Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002953

Physical Location & Seq

Genomic Coordinates Reverse (-)

937332 .. 938967

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTAGTGCAGGGTGATCGGACTGATAAGAAAGATACAAGTGCCTTTAATACGTGGAAAGATATCATAATTCCTGGGAATGTTGAGGACGGTATGACCACAAATGGGGCCACCTTGGTCCACCCTTTGCCTATACCAAAGCGGAAGTATCTAGCAAACTATTTAGGCCGTGCACAAGGAAAGGTTGGCCGTCTTAAGTTGATAGAGCTTTCAAGGAAATTTCCAGATAAGTGTGTACCTGTGATATTATCAGATCAAGTAGAACTGCCTTTCCAAAATGTTGTTGACTACACCCAGATATCAATTAAATGGCCATCCACTCGAATAGGTCCCGAGCTTTTGCAGTACCTAGAGTCAATACCAGATGAATATATAGAAGGGATGATAAGCCGGGGCAGACAAGTAAGATGTTTATGGACCTATGCTTCAGAATCAGCTTCATGTTCGGCAATGCATGCGATTCTTTGGGAGCTTCAGAGGAAAGTTAGGCTGTTTCACCAGTCTTCGGAAACATTCTGGTTGCACAATGGATCTGTTGTAAATAGAAACTTGGTCGAATTTTCGGAGTGGAGACTGCCAATGCCTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin NAM

Protein Analysis

198

Amino Acids

22.61

Weight (kDa)

8.76

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21480 AT1G21480
fragaria_vesca	FvH4_2g14790
malus_domestica	MD05G1012600.v1.1 MD10G1012500.v1.1
prunus_persica	Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1
pyrus_communis	pycom05g00740 pycom05g00750 pycom10g00820
rosa_chinensis	RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351
rosa_laevigata	RLG00000013308 RLG00000029731
rosa_multiflora	Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100
rosa_wichuraiana	Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	2 cut(s)	187, 311
AcsI	RAATTY	2 cut(s)	218, 557
AcuI	CTGAAG	2 cut(s)	411, 458
AfaI	GTAC	2 cut(s)	237, 347
AfiI	CCNNNNNNNGG	2 cut(s)	105, 505
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	73
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
AluBI	AGCT	4 cut(s)	208, 337, 437, 472
AluI	AGCT	4 cut(s)	208, 337, 437, 472
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	565
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	4 cut(s)	108, 166, 187, 311
ApaLI	GTGCAC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	218, 557
AspS9I	GGNCC	4 cut(s)	108, 118, 329, 417
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	26, 488
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	3 cut(s)	118, 329, 417
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	153, 174
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	2 cut(s)	152, 350
BfrI	CTTAAG	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	75, 392
Bme18I	GGWCC	3 cut(s)	118, 329, 417
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	108, 118, 329, 417
BmiI	GGNNCC	2 cut(s)	109, 331
BmrFI	CCNGG	2 cut(s)	75, 392
BpiI	GAAGAC	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	74, 114, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 505
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	74, 114, 391
BseGI	GGATG	2 cut(s)	314, 387
BseLI	CCNNNNNNNGG	2 cut(s)	105, 505
BseMI	GCAATG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	110, 168, 189, 313
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	105, 505
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	110, 168, 189, 313
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	16, 253, 530
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	4 cut(s)	110, 168, 189, 313
BspLI	GGNNCC	2 cut(s)	109, 331
BspPI	GGATC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	74, 114, 391
BssMI	GATC	3 cut(s)	16, 253, 530
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	314, 387
BstKTI	GATC	3 cut(s)	19, 256, 533
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	3 cut(s)	16, 253, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	73, 390
BstSLI	GKGCMC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	110, 168, 189, 313
BtsCI	GGATG	2 cut(s)	314, 387
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	4 cut(s)	108, 118, 329, 417
Csp6I	GTAC	2 cut(s)	236, 346
CviAII	CATG	2 cut(s)	441, 455
CviQI	GTAC	2 cut(s)	236, 346
DpnI	GATC	3 cut(s)	18, 255, 532
DpnII	GATC	3 cut(s)	16, 253, 530
EaeI	YGGCCR	2 cut(s)	187, 311
Eco130I	CCWWGG	1 cut(s)	114
Eco32I	GATATC	2 cut(s)	64, 300
Eco47I	GGWCC	3 cut(s)	118, 329, 417
Eco57I	CTGAAG	2 cut(s)	411, 458
Eco88I	CYCGRG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	73
EcoRV	GATATC	2 cut(s)	64, 300
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	444, 458
FaiI	YATR	9 cut(s)	68, 95, 134, 372, 374, 415, 423, 442, 456
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	2 cut(s)	440, 454
FokI	GGATG	2 cut(s)	301, 394
FspBI	CTAG	2 cut(s)	152, 350
HaeIII	GGCC	4 cut(s)	110, 168, 189, 313
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	2 cut(s)	444, 458
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	353, 431, 460
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	2 cut(s)	26, 488
Hpy166II	GTNNAC	4 cut(s)	121, 173, 236, 286
Hpy188I	TCNGA	6 cut(s)	21, 253, 430, 477, 508, 565
Hpy188III	TCNNGA	2 cut(s)	224, 332
Hpy8I	GTNNAC	4 cut(s)	121, 173, 236, 286
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	10, 173, 343, 454, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	444, 458
Kzo9I	GATC	3 cut(s)	16, 253, 530
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	60, 87, 237, 252, 308, 375, 404, 502, 512
MaeI	CTAG	2 cut(s)	152, 350
MaeII	ACGT	1 cut(s)	53
MalI	GATC	3 cut(s)	18, 255, 532
MboI	GATC	3 cut(s)	16, 253, 530
MboII	GAAGA	1 cut(s)	495
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	4 cut(s)	69, 218, 303, 557
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	2 cut(s)	79, 471
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	3 cut(s)	48, 195, 306
Msp20I	TGGCCA	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	75, 392
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	3 cut(s)	16, 253, 530
NlaIII	CATG	2 cut(s)	444, 458
NlaIV	GGNNCC	2 cut(s)	109, 331
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	431, 460
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	109, 331
PspPI	GGNCC	4 cut(s)	108, 118, 329, 417
PspPPI	RGGWCCY	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	2 cut(s)	237, 347
RsaNI	GTAC	2 cut(s)	236, 346
SaqAI	TTAA	3 cut(s)	48, 195, 306
Sau3AI	GATC	3 cut(s)	16, 253, 530
Sau96I	GGNCC	4 cut(s)	108, 118, 329, 417
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	75, 392
SduI	GDGCHC	1 cut(s)	175
SinI	GGWCC	3 cut(s)	118, 329, 417
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	69, 218, 303, 557
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	152, 350
StyD4I	CCNGG	2 cut(s)	73, 390
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	322, 555
TasI	AATT	4 cut(s)	69, 218, 303, 557
TfiI	GAWTC	2 cut(s)	431, 460
Tru1I	TTAA	3 cut(s)	48, 195, 306
Tru9I	TTAA	3 cut(s)	48, 195, 306
TspDTI	ATGAA	2 cut(s)	381, 429
Vha464I	CTTAAG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	171
VpaK11BI	GGWCC	3 cut(s)	118, 329, 417
XapI	RAATTY	2 cut(s)	218, 557
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	2 cut(s)	152, 350
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.