Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001567.1

Orthogroup ID

OG0002953

Physical Location & Seq

Genomic Coordinates Reverse (-)

92922 .. 96067

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001567.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgtccggcagggatggcgccattgactccacctcttgcttgaaaggccagtggggcactcaggtgaaaatacacaggctactgcaagaatcgagattccgaacgaggaagaaagaggaagcagacctgttttttgtgccggcgtatgcaaaatgtgttcgaatgatgggtggtcttaatgataaagagatcaaccagacatatgtgaaggtgttgagtcaaatgccgtatttcaggcgatctggtggtcgtgatcatatttttgtatttccaagtggagctggtgctcatttatttaggtcgtgggcaaaattcatcaatcgttccattattcttacccccgagggtgatcggactgataagaaagatacaagtgcctttgatacgtggaaagatatcatcattcctgggaatgttgatgatgggatgactacaaatggtgccaccctggtccgccctttgccactatcgaagcggaagtatcttgctaactatttaggtcgtgcacaaggaaaggctggccgccttaagttgatagagctttctaagaaatttccagataagttggaatctcctgagttgaagttcagtggccctgataaattgggaaagatagattattttgaacacctgcgcaacgccaagttctgccttgctccacgtggggagtcatcttggactcttcgtttttacgagtctttctttgtggagtgcgtcccagtgatattatcggatgaagtagaacttcctttccagaatgttgttgattacacccagatatcgattaaatggccgtcaactcgaataggtcctgagcttttgcagtacctagagtcaatatcagatgaaatcatagagggaatgataagccgtggtagacaagtaagatgtttatgggcctatgcttcagaatcagcttcatgttctgcaatgcatgcaattctttgggaacttcagagaaaagtcaggttgtttcaccaatcaactgaaacattctggctgcacgacggatctattgttaatagagaccgggtcaagttttctgattggaggcctccaatgcccttgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin NAM

Protein Analysis

357

Amino Acids

40.97

Weight (kDa)

9.31

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21480 AT1G21480
fragaria_vesca	FvH4_2g14790
malus_domestica	MD05G1012600.v1.1 MD10G1012500.v1.1
prunus_persica	Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1
pyrus_communis	pycom05g00740 pycom05g00750 pycom10g00820
rosa_chinensis	RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351
rosa_laevigata	RLG00000013308 RLG00000029731
rosa_multiflora	Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100
rosa_wichuraiana	Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	639
Acc16I	TGCGCA	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	639
AccB1I	GGYRCC	2 cut(s)	17, 440
AccI	GTMKAC	1 cut(s)	877
AciI	CCGC	3 cut(s)	454, 475, 523
AclWI	GGATC	1 cut(s)	1018
AcoI	YGGCCR	2 cut(s)	520, 791
AcsI	RAATTY	2 cut(s)	311, 551
AcuI	CTGAAG	2 cut(s)	891, 938
AcvI	CACGTG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	827
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	43, 583, 626
AjnI	CCWGG	2 cut(s)	406, 447
AleI	CACNNNNGTG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	4 cut(s)	281, 541, 817, 917
AluI	AGCT	4 cut(s)	281, 541, 817, 917
Alw21I	GWGCWC	2 cut(s)	289, 508
Alw26I	GTCTC	1 cut(s)	1020
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	1018
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	6 cut(s)	46, 520, 592, 791, 897, 1052
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	1000
ApoI	RAATTY	2 cut(s)	311, 551
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	2 cut(s)	20, 636
AspS9I	GGNCC	4 cut(s)	451, 593, 809, 897
AsuC2I	CCSGG	1 cut(s)	1031
AsuHPI	GGTGA	3 cut(s)	76, 359, 968
AsuII	TTCGAA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	451, 809
BaeGI	GKGCMC	2 cut(s)	59, 508
BanI	GGYRCC	2 cut(s)	17, 440
BbrPI	CACGTG	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	289, 508
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	3 cut(s)	8, 160, 416
BceAI	ACGGC	3 cut(s)	211, 778, 855
BciT130I	CCWGG	2 cut(s)	408, 449
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	1031
BcoDI	GTCTC	1 cut(s)	1020
BfaI	CTAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	639
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	523, 1001
BlsI	GCNGC	2 cut(s)	524, 1002
Bme1390I	CCNGG	3 cut(s)	408, 449, 1031
Bme18I	GGWCC	2 cut(s)	451, 809
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	4 cut(s)	451, 593, 809, 897
BmiI	GGNNCC	2 cut(s)	19, 442
BmrFI	CCNGG	3 cut(s)	408, 449, 1031
BmrI	ACTGGG	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	1031
Bsa29I	ATCGAT	1 cut(s)	782
BsaAI	YACGTR	2 cut(s)	387, 662
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	1020
BsaJI	CCNNGG	4 cut(s)	342, 407, 447, 871
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	49, 719
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	408, 449
BseCI	ATCGAT	1 cut(s)	782
BseDI	CCNNGG	4 cut(s)	342, 407, 447, 871
BseGI	GGATG	3 cut(s)	19, 432, 739
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	3 cut(s)	74, 567, 804
BseNI	ACTGG	2 cut(s)	49, 719
BseSI	GKGCMC	2 cut(s)	59, 508
BseXI	GCAGC	1 cut(s)	987
BsgI	GTGCAG	1 cut(s)	986
BshFI	GGCC	6 cut(s)	48, 522, 594, 793, 899, 1054
BshNI	GGYRCC	2 cut(s)	17, 440
BshVI	ATCGAT	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	289, 508
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	6, 140, 1030
BslFI	GGGAC	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	1020
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	6 cut(s)	48, 522, 594, 793, 899, 1054
Bso31I	GGTCTC	1 cut(s)	1020
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	59, 289, 508
Bsp143I	GATC	5 cut(s)	189, 239, 253, 349, 1010
BspACI	CCGC	3 cut(s)	454, 475, 523
BspANI	GGCC	6 cut(s)	48, 522, 594, 793, 899, 1054
BspCNI	CTCAG	3 cut(s)	73, 568, 805
BspDI	ATCGAT	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	19, 442
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	1018
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	2 cut(s)	17, 440
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	1020
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	49, 719
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	4 cut(s)	342, 407, 447, 871
BssMI	GATC	5 cut(s)	189, 239, 253, 349, 1010
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	408, 449
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstBAI	YACGTR	2 cut(s)	387, 662
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	141, 520, 936
BstDEI	CTNAG	4 cut(s)	60, 546, 576, 813
BstDSI	CCRYGG	1 cut(s)	871
BstF5I	GGATG	3 cut(s)	19, 432, 739
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 636
BstKTI	GATC	5 cut(s)	192, 242, 256, 352, 1013
BstMAI	GTCTC	1 cut(s)	1020
BstMBI	GATC	5 cut(s)	189, 239, 253, 349, 1010
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 45, 54, 935, 1060
BstNI	CCWGG	2 cut(s)	408, 449
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	3 cut(s)	406, 447, 1029
BstSLI	GKGCMC	2 cut(s)	59, 508
BstV1I	GCAGC	1 cut(s)	987
BstX2I	RGATCY	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	1010
Bsu15I	ATCGAT	1 cut(s)	782
BsuRI	GGCC	6 cut(s)	48, 522, 594, 793, 899, 1054
BsuTUI	ATCGAT	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	871
BtsCI	GGATG	3 cut(s)	19, 432, 739
BtsIMutI	CAGTG	3 cut(s)	56, 595, 726
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	3 cut(s)	141, 520, 936
CfoI	GCGC	2 cut(s)	20, 636
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	4 cut(s)	451, 593, 809, 897
ClaI	ATCGAT	1 cut(s)	782
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	2 cut(s)	921, 935
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	4 cut(s)	60, 546, 576, 813
DinI	GGCGCC	1 cut(s)	19
DpnI	GATC	5 cut(s)	191, 241, 255, 351, 1012
DpnII	GATC	5 cut(s)	189, 239, 253, 349, 1010
EaeI	YGGCCR	2 cut(s)	520, 791
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	1054
Eco31I	GGTCTC	1 cut(s)	1020
Eco32I	GATATC	2 cut(s)	397, 780
Eco47I	GGWCC	2 cut(s)	451, 809
Eco57I	CTGAAG	2 cut(s)	891, 938
Eco72I	CACGTG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRII	CCWGG	2 cut(s)	406, 447
EcoRV	GATATC	2 cut(s)	397, 780
EcoT22I	ATGCAT	1 cut(s)	936
EgeI	GGCGCC	1 cut(s)	19
EheI	GGCGCC	1 cut(s)	19
FaeI	CATG	2 cut(s)	924, 938
FaiI	YATR	9 cut(s)	147, 202, 204, 258, 854, 895, 903, 922, 936
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	2 cut(s)	920, 934
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	877
Fnu4HI	GCNGC	2 cut(s)	523, 1001
FokI	GGATG	3 cut(s)	26, 439, 746
Fsp4HI	GCNGC	2 cut(s)	523, 1001
FspBI	CTAG	1 cut(s)	830
FspI	TGCGCA	1 cut(s)	635
GlaI	GCGC	2 cut(s)	19, 635
GluI	GCNGC	2 cut(s)	523, 1001
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	6 cut(s)	48, 522, 594, 793, 899, 1054
HapII	CCGG	3 cut(s)	6, 140, 1030
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	2 cut(s)	20, 636
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	924, 938
Hin6I	GCGC	2 cut(s)	18, 634
HinP1I	GCGC	2 cut(s)	18, 634
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HpaII	CCGG	3 cut(s)	6, 140, 1030
HphI	GGTGA	3 cut(s)	76, 359, 968
Hpy166II	GTNNAC	3 cut(s)	506, 798, 878
Hpy188I	TCNGA	7 cut(s)	101, 354, 733, 844, 910, 957, 1045
Hpy188III	TCNNGA	6 cut(s)	93, 251, 557, 575, 754, 812
Hpy8I	GTNNAC	3 cut(s)	506, 798, 878
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	386, 661
HpyCH4V	TGCA	8 cut(s)	85, 149, 506, 823, 929, 934, 938, 1003
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 45, 54, 935, 1060
HpyF3I	CTNAG	4 cut(s)	60, 546, 576, 813
HpySE526I	ACGT	2 cut(s)	386, 661
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	924, 938
HspAI	GCGC	2 cut(s)	18, 634
KasI	GGCGCC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	189, 239, 253, 349, 1010
LmnI	GCTCC	2 cut(s)	278, 661
Lsp1109I	GCAGC	1 cut(s)	987
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	2 cut(s)	386, 661
MalI	GATC	5 cut(s)	191, 241, 255, 351, 1012
MboI	GATC	5 cut(s)	189, 239, 253, 349, 1010
MboII	GAAGA	2 cut(s)	121, 674
MflI	RGATCY	1 cut(s)	1010
MhlI	GDGCHC	3 cut(s)	59, 289, 508
MluCI	AATT	4 cut(s)	311, 551, 602, 939
Mly113I	GGCGCC	1 cut(s)	18
MlyI	GAGTC	6 cut(s)	20, 226, 673, 677, 704, 842
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	7 cut(s)	43, 99, 109, 337, 850, 1044, 1065
Mph1103I	ATGCAT	1 cut(s)	936
MroNI	GCCGGC	1 cut(s)	139
MseI	TTAA	4 cut(s)	177, 528, 786, 1020
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	3 cut(s)	6, 140, 1030
MspR9I	CCNGG	3 cut(s)	408, 449, 1031
MvaI	CCWGG	2 cut(s)	408, 449
MwoI	GCNNNNNNNGC	5 cut(s)	15, 45, 54, 935, 1060
NaeI	GCCGGC	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	1031
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	5 cut(s)	189, 239, 253, 349, 1010
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	924, 938
NlaIV	GGNNCC	2 cut(s)	19, 442
NsbI	TGCGCA	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	936
NspI	RCATGY	1 cut(s)	938
NspV	TTCGAA	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	938
PaqCI	CACCTGC	1 cut(s)	639
PceI	AGGCCT	1 cut(s)	1054
PdiI	GCCGGC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	89, 96, 569, 911
PflFI	GACNNNGTC	1 cut(s)	1031
PkrI	GCNGC	2 cut(s)	524, 1002
PleI	GAGTC	6 cut(s)	20, 225, 673, 676, 703, 841
PluTI	GGCGCC	1 cut(s)	21
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	6 cut(s)	20, 225, 673, 676, 703, 841
Ppu21I	YACGTR	2 cut(s)	387, 662
PpuMI	RGGWCCY	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	406, 447
PspCI	CACGTG	1 cut(s)	662
PspGI	CCWGG	2 cut(s)	406, 447
PspN4I	GGNNCC	2 cut(s)	19, 442
PspPI	GGNCC	4 cut(s)	451, 593, 809, 897
PspPPI	RGGWCCY	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	1010
PsyI	GACNNNGTC	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	177, 528, 786, 1020
SatI	GCNGC	2 cut(s)	523, 1001
Sau3AI	GATC	5 cut(s)	189, 239, 253, 349, 1010
Sau96I	GGNCC	4 cut(s)	451, 593, 809, 897
SchI	GAGTC	6 cut(s)	20, 226, 673, 677, 704, 842
ScrFI	CCNGG	3 cut(s)	408, 449, 1031
SduI	GDGCHC	3 cut(s)	59, 289, 508
SfoI	GGCGCC	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	2 cut(s)	451, 809
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	938
Sse9I	AATT	4 cut(s)	311, 551, 602, 939
SseBI	AGGCCT	1 cut(s)	1054
SsiI	CCGC	3 cut(s)	454, 475, 523
SspDI	GGCGCC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	830
StuI	AGGCCT	1 cut(s)	1054
StyD4I	CCNGG	3 cut(s)	406, 447, 1029
TaiI	ACGT	2 cut(s)	389, 664
TaqI	TCGA	5 cut(s)	92, 160, 470, 782, 802
TasI	AATT	4 cut(s)	311, 551, 602, 939
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	4 cut(s)	89, 96, 569, 911
Tru1I	TTAA	4 cut(s)	177, 528, 786, 1020
Tru9I	TTAA	4 cut(s)	177, 528, 786, 1020
TscAI	CASTG	3 cut(s)	56, 595, 726
TseI	GCWGC	1 cut(s)	1000
TspDTI	ATGAA	4 cut(s)	304, 750, 861, 909
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	3 cut(s)	56, 595, 726
Tth111I	GACNNNGTC	1 cut(s)	1031
Vha464I	CTTAAG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	451, 809
XapI	RAATTY	2 cut(s)	311, 551
XceI	RCATGY	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	877
XspI	CTAG	1 cut(s)	830
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.