Rmu_sc0014605.1_g000001

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014605.1
OG0002953
Physical Location & Seq
Forward (+)
152 .. 1344
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014605.1_g000001.1.cds

Sequence Viewer

Length: 690 bp
atgctgggaagcgtaaacagcaaagcccgaccatacagcgcgcagcaccaccaacagcctctctgcacccgcaagcaccagatcggagccctcctcttggtagccaccaccgtcttcttcaccaagctcctcgaccgctcctcactcccctgctccttcacccccgccgatcccatcaccgcttcacggagctccgtccacgtcaccaatggcggagacctcttgtggccccaccgcgggtacggccccgtggtcgacctcaagatttacgtctacgacgagtgcgagatcgacggcctcaaggccttgatgtccggcagggatggcaccattgactccacctcttgcttgaaaggccagtggggcactcaggtgaaaatacacaggctactgcaagaatcgagattccgaacgaggaagaaagaggaagcagaccttttttttgtgccggcgtatgcaaaatgtgttcgaatgatgggtggtcttaatgataaagagatcaaccagacatatgtgaaggtgttgagtcaaatgccgtatttcaggcgatctggtggtcgtgatcatatttttgtatttccaagtggagctggtgctcatttatttatgtcgtgggcaaaattcatcaatcgttccattattcttacccccgaggtatttacttattccagcatgtattttctgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin NAM

Protein Analysis

229

Amino Acids

25.85

Weight (kDa)

9.49

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 138
AccI GTMKAC 2 cut(s) 255, 273
AccII CGCG 2 cut(s) 41, 237
AciI CCGC 7 cut(s) 70, 136, 165, 180, 213, 235, 237
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 620
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 97, 186, 236, 237
AgsI TTSAA 1 cut(s) 352
AjiI CACGTC 1 cut(s) 202
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 3 cut(s) 127, 192, 590
AluI AGCT 3 cut(s) 127, 192, 590
Alw21I GWGCWC 2 cut(s) 194, 598
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 5 cut(s) 227, 244, 295, 303, 355
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspLEI GCGC 2 cut(s) 41, 43
AspS9I GGNCC 2 cut(s) 228, 245
AsuHPI GGTGA 5 cut(s) 112, 151, 169, 196, 385
AsuII TTCGAA 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 91, 194
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 194, 598
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 182, 317, 469
BceAI ACGGC 3 cut(s) 259, 310, 520
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 650
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 228, 245
BmiI GGNNCC 4 cut(s) 88, 230, 247, 328
BpiI GAAGAC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bpu14I TTCGAA 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 245, 284
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 235, 249, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 186, 236, 237
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 235, 249, 651
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 4 cut(s) 97, 186, 236, 237
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 358
BsePI GCGCGC 1 cut(s) 39
BseRI GAGGAG 3 cut(s) 83, 119, 130
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 41, 237
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 229, 246, 297, 305, 357
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 194, 598
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 2 cut(s) 315, 449
BslI CCNNNNNNNGG 4 cut(s) 97, 186, 236, 237
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 5 cut(s) 229, 246, 297, 305, 357
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 650
Bsp119I TTCGAA 1 cut(s) 469
Bsp1286I GDGCHC 4 cut(s) 91, 194, 368, 598
Bsp143I GATC 6 cut(s) 81, 169, 288, 498, 548, 562
BspACI CCGC 7 cut(s) 70, 136, 165, 180, 213, 235, 237
BspANI GGCC 5 cut(s) 229, 246, 297, 305, 357
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 2 cut(s) 41, 237
BspLI GGNNCC 4 cut(s) 88, 230, 247, 328
BspPI GGATC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 235, 249, 651
BssHII GCGCGC 1 cut(s) 39
BssMI GATC 6 cut(s) 81, 169, 288, 498, 548, 562
Bst4CI ACNGT 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 41, 74, 450
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 2 cut(s) 235, 249
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 41, 237
BstHHI GCGC 2 cut(s) 41, 43
BstKTI GATC 6 cut(s) 84, 172, 291, 501, 551, 565
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 6 cut(s) 81, 169, 288, 498, 548, 562
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 5 cut(s) 18, 243, 324, 354, 363
BstNSI RCATGY 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 2 cut(s) 41, 237
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 5 cut(s) 229, 246, 297, 305, 357
BtgI CCRYGG 2 cut(s) 235, 249
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 41, 74, 450
CfoI GCGC 2 cut(s) 41, 43
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 228, 245
Cfr42I CCGCGG 1 cut(s) 238
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 673
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 369
DpnI GATC 6 cut(s) 83, 171, 290, 500, 550, 564
DpnII GATC 6 cut(s) 81, 169, 288, 498, 548, 562
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 91, 194
Eco31I GGTCTC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 91, 194
FaeI CATG 1 cut(s) 676
FaiI YATR 7 cut(s) 34, 456, 511, 513, 567, 608, 674
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 1 cut(s) 672
FauI CCCGC 3 cut(s) 77, 172, 230
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 2 cut(s) 255, 273
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 2 cut(s) 91, 194
Fsp4HI GCNGC 1 cut(s) 44
GlaI GCGC 2 cut(s) 40, 42
GluI GCNGC 1 cut(s) 44
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 5 cut(s) 229, 246, 297, 305, 357
HapII CCGG 2 cut(s) 315, 449
HhaI GCGC 2 cut(s) 41, 43
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 2 cut(s) 39, 41
HinP1I GCGC 2 cut(s) 39, 41
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 4 cut(s) 335, 398, 405, 526
HpaII CCGG 2 cut(s) 315, 449
HphI GGTGA 5 cut(s) 112, 151, 169, 196, 385
Hpy166II GTNNAC 4 cut(s) 16, 199, 256, 274
Hpy188I TCNGA 2 cut(s) 86, 410
Hpy188III TCNNGA 3 cut(s) 262, 402, 560
Hpy8I GTNNAC 4 cut(s) 16, 199, 256, 274
Hpy99I CGWCG 2 cut(s) 281, 296
HpyAV CCTTC 2 cut(s) 166, 511
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 201, 270
HpyCH4V TGCA 3 cut(s) 66, 394, 458
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 243, 324, 354, 363
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 201, 270
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 2 cut(s) 39, 41
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Ksp22I TGATCA 1 cut(s) 562
KspI CCGCGG 1 cut(s) 238
Kzo9I GATC 6 cut(s) 81, 169, 288, 498, 548, 562
LmnI GCTCC 7 cut(s) 86, 132, 143, 158, 189, 197, 587
Lsp1109I GCAGC 1 cut(s) 55
MaeII ACGT 2 cut(s) 201, 270
MaeIII GTNAC 1 cut(s) 202
MalI GATC 6 cut(s) 83, 171, 290, 500, 550, 564
MbiI CCGCTC 1 cut(s) 138
MboI GATC 6 cut(s) 81, 169, 288, 498, 548, 562
MboII GAAGA 3 cut(s) 106, 109, 430
MhlI GDGCHC 4 cut(s) 91, 194, 368, 598
MluCI AATT 1 cut(s) 620
MlyI GAGTC 2 cut(s) 329, 535
MroNI GCCGGC 1 cut(s) 448
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 2 cut(s) 315, 449
MvnI CGCG 2 cut(s) 41, 237
MwoI GCNNNNNNNGC 5 cut(s) 18, 243, 324, 354, 363
NaeI GCCGGC 1 cut(s) 450
NdeI CATATG 1 cut(s) 511
NdeII GATC 6 cut(s) 81, 169, 288, 498, 548, 562
NgoMIV GCCGGC 1 cut(s) 448
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 4 cut(s) 88, 230, 247, 328
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 676
NspV TTCGAA 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 371
PauI GCGCGC 1 cut(s) 39
PceI AGGCCT 1 cut(s) 305
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 282
PdiI GCCGGC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 398, 405
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 2 cut(s) 329, 534
PpsI GAGTC 2 cut(s) 329, 534
Psp124BI GAGCTC 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 4 cut(s) 88, 230, 247, 328
PspPI GGNCC 2 cut(s) 228, 245
PteI GCGCGC 1 cut(s) 39
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 194
SacII CCGCGG 1 cut(s) 238
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 6 cut(s) 81, 169, 288, 498, 548, 562
Sau96I GGNCC 2 cut(s) 228, 245
SchI GAGTC 2 cut(s) 329, 535
SduI GDGCHC 4 cut(s) 91, 194, 368, 598
Sfr303I CCGCGG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 469
SgrBI CCGCGG 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 260, 299
SmoI CTYRAG 2 cut(s) 260, 299
Sse9I AATT 1 cut(s) 620
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 7 cut(s) 70, 136, 165, 180, 213, 235, 237
SstI GAGCTC 1 cut(s) 194
StuI AGGCCT 1 cut(s) 305
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 204, 273
TaqI TCGA 5 cut(s) 132, 255, 291, 401, 469
TasI AATT 1 cut(s) 620
TfiI GAWTC 2 cut(s) 398, 405
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 613
TspGWI ACGGA 2 cut(s) 184, 202
TspRI CASTG 1 cut(s) 365
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 255, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.