAAGAGATGCTGAATCTGCAGAATCAGGTTATTTGGAAATGCTGTCATCCATTGTTCCAAGCCATCAGAAAGAAAGAACATCTATAATTCACAAGTATAATCATGCTTTTAGAGGATTCTCTGCCATGCTTACAGAGAGTGAAGCTTCAGTTCTGTCAGGGCATGATGATATCGTGTCCATATTCCCCGACTCAATACTTGAACTACACACAACGCGTTCTTGGGATTTCATACAAGAAGCGGCGGCAGAATCAGGCAGAGTCTCATATCGGGCACGCCCAACAACCACTAGTGATGACGTTATTATTGGAATGATAGACACAGGTATATGGCCCGAGTCTCCAAGTTTCAATGATGAGGGAATTGGTGCAGTCCCTTCAAGATGGAAAGGGGTCTGTATGGAGGGCCCCGACTTCAAGAAATCTAACTGTAACAGAAAGTTGATAGGTGCAAGATACTACAATATGCAAATGACAATGATTGGTAACCAGAGCCATTTAGCTGCACCAAAAGGCTCACCAAGAGATTTTGTTGGCCACGGGACTCACACTACATCCACAGCTGCGGGTGCACGAGTTCCCAATGCTAGTTACTATGGCTTGGCACAAGGTACAGCAAAGGGAGGCTTGCCATCAGCTAGGATTGCATGCTACAAGGCATGCTCGGATGTCGGTTGTTCTGGTGCCACCATATTGAAGGCCATTGATGATGCAATTAGTGATGGAGTAGACATGATATCTATTTCGATTGGGATGAGCTCACTATTTCAACCCGACTACTTAACTGACCCCATAGCCATTGGAACATTTCATGCTGAACAAATGGGAGTCATGGTCATTTGCTCTGGAGGAAATGATGGTCCTGATCCTTACACTGTTGTTAACACAGCGCCATGGATCTTCACTGTTGCAGCTTCTAACATTGATAGGGATTTCCAATCTACTGTAGTCCTCGGAAATGGGAGAACTTTCACGGGTTCAGCCATTAATTTCTCCAATCTGACTCGCTCGAGGACATATCCTCTTGTGTTTGGAAAGGATGCTGCTGCTAATTTTACACCTGTTTCAGAAGCAAGAAATTGCTATCCAGGATCATTTGATCCAGAAAAGGTAGTTAACAAAATTGTTGTGTGTGTTGCTGATGATCCGACTGTTTCAAGAAAAATCAAGAAATTAGTTGTAGAAGATGCTAAAGCCAAAGGGTTGATTTTGATCGATGAAGATGAGAAAAGTGTGCCTTTTGATTCAGGCGTTTTCCCATTCTCAGAAGTTGGAGATATTGCAGGGTTTCAGATTCTCAATTACATTAACTCTACCAAAAACCCTAAAGCGACAATCCTCCCAACAGTTGACATTCACAGGTATAGACCTGCACCAACAGTCGCGTATTTTTCATCGAGAGGTCCTGCACAGCTTACCGAAAATGTTCTCAAGCCTGACATAATGGCTCCGGGAGTGGCCATTTTAGCTGCCATCAGTCCCGAGAATGAATCAGGGAGTGTCCCCCATGGAGAAAAGCCATCCAAGTTCTCCATAAAGTCTGGAACATCAATGGCTTGCCCACATGTAACAGGCGCTGCTGCATTCATCAAGTCAGTGCATCGTGGATGGACATCTTCCATGATCAAATCAGCACTTATGACAACAGCAACCATGTACAACAACATGAAAAAGCCTTTGATAAACAGCACTAACAACTATGCAAATCCACATGAAGTGGGGGTTGGAGAAATAAACCCAATCAAGGCTCTTAACCCAGGTCTAGTCTTTGAAACCATAACAGAAAATTATCTTGAGTTCCTCTGTTATTATGGCTACAAGGAGAAGAATATAAGATCAATGTCAAACACAAAGTTCAACTGCCCGAAAATCTCTACTGAAGAACTCATCTCTAATATCAACTACCCATCAATCTCTGTTAGTAAACTGAACCGGCACGAACCTGTAATGACAATTAAAAGAACTGCAACCAATGTCGGAGCCCCGAATTCTACATATATTGCAAAGGTGAATGCTCCTGTAGGCTTAGTAGTCAAGGTTCTACCAGAGAAGATAGTTTTTGCTGAAGGTGTGAGGAAGGTGTCTTTCCAAGTCTCATTTAATGGCAAGGAGGCTCCTACTGGCTACAGTTTTGGGTCAATAACATGGTTTGATGGTCGACATTCAGTTAATACTGTGTTTGGTGTGAATGTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

770

Amino Acids

83.2

Weight (kDa)

7.25

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	26 - 108	1.5e-14	Peptidase inhibitor I9
Peptidase_S8	PF00082	137 - 595	1.2e-43	Subtilase family
fn3_6	PF17766	670 - 763	5.5e-23	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21480 AT1G21480
fragaria_vesca	FvH4_2g14790
malus_domestica	MD05G1012600.v1.1 MD10G1012500.v1.1
prunus_persica	Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1
pyrus_communis	pycom05g00740 pycom05g00750 pycom10g00820
rosa_chinensis	RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351
rosa_laevigata	RLG00000013308 RLG00000029731
rosa_multiflora	Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100
rosa_wichuraiana	Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1492
AccB1I	GGYRCC	1 cut(s)	797
AccI	GTMKAC	2 cut(s)	843, 2272
AccII	CGCG	2 cut(s)	331, 1499
AciI	CCGC	4 cut(s)	51, 356, 359, 680
AclWI	GGATC	5 cut(s)	974, 1019, 1208, 1213, 1253
AcoI	YGGCCR	2 cut(s)	649, 1572
AcsI	RAATTY	1 cut(s)	2101
AcuI	CTGAAG	3 cut(s)	246, 2013, 2199
AfaI	GTAC	2 cut(s)	727, 1772
AfiI	CCNNNNNNNGG	1 cut(s)	1858
AflIII	ACRYGT	2 cut(s)	329, 1678
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	1201, 1870
AjuI	GAANNNNNNNTTGG	2 cut(s)	1821, 1853
AluBI	AGCT	8 cut(s)	260, 617, 677, 752, 873, 1028, 1528, 1583
AluI	AGCT	8 cut(s)	260, 617, 677, 752, 873, 1028, 1528, 1583
Alw21I	GWGCWC	2 cut(s)	688, 875
Alw26I	GTCTC	3 cut(s)	382, 459, 2212
Alw44I	GTGCAC	1 cut(s)	684
AlwI	GGATC	5 cut(s)	974, 1019, 1208, 1213, 1253
AlwNI	CAGNNNCTG	1 cut(s)	1691
Ama87I	CYCGRG	3 cut(s)	449, 1123, 1595
AoxI	GGCC	5 cut(s)	446, 520, 649, 813, 1572
ApaI	GGGCCC	1 cut(s)	524
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	8 cut(s)	617, 677, 1025, 1157, 1160, 1583, 1691, 1694
ApoI	RAATTY	1 cut(s)	2101
AseI	ATTAAT	1 cut(s)	1101
Asp700I	GAANNNNTTC	1 cut(s)	1539
AspLEI	GCGC	2 cut(s)	1006, 1691
AspS9I	GGNCC	5 cut(s)	447, 520, 521, 974, 1517
AsuC2I	CCSGG	1 cut(s)	1566
AsuHPI	GGTGA	2 cut(s)	624, 2134
AvaI	CYCGRG	3 cut(s)	449, 1123, 1595
AvaII	GGWCC	2 cut(s)	974, 1517
BaeGI	GKGCMC	3 cut(s)	391, 524, 688
BalI	TGGCCA	2 cut(s)	651, 1574
BanI	GGYRCC	1 cut(s)	797
BanII	GRGCYC	3 cut(s)	524, 875, 2098
BauI	CACGAG	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	688, 875
BbvI	GCAGC	8 cut(s)	604, 664, 1037, 1144, 1147, 1570, 1678, 1681
BciT130I	CCWGG	2 cut(s)	1203, 1872
BclI	TGATCA	1 cut(s)	1737
BcnI	CCSGG	1 cut(s)	1566
BcoDI	GTCTC	3 cut(s)	382, 459, 2212
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	4 cut(s)	405, 702, 753, 1877
BfmI	CTRYAG	4 cut(s)	132, 1059, 2133, 2239
BfoI	RGCGCY	2 cut(s)	1007, 1692
BfuAI	ACCTGC	1 cut(s)	1492
Bme1390I	CCNGG	3 cut(s)	1203, 1566, 1872
Bme18I	GGWCC	2 cut(s)	974, 1517
BmeT110I	CYCGRG	3 cut(s)	449, 1123, 1595
BmgT120I	GGNCC	5 cut(s)	447, 520, 521, 974, 1517
BmiI	GGNNCC	6 cut(s)	522, 523, 799, 1563, 2095, 2229
BmrFI	CCNGG	3 cut(s)	1203, 1566, 1872
BmsI	GCATC	6 cut(s)	82, 112, 814, 1144, 1291, 1723
BpmI	CTGGAG	1 cut(s)	981
BpuEI	CTTGAG	2 cut(s)	1529, 1928
BpuMI	CCSGG	1 cut(s)	1566
Bsa29I	ATCGAT	1 cut(s)	1329
BsaBI	GATNNNNATC	2 cut(s)	1325, 1726
BsaJI	CCNNGG	5 cut(s)	652, 1007, 1066, 1621, 1870
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	1 cut(s)	1858
Bse118I	RCCGGY	1 cut(s)	2046
Bse1I	ACTGG	1 cut(s)	2239
Bse8I	GATNNNNATC	2 cut(s)	1325, 1726
BseBI	CCWGG	2 cut(s)	1203, 1872
BseCI	ATCGAT	1 cut(s)	1329
BseDI	CCNNGG	5 cut(s)	652, 1007, 1066, 1621, 1870
BseGI	GGATG	8 cut(s)	63, 161, 668, 787, 873, 1159, 1634, 1727
BseJI	GATNNNNATC	2 cut(s)	1325, 1726
BseLI	CCNNNNNNNGG	1 cut(s)	1858
BseMII	CTCAG	1 cut(s)	1392
BseNI	ACTGG	1 cut(s)	2239
BseSI	GKGCMC	3 cut(s)	391, 524, 688
BseXI	GCAGC	8 cut(s)	604, 664, 1037, 1144, 1147, 1570, 1678, 1681
BsgI	GTGCAG	4 cut(s)	504, 603, 1470, 1506
Bsh1236I	CGCG	2 cut(s)	331, 1499
BshFI	GGCC	5 cut(s)	448, 522, 651, 815, 1574
BshNI	GGYRCC	1 cut(s)	797
BshVI	ATCGAT	1 cut(s)	1329
BsiHKAI	GWGCWC	2 cut(s)	688, 875
BsiHKCI	CYCGRG	3 cut(s)	449, 1123, 1595
BsiSI	CCGG	2 cut(s)	1565, 2047
BslFI	GGGAC	4 cut(s)	473, 670, 1578, 1601
BslI	CCNNNNNNNGG	1 cut(s)	1858
BsmAI	GTCTC	3 cut(s)	382, 459, 2212
BsmFI	GGGAC	4 cut(s)	473, 670, 1578, 1601
BsmI	GAATGC	2 cut(s)	1697, 2131
BsnI	GGCC	5 cut(s)	448, 522, 651, 815, 1574
BsoBI	CYCGRG	3 cut(s)	449, 1123, 1595
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	5 cut(s)	391, 524, 688, 875, 2098
Bsp1407I	TGTACA	1 cut(s)	1770
Bsp143I	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
Bsp19I	CCATGG	2 cut(s)	1007, 1621
BspACI	CCGC	4 cut(s)	51, 356, 359, 680
BspANI	GGCC	5 cut(s)	448, 522, 651, 815, 1574
BspCNI	CTCAG	1 cut(s)	1391
BspDI	ATCGAT	1 cut(s)	1329
BspFNI	CGCG	2 cut(s)	331, 1499
BspLI	GGNNCC	6 cut(s)	522, 523, 799, 1563, 2095, 2229
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	1492
BspPI	GGATC	5 cut(s)	974, 1019, 1208, 1213, 1253
BspT107I	GGYRCC	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	2046
BsrGI	TGTACA	1 cut(s)	1770
BsrI	ACTGG	1 cut(s)	2239
BssAI	RCCGGY	1 cut(s)	2046
BssECI	CCNNGG	5 cut(s)	652, 1007, 1066, 1621, 1870
BssMI	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	2 cut(s)	1007, 1621
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	2 cut(s)	1203, 1872
Bst4CI	ACNGT	9 cut(s)	545, 991, 1021, 1060, 1267, 1462, 1495, 2243, 2290
Bst6I	CTCTTC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	1770
BstC8I	GCNNGC	5 cut(s)	391, 743, 763, 775, 1672
BstDEI	CTNAG	2 cut(s)	1378, 2140
BstDSI	CCRYGG	3 cut(s)	652, 1007, 1621
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	8 cut(s)	63, 161, 668, 787, 873, 1159, 1634, 1727
BstFNI	CGCG	2 cut(s)	331, 1499
BstH2I	RGCGCY	2 cut(s)	1007, 1692
BstHHI	GCGC	2 cut(s)	1006, 1691
BstKTI	GATC	8 cut(s)	982, 1014, 1208, 1216, 1261, 1329, 1740, 1952
BstMAI	GTCTC	3 cut(s)	382, 459, 2212
BstMBI	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 683, 758, 1580
BstNI	CCWGG	2 cut(s)	1203, 1872
BstNSI	RCATGY	3 cut(s)	765, 777, 1682
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	3 cut(s)	1201, 1564, 1870
BstSFI	CTRYAG	4 cut(s)	132, 1059, 2133, 2239
BstSLI	GKGCMC	3 cut(s)	391, 524, 688
BstUI	CGCG	2 cut(s)	331, 1499
BstV1I	GCAGC	8 cut(s)	604, 664, 1037, 1144, 1147, 1570, 1678, 1681
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
Bsu15I	ATCGAT	1 cut(s)	1329
BsuRI	GGCC	5 cut(s)	448, 522, 651, 815, 1574
BsuTUI	ATCGAT	1 cut(s)	1329
BtgI	CCRYGG	3 cut(s)	652, 1007, 1621
BtsCI	GGATG	8 cut(s)	63, 161, 668, 787, 873, 1159, 1634, 1727
BtsIMutI	CAGTG	3 cut(s)	987, 1017, 1716
BveI	ACCTGC	1 cut(s)	1492
Cac8I	GCNNGC	5 cut(s)	391, 743, 763, 775, 1672
CaiI	CAGNNNCTG	1 cut(s)	1691
CfoI	GCGC	2 cut(s)	1006, 1691
Cfr10I	RCCGGY	1 cut(s)	2046
Cfr13I	GGNCC	5 cut(s)	447, 520, 521, 974, 1517
ClaI	ATCGAT	1 cut(s)	1329
Csp6I	GTAC	2 cut(s)	726, 1771
CviQI	GTAC	2 cut(s)	726, 1771
DdeI	CTNAG	2 cut(s)	1378, 2140
DpnI	GATC	8 cut(s)	981, 1013, 1207, 1215, 1260, 1328, 1739, 1951
DpnII	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
EaeI	YGGCCR	2 cut(s)	649, 1572
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	873
Eco130I	CCWWGG	2 cut(s)	1007, 1621
Eco24I	GRGCYC	3 cut(s)	524, 875, 2098
Eco32I	GATATC	2 cut(s)	286, 852
Eco47I	GGWCC	2 cut(s)	974, 1517
Eco53kI	GAGCTC	1 cut(s)	873
Eco57I	CTGAAG	3 cut(s)	246, 2013, 2199
Eco88I	CYCGRG	3 cut(s)	449, 1123, 1595
Eco91I	GGTNACC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	873
EcoO109I	RGGNCCY	3 cut(s)	520, 521, 1517
EcoO65I	GGTNACC	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	2101
EcoRII	CCWGG	2 cut(s)	1201, 1870
EcoRV	GATATC	2 cut(s)	286, 852
EcoT14I	CCWWGG	2 cut(s)	1007, 1621
EcoT38I	GRGCYC	3 cut(s)	524, 875, 2098
ErhI	CCWWGG	2 cut(s)	1007, 1621
FalI	AAGNNNNNCTT	4 cut(s)	725, 757, 1336, 1368
FaqI	GGGAC	4 cut(s)	473, 670, 1578, 1601
FauI	CCCGC	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	1737
FblI	GTMKAC	2 cut(s)	843, 2272
FokI	GGATG	8 cut(s)	50, 148, 655, 794, 880, 1166, 1621, 1734
FriOI	GRGCYC	3 cut(s)	524, 875, 2098
FspBI	CTAG	4 cut(s)	405, 702, 753, 1877
GlaI	GCGC	2 cut(s)	1005, 1690
GsuI	CTGGAG	1 cut(s)	981
HaeII	RGCGCY	2 cut(s)	1007, 1692
HaeIII	GGCC	5 cut(s)	448, 522, 651, 815, 1574
HapII	CCGG	2 cut(s)	1565, 2047
HhaI	GCGC	2 cut(s)	1006, 1691
Hin6I	GCGC	2 cut(s)	1004, 1689
HinP1I	GCGC	2 cut(s)	1004, 1689
HincII	GTYRAC	4 cut(s)	997, 1231, 1465, 2273
HindII	GTYRAC	4 cut(s)	997, 1231, 1465, 2273
HindIII	AAGCTT	1 cut(s)	258
HpaI	GTTAAC	2 cut(s)	997, 1231
HpaII	CCGG	2 cut(s)	1565, 2047
HphI	GGTGA	2 cut(s)	624, 2134
Hpy166II	GTNNAC	8 cut(s)	85, 686, 844, 997, 1231, 1465, 2039, 2273
Hpy8I	GTNNAC	8 cut(s)	85, 686, 844, 997, 1231, 1465, 2039, 2273
HpyAV	CCTTC	5 cut(s)	20, 501, 805, 2174, 2185
HpyCH4III	ACNGT	9 cut(s)	545, 991, 1021, 1060, 1267, 1462, 1495, 2243, 2290
HpyCH4IV	ACGT	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 683, 758, 1580
HpyF3I	CTNAG	2 cut(s)	1378, 2140
HpySE526I	ACGT	1 cut(s)	414
HspAI	GCGC	2 cut(s)	1004, 1689
Ksp22I	TGATCA	1 cut(s)	1737
KspAI	GTTAAC	2 cut(s)	997, 1231
Kzo9I	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
LmnI	GCTCC	4 cut(s)	1567, 2093, 2134, 2233
Lsp1109I	GCAGC	8 cut(s)	604, 664, 1037, 1144, 1147, 1570, 1678, 1681
LweI	GCATC	6 cut(s)	82, 112, 814, 1144, 1291, 1723
MaeI	CTAG	4 cut(s)	405, 702, 753, 1877
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	5 cut(s)	46, 545, 599, 704, 1681
MalI	GATC	8 cut(s)	981, 1013, 1207, 1215, 1260, 1328, 1739, 1951
MboI	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	5 cut(s)	391, 524, 688, 875, 2098
MlsI	TGGCCA	2 cut(s)	651, 1574
MluI	ACGCGT	1 cut(s)	329
MluNI	TGGCCA	2 cut(s)	651, 1574
MlyI	GAGTC	6 cut(s)	299, 384, 461, 652, 951, 1111
MmeI	TCCRAC	4 cut(s)	1286, 1366, 1819, 2071
Mox20I	TGGCCA	2 cut(s)	651, 1574
MroXI	GAANNNNTTC	1 cut(s)	1539
MscI	TGGCCA	2 cut(s)	651, 1574
MseI	TTAA	9 cut(s)	896, 996, 1101, 1230, 1422, 1866, 2070, 2214, 2283
Msp20I	TGGCCA	2 cut(s)	651, 1574
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	1565, 2047
MspR9I	CCNGG	3 cut(s)	1203, 1566, 1872
Mva1269I	GAATGC	2 cut(s)	1697, 2131
MvaI	CCWGG	2 cut(s)	1203, 1872
MvnI	CGCG	2 cut(s)	331, 1499
MwoI	GCNNNNNNNGC	4 cut(s)	131, 683, 758, 1580
NciI	CCSGG	1 cut(s)	1566
NcoI	CCATGG	2 cut(s)	1007, 1621
NdeII	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
NlaIV	GGNNCC	6 cut(s)	522, 523, 799, 1563, 2095, 2229
NspI	RCATGY	3 cut(s)	765, 777, 1682
PaeI	GCATGC	2 cut(s)	765, 777
PaeR7I	CTCGAG	1 cut(s)	1123
PciI	ACATGT	1 cut(s)	1678
PctI	GAATGC	2 cut(s)	1697, 2131
PdmI	GAANNNNTTC	1 cut(s)	1539
PfeI	GAWTC	7 cut(s)	128, 137, 231, 365, 1358, 1408, 1604
PfoI	TCCNGGA	2 cut(s)	1201, 1564
PleI	GAGTC	6 cut(s)	299, 383, 460, 652, 950, 1111
PpsI	GAGTC	6 cut(s)	299, 383, 460, 652, 950, 1111
PpuMI	RGGWCCY	1 cut(s)	1517
PscI	ACATGT	1 cut(s)	1678
PshBI	ATTAAT	1 cut(s)	1101
Psp124BI	GAGCTC	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	1517
Psp6I	CCWGG	2 cut(s)	1201, 1870
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	1201, 1870
PspN4I	GGNNCC	6 cut(s)	522, 523, 799, 1563, 2095, 2229
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	5 cut(s)	447, 520, 521, 974, 1517
PspPPI	RGGWCCY	1 cut(s)	1517
PspXI	VCTCGAGB	1 cut(s)	1123
PsrI	GAACNNNNNNTAC	2 cut(s)	2136, 2168
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	1691
PsuI	RGATCY	1 cut(s)	1011
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	727, 1772
RsaNI	GTAC	2 cut(s)	726, 1771
SacI	GAGCTC	1 cut(s)	875
SalI	GTCGAC	1 cut(s)	2271
SaqAI	TTAA	9 cut(s)	896, 996, 1101, 1230, 1422, 1866, 2070, 2214, 2283
Sau3AI	GATC	8 cut(s)	979, 1011, 1205, 1213, 1258, 1326, 1737, 1949
Sau96I	GGNCC	5 cut(s)	447, 520, 521, 974, 1517
SchI	GAGTC	6 cut(s)	299, 384, 461, 652, 951, 1111
ScrFI	CCNGG	3 cut(s)	1203, 1566, 1872
SduI	GDGCHC	5 cut(s)	391, 524, 688, 875, 2098
SfaNI	GCATC	6 cut(s)	82, 112, 814, 1144, 1291, 1723
SfcI	CTRYAG	4 cut(s)	132, 1059, 2133, 2239
Sfr274I	CTCGAG	1 cut(s)	1123
SinI	GGWCC	2 cut(s)	974, 1517
SlaI	CTCGAG	1 cut(s)	1123
SmlI	CTYRAG	3 cut(s)	1123, 1544, 1907
SmoI	CTYRAG	3 cut(s)	1123, 1544, 1907
SpeI	ACTAGT	1 cut(s)	404
SphI	GCATGC	2 cut(s)	765, 777
SsiI	CCGC	4 cut(s)	51, 356, 359, 680
SspMI	CTAG	4 cut(s)	405, 702, 753, 1877
SstI	GAGCTC	1 cut(s)	875
StyD4I	CCNGG	3 cut(s)	1201, 1564, 1870
StyI	CCWWGG	2 cut(s)	1007, 1621
TaaI	ACNGT	9 cut(s)	545, 991, 1021, 1060, 1267, 1462, 1495, 2243, 2290
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	5 cut(s)	860, 1124, 1329, 1511, 2272
TatI	WGTACW	1 cut(s)	1770
TauI	GCSGC	2 cut(s)	359, 362
TfiI	GAWTC	7 cut(s)	128, 137, 231, 365, 1358, 1408, 1604
Tru1I	TTAA	9 cut(s)	896, 996, 1101, 1230, 1422, 1866, 2070, 2214, 2283
Tru9I	TTAA	9 cut(s)	896, 996, 1101, 1230, 1422, 1866, 2070, 2214, 2283
TscAI	CASTG	3 cut(s)	994, 1024, 1716
TseI	GCWGC	8 cut(s)	617, 677, 1025, 1157, 1160, 1583, 1691, 1694
TspDTI	ATGAA	8 cut(s)	334, 914, 1347, 1497, 1617, 1690, 1796, 1842
TspRI	CASTG	3 cut(s)	994, 1024, 1716
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	2 cut(s)	974, 1517
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	1 cut(s)	2101
XceI	RCATGY	3 cut(s)	765, 777, 1682
XhoI	CTCGAG	1 cut(s)	1123
XmiI	GTMKAC	2 cut(s)	843, 2272
XmnI	GAANNNNTTC	1 cut(s)	1539
XspI	CTAG	4 cut(s)	405, 702, 753, 1877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.