AT1G21480

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002953
Physical Location & Seq
Reverse (-)
7518946 .. 7521552
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21480.1

Sequence Viewer

Length: 1389 bp
ATGGCGAGCTTAACTAGTAATAAGCCTAGAAATTTTGGTGCGTATAGTCACTACGCTACTCCCTGCACTCGCACGCACCAGATTGGAGCTCTTTTTCTCGTCGTCTCTACCTTCTTCGTCACTAGGCTTTTCGATCAGTGGTTCTCGGAATCCAATTCCGTTACTCCGGTGATTGATCTCCGTCGTACTTCTTCTTCTTACGGAATCAAAACTGATAACGGTATTATACGGTGGCCGGAGCGAGGTTATGGGTCTCACCTCTCGCTGAAGATCTACGTTTATGATGAGAATGAGATCGACGGTCTTAAAGAGCTGTTGTACGGTAGGGATGGTAGTGTTAAGACCACCGCATGCTTGAAAGGTCAATGGGGATCTCAGGTTAAAATTCACAAGTTGCTTTTGGAGTCCAAATTTAGGACGATTAAGAAAGATGAAGCGGATTTGTTCTTTGTGCCAGCTTATGTTAAATGTGTGAGAATGTTGGGAGGTCTTAATGACAAGGAGATCAATCAGACCTATGTCAAGGTTTTGAGTCAAATGCCGTATTTCCGAAGATCTGGTGGTCGTGATCATATATTTGTTTTTCCGAGTGGTGCTGGAGCTCACTTGTTTAGATCCTGGTCAACATTTATCAACCGCTCTATTATCCTCACTCCCGAGGCTGACCGGACTGACAAGAAAGACACAACTGCCTTTAATTCATGGAAAGATATAATCATACCAGGAAACGTCGATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGCCTCTGTCAAAGAGGAAGTATTTAGCAAATTATTTAGGTCGTGCACAAGGGAAGGCTGGTCGACTTAAATTGATTGACCTATCAAAGCAATTTCCAGATAAGCTAGAATGTCCAGATTTGAAGTTTAGCGGAACTGAAAAGTTTGGAAGGACAACATATTTTGAACATCTGAGGAATGCCAAGTTCTGCCTCGCTCCTCGTGGGGAATCATCATGGACACTTCGCTTTTATGAATCATTCTTTGTGGAATGTGTCCCGGTTCTTTTATCTGACCACGCCGAGCTGCCTTTCCAGAATGTTATCGACTATGCCCAAGTATCGATCAAATGGCCATCAACTCGAATAGGCTCAGAGTTTCTTGATTACTTAGCTTCAATATCAGATAGAGACATAGAAGGAATGATAGCCCGAGGTCGGAAGATTAGATGTTTGTTTGTGTACGGTCCAGATTCCGCACCCTGCAGTGCGGTTAAAGGGATTCTATGGGAGCTTCAACGCAAAGTTAGACATTTCCAGCAATCGACTGAGACGTTTTGGCTGCACAATGGCAGTTTTGTGAATAGAGAACTGGTCCAGTTCAGTAGCTGGAGACCTCCTATGCCTCTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin NAM

Protein Analysis

462

Amino Acids

52.83

Weight (kDa)

9.38

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 88 - 374 1.2e-39 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 838
AciI CCGC 6 cut(s) 348, 437, 637, 906, 1230, 1244
AclWI GGATC 2 cut(s) 379, 609
AcoI YGGCCR 2 cut(s) 233, 1106
AcsI RAATTY 3 cut(s) 31, 384, 410
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 3 cut(s) 187, 320, 1217
AfiI CCNNNNNNNGG 3 cut(s) 242, 414, 1191
AgsI TTSAA 5 cut(s) 358, 898, 941, 1152, 1271
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 2 cut(s) 617, 721
Alw21I GWGCWC 3 cut(s) 91, 604, 823
Alw26I GTCTC 5 cut(s) 109, 258, 1158, 1298, 1360
Alw44I GTGCAC 1 cut(s) 819
AlwI GGATC 2 cut(s) 379, 609
AlwNI CAGNNNCTG 1 cut(s) 1362
Ama87I CYCGRG 2 cut(s) 656, 1185
AoxI GGCC 2 cut(s) 233, 1106
ApaLI GTGCAC 1 cut(s) 819
ApeKI GCWGC 2 cut(s) 1060, 1315
ApoI RAATTY 3 cut(s) 31, 384, 410
AspS9I GGNCC 2 cut(s) 1220, 1348
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 2 cut(s) 181, 248
AvaI CYCGRG 2 cut(s) 656, 1185
AvaII GGWCC 2 cut(s) 1220, 1348
BaeGI GKGCMC 1 cut(s) 823
BalI TGGCCA 1 cut(s) 1108
BanII GRGCYC 2 cut(s) 91, 604
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BauI CACGAG 1 cut(s) 975
Bbv12I GWGCWC 3 cut(s) 91, 604, 823
BbvI GCAGC 2 cut(s) 1047, 1302
BccI CCATC 2 cut(s) 323, 1117
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 2 cut(s) 619, 723
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 5 cut(s) 109, 258, 1158, 1298, 1360
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 4 cut(s) 15, 27, 123, 881
BfmI CTRYAG 1 cut(s) 1237
BglII AGATCT 2 cut(s) 270, 554
BisI GCNGC 2 cut(s) 1061, 1316
BlsI GCNGC 2 cut(s) 1062, 1317
Bme1390I CCNGG 3 cut(s) 619, 723, 1034
Bme18I GGWCC 2 cut(s) 1220, 1348
BmeT110I CYCGRG 2 cut(s) 656, 1185
BmgT120I GGNCC 2 cut(s) 1220, 1348
BmrFI CCNGG 3 cut(s) 619, 723, 1034
BmsI GCATC 1 cut(s) 727
BoxI GACNNNNGTC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 618, 1384
BpuMI CCSGG 1 cut(s) 1034
Bsa29I ATCGAT 1 cut(s) 1097
BsaI GGTCTC 2 cut(s) 258, 1360
BsaJI CCNNGG 2 cut(s) 657, 1186
BsaWI WCCGGW 2 cut(s) 166, 666
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 414, 1191
Bse1I ACTGG 2 cut(s) 1350, 1351
BseBI CCWGG 2 cut(s) 619, 723
BseCI ATCGAT 1 cut(s) 1097
BseDI CCNNGG 2 cut(s) 657, 1186
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 242, 414, 1191
BseMII CTCAG 4 cut(s) 389, 938, 1140, 1293
BseNI ACTGG 2 cut(s) 1350, 1351
BseRI GAGGAG 1 cut(s) 963
BseSI GKGCMC 1 cut(s) 823
BseXI GCAGC 2 cut(s) 1047, 1302
BsgI GTGCAG 2 cut(s) 49, 1301
BshFI GGCC 2 cut(s) 235, 1108
BshVI ATCGAT 1 cut(s) 1097
BsiHKAI GWGCWC 3 cut(s) 91, 604, 823
BsiHKCI CYCGRG 2 cut(s) 656, 1185
BsiSI CCGG 4 cut(s) 167, 236, 667, 1034
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 3 cut(s) 242, 414, 1191
BsmAI GTCTC 5 cut(s) 109, 258, 1158, 1298, 1360
BsmBI CGTCTC 2 cut(s) 109, 1298
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 2 cut(s) 235, 1108
Bso31I GGTCTC 2 cut(s) 258, 1360
BsoBI CYCGRG 2 cut(s) 656, 1185
Bsp1286I GDGCHC 3 cut(s) 91, 604, 823
BspACI CCGC 6 cut(s) 348, 437, 637, 906, 1230, 1244
BspANI GGCC 2 cut(s) 235, 1108
BspCNI CTCAG 4 cut(s) 388, 939, 1139, 1294
BspDI ATCGAT 1 cut(s) 1097
BspMAI CTGCAG 1 cut(s) 1241
BspPI GGATC 2 cut(s) 379, 609
BspTNI GGTCTC 2 cut(s) 258, 1360
BsrBI CCGCTC 1 cut(s) 639
BsrI ACTGG 2 cut(s) 1350, 1351
BssECI CCNNGG 2 cut(s) 657, 1186
BssSI CACGAG 1 cut(s) 975
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 619, 723
Bst4CI ACNGT 5 cut(s) 221, 231, 302, 323, 1220
BstC8I GCNNGC 4 cut(s) 7, 74, 352, 456
BstDEI CTNAG 5 cut(s) 375, 947, 1126, 1144, 1302
BstF5I GGATG 1 cut(s) 334
BstMAI GTCTC 5 cut(s) 109, 258, 1158, 1298, 1360
BstNI CCWGG 2 cut(s) 619, 723
BstNSI RCATGY 1 cut(s) 354
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 617, 721, 1032
BstSFI CTRYAG 1 cut(s) 1237
BstSLI GKGCMC 1 cut(s) 823
BstV1I GCAGC 2 cut(s) 1047, 1302
BstX2I RGATCY 4 cut(s) 270, 371, 554, 614
BstYI RGATCY 4 cut(s) 270, 371, 554, 614
Bsu15I ATCGAT 1 cut(s) 1097
BsuRI GGCC 2 cut(s) 235, 1108
BsuTUI ATCGAT 1 cut(s) 1097
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 1246
BtsIMutI CAGTG 2 cut(s) 143, 1246
Cac8I GCNNGC 4 cut(s) 7, 74, 352, 456
CaiI CAGNNNCTG 1 cut(s) 1362
Cfr13I GGNCC 2 cut(s) 1220, 1348
ClaI ATCGAT 1 cut(s) 1097
Csp6I GTAC 3 cut(s) 186, 319, 1216
CviAII CATG 3 cut(s) 351, 702, 990
CviQI GTAC 3 cut(s) 186, 319, 1216
DdeI CTNAG 5 cut(s) 375, 947, 1126, 1144, 1302
EaeI YGGCCR 2 cut(s) 233, 1106
Ecl136II GAGCTC 2 cut(s) 89, 602
Eco24I GRGCYC 2 cut(s) 91, 604
Eco31I GGTCTC 2 cut(s) 258, 1360
Eco47I GGWCC 2 cut(s) 1220, 1348
Eco53kI GAGCTC 2 cut(s) 89, 602
Eco57I CTGAAG 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 656, 1185
EcoICRI GAGCTC 2 cut(s) 89, 602
EcoRII CCWGG 2 cut(s) 617, 721
EcoT38I GRGCYC 2 cut(s) 91, 604
Esp3I CGTCTC 2 cut(s) 109, 1298
FaeI CATG 3 cut(s) 354, 705, 993
FaqI GGGAC 1 cut(s) 1016
FatI CATG 3 cut(s) 350, 701, 989
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 2 cut(s) 1061, 1316
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 2 cut(s) 91, 604
Fsp4HI GCNGC 2 cut(s) 1061, 1316
FspBI CTAG 4 cut(s) 15, 27, 123, 881
GluI GCNGC 2 cut(s) 1061, 1316
GsuI CTGGAG 2 cut(s) 618, 1384
HaeIII GGCC 2 cut(s) 235, 1108
HapII CCGG 4 cut(s) 167, 236, 667, 1034
Hin1II CATG 3 cut(s) 354, 705, 993
HincII GTYRAC 2 cut(s) 624, 839
HindII GTYRAC 2 cut(s) 624, 839
HinfI GANTC 8 cut(s) 149, 204, 404, 532, 983, 1010, 1226, 1255
HpaII CCGG 4 cut(s) 167, 236, 667, 1034
HphI GGTGA 2 cut(s) 181, 248
Hpy166II GTNNAC 4 cut(s) 624, 821, 839, 1216
Hpy188I TCNGA 9 cut(s) 148, 513, 551, 588, 948, 1048, 1129, 1159, 1194
Hpy188III TCNNGA 7 cut(s) 566, 656, 872, 890, 1069, 1136, 1223
Hpy8I GTNNAC 4 cut(s) 624, 821, 839, 1216
Hpy99I CGWCG 4 cut(s) 104, 186, 302, 734
HpyAV CCTTC 4 cut(s) 121, 823, 918, 1166
HpyCH4III ACNGT 5 cut(s) 221, 231, 302, 323, 1220
HpyCH4IV ACGT 3 cut(s) 276, 729, 1307
HpyCH4V TGCA 4 cut(s) 66, 821, 1239, 1318
HpyF3I CTNAG 5 cut(s) 375, 947, 1126, 1144, 1302
HpySE526I ACGT 3 cut(s) 276, 729, 1307
Hsp92II CATG 3 cut(s) 354, 705, 993
Ksp22I TGATCA 1 cut(s) 568
LmnI GCTCC 5 cut(s) 86, 238, 599, 976, 1264
Lsp1109I GCAGC 2 cut(s) 1047, 1302
LweI GCATC 1 cut(s) 727
MaeI CTAG 4 cut(s) 15, 27, 123, 881
MaeII ACGT 3 cut(s) 276, 729, 1307
MaeIII GTNAC 3 cut(s) 47, 118, 160
MbiI CCGCTC 1 cut(s) 639
MboII GAAGA 6 cut(s) 106, 183, 186, 280, 564, 1207
MflI RGATCY 4 cut(s) 270, 371, 554, 614
MhlI GDGCHC 3 cut(s) 91, 604, 823
MlsI TGGCCA 1 cut(s) 1108
MluCI AATT 8 cut(s) 31, 154, 384, 410, 697, 805, 845, 866
MluNI TGGCCA 1 cut(s) 1108
MlyI GAGTC 2 cut(s) 413, 541
MmeI TCCRAC 1 cut(s) 1172
Mox20I TGGCCA 1 cut(s) 1108
MscI TGGCCA 1 cut(s) 1108
Msp20I TGGCCA 1 cut(s) 1108
MspI CCGG 4 cut(s) 167, 236, 667, 1034
MspR9I CCNGG 3 cut(s) 619, 723, 1034
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 619, 723
NciI CCSGG 1 cut(s) 1034
NlaIII CATG 3 cut(s) 354, 705, 993
NmeAIII GCCGAG 1 cut(s) 1081
NmuCI GTSAC 2 cut(s) 47, 118
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 1304
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 6 cut(s) 149, 204, 983, 1010, 1226, 1255
PkrI GCNGC 2 cut(s) 1062, 1317
PleI GAGTC 2 cut(s) 412, 540
PpsI GAGTC 2 cut(s) 412, 540
PshAI GACNNNNGTC 1 cut(s) 518
Psp124BI GAGCTC 2 cut(s) 91, 604
Psp6I CCWGG 2 cut(s) 617, 721
PspGI CCWGG 2 cut(s) 617, 721
PspPI GGNCC 2 cut(s) 1220, 1348
PstI CTGCAG 1 cut(s) 1241
PstNI CAGNNNCTG 1 cut(s) 1362
PsuI RGATCY 4 cut(s) 270, 371, 554, 614
RsaI GTAC 3 cut(s) 187, 320, 1217
RsaNI GTAC 3 cut(s) 186, 319, 1216
SacI GAGCTC 2 cut(s) 91, 604
SalI GTCGAC 1 cut(s) 837
SatI GCNGC 2 cut(s) 1061, 1316
Sau96I GGNCC 2 cut(s) 1220, 1348
SchI GAGTC 2 cut(s) 413, 541
ScrFI CCNGG 3 cut(s) 619, 723, 1034
SduI GDGCHC 3 cut(s) 91, 604, 823
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 1 cut(s) 1237
SinI GGWCC 2 cut(s) 1220, 1348
SpeI ACTAGT 1 cut(s) 14
SphI GCATGC 1 cut(s) 354
Sse9I AATT 8 cut(s) 31, 154, 384, 410, 697, 805, 845, 866
SsiI CCGC 6 cut(s) 348, 437, 637, 906, 1230, 1244
SspMI CTAG 4 cut(s) 15, 27, 123, 881
SstI GAGCTC 2 cut(s) 91, 604
StyD4I CCNGG 3 cut(s) 617, 721, 1032
TaaI ACNGT 5 cut(s) 221, 231, 302, 323, 1220
TaiI ACGT 3 cut(s) 279, 732, 1310
TaqI TCGA 8 cut(s) 132, 297, 732, 838, 1080, 1097, 1117, 1298
TasI AATT 8 cut(s) 31, 154, 384, 410, 697, 805, 845, 866
TfiI GAWTC 6 cut(s) 149, 204, 983, 1010, 1226, 1255
TscAI CASTG 2 cut(s) 143, 1246
TseFI GTSAC 2 cut(s) 47, 118
TseI GCWGC 2 cut(s) 1060, 1315
Tsp45I GTSAC 2 cut(s) 47, 118
TspDTI ATGAA 3 cut(s) 447, 690, 1023
TspGWI ACGGA 3 cut(s) 148, 170, 216
TspRI CASTG 2 cut(s) 143, 1246
VneI GTGCAC 1 cut(s) 819
VpaK11BI GGWCC 2 cut(s) 1220, 1348
XapI RAATTY 3 cut(s) 31, 384, 410
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 4 cut(s) 15, 27, 123, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.