pycom05g00750

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002953
Physical Location & Seq
Reverse (-)
940951 .. 941274
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00750.1

Sequence Viewer

Length: 324 bp
ATGAATGTTGATTATAGGACTGGGACAGGGAGGGGACATCTAATGTTGGGACAGAAAACCTTAACTCATTCCCTTCTTCCTCAGAAGCAGAGCTGCAGAAGAACCCCACTGCCATCCAGCACTGATGATACTCTGAAAATGGGAAGCGTAAATAACAAAGCCCGACCATTCATCACGCAGCACCACCAGCATCCTATGTGCACCCGCACGCACCAGATCGGAGCCCTCCTTTTGGTCGCCGCCTCCTTCTTCTTGACTAGCCTCTTAGGCCGCTCCTTCATCCCATTACATATTAAATCGATGGACAAGAACGGCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin NAM

Protein Analysis

108

Amino Acids

11.88

Weight (kDa)

10.71

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AciI CCGC 3 cut(s) 205, 240, 271
AfiI CCNNNNNNNGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 199
AoxI GGCC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 93, 178
BaeGI GKGCMC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 80, 190
BccI CCATC 2 cut(s) 121, 295
BfaI CTAG 2 cut(s) 258, 322
BfmI CTRYAG 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 4 cut(s) 94, 179, 240, 271
BlsI GCNGC 4 cut(s) 95, 180, 241, 272
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 299
BseGI GGATG 3 cut(s) 113, 190, 279
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 80, 190
BshFI GGCC 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 203
BslFI GGGAC 3 cut(s) 37, 48, 63
BslI CCNNNNNNNGG 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 37, 48, 63
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 203, 226
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 3 cut(s) 205, 240, 271
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 223
BspMAI CTGCAG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 25
BssMI GATC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 81, 265
BstF5I GGATG 3 cut(s) 113, 190, 279
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 2 cut(s) 187, 267
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 80, 190
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 299
BtsCI GGATG 3 cut(s) 113, 190, 279
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 107, 120
Cac8I GCNNGC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 299
CviJI RGCY 6 cut(s) 93, 161, 224, 261, 270, 321
CviKI_1 RGCY 6 cut(s) 93, 161, 224, 261, 270, 321
DdeI CTNAG 2 cut(s) 81, 265
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 226
FaiI YATR 3 cut(s) 15, 197, 291
FaqI GGGAC 3 cut(s) 37, 48, 63
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 4 cut(s) 94, 179, 240, 271
FokI GGATG 3 cut(s) 100, 177, 266
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 4 cut(s) 94, 179, 240, 271
FspBI CTAG 2 cut(s) 258, 322
GluI GCNGC 4 cut(s) 94, 179, 240, 271
HaeIII GGCC 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 84, 135, 221
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 83, 256, 286
HpyCH4V TGCA 2 cut(s) 96, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 267
HpyF3I CTNAG 2 cut(s) 81, 265
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 221, 278
LpnPI CCDG 5 cut(s) 6, 12, 130, 200, 227
Lsp1109I GCAGC 2 cut(s) 80, 190
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 258, 322
MalI GATC 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 273
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 68, 111, 241
MhlI GDGCHC 2 cut(s) 203, 226
MnlI CCTC 5 cut(s) 24, 90, 236, 253, 272
MseI TTAA 2 cut(s) 62, 294
MwoI GCNNNNNNNGC 2 cut(s) 187, 267
NdeII GATC 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 223
PkrI GCNGC 4 cut(s) 95, 180, 241, 272
PspN4I GGNNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 62, 294
SatI GCNGC 4 cut(s) 94, 179, 240, 271
Sau3AI GATC 1 cut(s) 216
SduI GDGCHC 2 cut(s) 203, 226
SetI ASST 2 cut(s) 62, 95
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 94
SsiI CCGC 3 cut(s) 205, 240, 271
SspMI CTAG 2 cut(s) 258, 322
TaqI TCGA 1 cut(s) 299
TauI GCSGC 2 cut(s) 242, 273
Tru1I TTAA 2 cut(s) 62, 294
Tru9I TTAA 2 cut(s) 62, 294
TscAI CASTG 2 cut(s) 114, 127
TseI GCWGC 2 cut(s) 93, 178
TspDTI ATGAA 3 cut(s) 17, 160, 268
TspRI CASTG 2 cut(s) 114, 127
VneI GTGCAC 1 cut(s) 199
XspI CTAG 2 cut(s) 258, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.