Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002953

Physical Location & Seq

Genomic Coordinates Forward (+)

22734705 .. 22747184

Gene Structure 12480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACTTTACCGGCGTCGGTGAAAGTCATGCCCCTTGCAAACTCCTCACCAGTACGCAATCCCCCAAACCTAATAGTCAAAACCAGACCTTCCTGCGAGTTCTCCCCCGCAAGTTCTTCTTCCAGTCTAATCACCCAGTTTTCTTGCAAAAATCTCAACTCTTCCCCGCCCAAGTTCTTCTCTTGGGCTATCGGATTTCGCGACAGGGGTTGTGTGTTCAATCGAGGACGAATAGAGCATCTCATATTATTGGGGGTTCCAGTTTTCGCTTCCCACATGCCCAAGCGTGAGCGGCCATCAACAGATAGCCCGGACTCTCGACCAGATTGCTCTCTCTTGGTTTGTTCTACATCCTCAATTACTCCAAATACTCAGCTGGGAACAACACTCCGGCCTCAGTCTATGATGCCCGTCGTTGACCTCAATATTTACTTCTACGACGAGCGCGAGATCGACAGCCTCAGGGCCTTATATGGGACAGCTGTGGGGATGGGGATATGGAGGAGAAGGGCAGCTTGGTCTGGGCTCACGGATGCATATGGTGTCCTCCCCTCATCCTATACCTTGTATCAAGTCCTCTTCTTATGGCCTTGTATCAAGTCCTCTTCTTATGGGATCATGAATTTTCATTTTACAGATTTTAAATGCATCATTGAAGGTTTTAGCAAGTCAACACCTTTCTCTATACTAATACAAATCATTAGTAGTAGGTCGTGTATTAGCAGTTTCCCTTCTTGTTCTAAGCTTTCATCAATGATTGTAGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.38

Weight (kDa)

9.33

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21480 AT1G21480
fragaria_vesca	FvH4_2g14790
malus_domestica	MD05G1012600.v1.1 MD10G1012500.v1.1
prunus_persica	Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1
pyrus_communis	pycom05g00740 pycom05g00750 pycom10g00820
rosa_chinensis	RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351
rosa_laevigata	RLG00000013308 RLG00000029731
rosa_multiflora	Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100
rosa_wichuraiana	Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AccII	CGCG	2 cut(s)	201, 447
AciI	CCGC	3 cut(s)	108, 167, 292
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	622
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	220, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AluBI	AGCT	4 cut(s)	376, 482, 515, 745
AluI	AGCT	4 cut(s)	376, 482, 515, 745
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	4 cut(s)	293, 392, 465, 587
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	31, 39, 124
AxyI	CCTNAGG	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	304, 484
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcnI	CCSGG	1 cut(s)	311
BfaI	CTAG	1 cut(s)	769
BisI	GCNGC	2 cut(s)	293, 513
BlsI	GCNGC	2 cut(s)	294, 514
Bme1390I	CCNGG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	4 cut(s)	247, 396, 523, 657
BmuI	ACTGGG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	4 cut(s)	50, 123, 136, 260
Bse21I	CCTNAGG	1 cut(s)	461
BseGI	GGATG	4 cut(s)	350, 495, 538, 554
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	3 cut(s)	386, 410, 475
BseNI	ACTGG	4 cut(s)	50, 123, 136, 260
BseRI	GAGGAG	2 cut(s)	34, 517
BseXI	GCAGC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	201, 447
BshFI	GGCC	4 cut(s)	295, 394, 467, 589
BsiSI	CCGG	3 cut(s)	11, 311, 391
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	4 cut(s)	295, 394, 467, 589
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	450, 615
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	3 cut(s)	108, 167, 292
BspANI	GGCC	4 cut(s)	295, 394, 467, 589
BspCNI	CTCAG	3 cut(s)	385, 409, 474
BspFNI	CGCG	2 cut(s)	201, 447
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	50, 123, 136, 260
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	2 cut(s)	450, 615
BssNI	GRCGYC	1 cut(s)	14
Bst6I	CTCTTC	3 cut(s)	166, 584, 610
BstACI	GRCGYC	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	372, 396, 461, 741
BstF5I	GGATG	4 cut(s)	350, 495, 538, 554
BstFNI	CGCG	2 cut(s)	201, 447
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	2 cut(s)	453, 618
BstMBI	GATC	2 cut(s)	450, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	201, 447
BstV1I	GCAGC	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	461
BsuRI	GGCC	4 cut(s)	295, 394, 467, 589
BtsCI	GGATG	4 cut(s)	350, 495, 538, 554
BtuMI	TCGCGA	1 cut(s)	201
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	3 cut(s)	28, 277, 619
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	4 cut(s)	372, 396, 461, 741
DpnI	GATC	2 cut(s)	452, 617
DpnII	GATC	2 cut(s)	450, 615
DraI	TTTAAA	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	3 cut(s)	166, 584, 610
EarI	CTCTTC	3 cut(s)	166, 584, 610
Eco24I	GRGCYC	1 cut(s)	528
Eco81I	CCTNAGG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	465
EcoT22I	ATGCAT	2 cut(s)	538, 650
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	3 cut(s)	31, 280, 622
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 499, 531
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	27, 276, 618
FauI	CCCGC	2 cut(s)	115, 174
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	293, 513
FokI	GGATG	4 cut(s)	337, 502, 541, 545
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	293, 513
FspBI	CTAG	1 cut(s)	769
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	2 cut(s)	293, 513
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	295, 394, 467, 589
HapII	CCGG	3 cut(s)	11, 311, 391
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	31, 280, 622
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	2 cut(s)	418, 672
HindII	GTYRAC	2 cut(s)	418, 672
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	11, 311, 391
HphI	GGTGA	3 cut(s)	31, 39, 124
Hpy166II	GTNNAC	3 cut(s)	418, 672, 766
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	200, 318, 619
Hpy8I	GTNNAC	3 cut(s)	418, 672, 766
Hpy99I	CGWCG	3 cut(s)	19, 416, 443
HpyAV	CCTTC	4 cut(s)	99, 501, 650, 741
HpyCH4V	TGCA	4 cut(s)	38, 147, 536, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	4 cut(s)	372, 396, 461, 741
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	31, 280, 622
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	450, 615
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	4 cut(s)	247, 396, 523, 657
MaeI	CTAG	1 cut(s)	769
MalI	GATC	2 cut(s)	452, 617
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	2 cut(s)	450, 615
MboII	GAAGA	6 cut(s)	108, 111, 153, 169, 571, 597
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	2 cut(s)	357, 622
MlyI	GAGTC	1 cut(s)	308
Mph1103I	ATGCAT	2 cut(s)	538, 650
MseI	TTAA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	376, 482
MspI	CCGG	3 cut(s)	11, 311, 391
MspR9I	CCNGG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	201, 447
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	311
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	450, 615
NlaIII	CATG	3 cut(s)	31, 280, 622
NlaIV	GGNNCC	1 cut(s)	258
NruI	TCGCGA	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	538, 650
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 444
PkrI	GCNGC	2 cut(s)	294, 514
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	465
PvuII	CAGCTG	2 cut(s)	376, 482
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	2 cut(s)	293, 513
Sau3AI	GATC	2 cut(s)	450, 615
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	4 cut(s)	247, 396, 523, 657
Sse9I	AATT	2 cut(s)	357, 622
SsiI	CCGC	3 cut(s)	108, 167, 292
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	769
StyD4I	CCNGG	1 cut(s)	309
TaqI	TCGA	3 cut(s)	223, 319, 453
TasI	AATT	2 cut(s)	357, 622
TauI	GCSGC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	617, 635, 738
TspGWI	ACGGA	1 cut(s)	545
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	1 cut(s)	769
Zsp2I	ATGCAT	2 cut(s)	538, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.