Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040563.1

Orthogroup ID

OG0002953

Physical Location & Seq

Genomic Coordinates Forward (+)

174 .. 581

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040563.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgctgggaagcgtaaacagcaaagcccgaccatacagtgcgcagcaccaccaacagcctctctgcacccgcaagcaccagatcggagccctcctcttggtagccaccaccgtcttcttcaccaagctcctcgaccgctcctcactcccctgctccttcacccccgccgatcccgtcaccgcttcacggagctccgtccacgtcaccaatggcggagacctcttgtggccccaccgcgggtacggctccgtcatcgacctcaagatttacgtctacgatgagcgcgagatcgacggcctcaaggccttgatgtccggcagggatggtgccattgactccacctcttgcttgaaaggccagtggggcactcaggtaagcattttctatctgctagttcaattgcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin NAM

Protein Analysis

135

Amino Acids

14.88

Weight (kDa)

9.12

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21480 AT1G21480
fragaria_vesca	FvH4_2g14790
malus_domestica	MD05G1012600.v1.1 MD10G1012500.v1.1
prunus_persica	Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1
pyrus_communis	pycom05g00740 pycom05g00750 pycom10g00820
rosa_chinensis	RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351
rosa_laevigata	RLG00000013308 RLG00000029731
rosa_multiflora	Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100
rosa_wichuraiana	Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	237, 285
AciI	CCGC	8 cut(s)	70, 136, 165, 180, 213, 235, 237, 403
AclWI	GGATC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	97, 186, 236, 237
AgsI	TTSAA	2 cut(s)	352, 398
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	2 cut(s)	127, 192
AluI	AGCT	2 cut(s)	127, 192
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	4 cut(s)	227, 295, 303, 355
ApeKI	GCWGC	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	43, 285
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	4 cut(s)	112, 151, 169, 196
BaeGI	GKGCMC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	91, 194
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	2 cut(s)	259, 310
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	4 cut(s)	88, 230, 247, 328
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpuEI	CTTGAG	2 cut(s)	245, 284
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 186, 236, 237
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	97, 186, 236, 237
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	3 cut(s)	83, 119, 130
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	237, 285
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	229, 297, 305, 357
BshNI	GGYRCC	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	97, 186, 236, 237
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	229, 297, 305, 357
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	91, 194, 368
Bsp143I	GATC	3 cut(s)	81, 169, 288
BspACI	CCGC	8 cut(s)	70, 136, 165, 180, 213, 235, 237, 403
BspANI	GGCC	4 cut(s)	229, 297, 305, 357
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	237, 285
BspLI	GGNNCC	4 cut(s)	88, 230, 247, 328
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	210
BsrBI	CCGCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	81, 169, 288
Bst4CI	ACNGT	2 cut(s)	38, 112
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	237, 285
BstHHI	GCGC	2 cut(s)	43, 285
BstKTI	GATC	3 cut(s)	84, 172, 291
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	81, 169, 288
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 243, 354, 363
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	237, 285
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	229, 297, 305, 357
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	43, 365
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	2 cut(s)	43, 285
Cfr13I	GGNCC	1 cut(s)	228
Cfr42I	CCGCGG	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	241
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	83, 171, 290
DpnII	GATC	3 cut(s)	81, 169, 288
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	91, 194
Eco31I	GGTCTC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	192
EcoT38I	GRGCYC	2 cut(s)	91, 194
FaiI	YATR	1 cut(s)	34
FauI	CCCGC	3 cut(s)	77, 172, 230
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	2 cut(s)	91, 194
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	42
GlaI	GCGC	2 cut(s)	42, 284
GluI	GCNGC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	229, 297, 305, 357
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	2 cut(s)	43, 285
Hin6I	GCGC	2 cut(s)	41, 283
HinP1I	GCGC	2 cut(s)	41, 283
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	4 cut(s)	112, 151, 169, 196
Hpy166II	GTNNAC	3 cut(s)	16, 199, 274
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	3 cut(s)	16, 199, 274
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	38, 112
HpyCH4IV	ACGT	2 cut(s)	201, 270
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 243, 354, 363
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	201, 270
HspAI	GCGC	2 cut(s)	41, 283
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	81, 169, 288
LmnI	GCTCC	7 cut(s)	86, 132, 143, 158, 189, 197, 251
LpnPI	CCDG	6 cut(s)	92, 163, 304, 328, 356, 371
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	201, 270
MaeIII	GTNAC	2 cut(s)	175, 202
MalI	GATC	3 cut(s)	83, 171, 290
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	3 cut(s)	81, 169, 288
MboII	GAAGA	2 cut(s)	106, 109
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	91, 194, 368
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	9 cut(s)	69, 101, 104, 140, 151, 230, 269, 308, 352
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	237, 285
MwoI	GCNNNNNNNGC	4 cut(s)	18, 243, 354, 363
NdeII	GATC	3 cut(s)	81, 169, 288
NlaIV	GGNNCC	4 cut(s)	88, 230, 247, 328
NmuCI	GTSAC	2 cut(s)	175, 202
NsbI	TGCGCA	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	88, 230, 247, 328
PspPI	GGNCC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	238
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	81, 169, 288
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	91, 194, 368
SetI	ASST	8 cut(s)	129, 194, 204, 222, 261, 273, 344, 375
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	260, 299
SmoI	CTYRAG	2 cut(s)	260, 299
Sse9I	AATT	1 cut(s)	398
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	8 cut(s)	70, 136, 165, 180, 213, 235, 237, 403
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	38, 112
TaiI	ACGT	2 cut(s)	204, 273
TaqI	TCGA	3 cut(s)	132, 255, 291
TasI	AATT	1 cut(s)	398
TscAI	CASTG	2 cut(s)	43, 365
TseFI	GTSAC	2 cut(s)	175, 202
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	175, 202
TspGWI	ACGGA	3 cut(s)	184, 202, 238
TspRI	CASTG	2 cut(s)	43, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.