Exostosin family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21480 AT1G21480 |
| fragaria_vesca | FvH4_2g14790 |
| malus_domestica | MD05G1012600.v1.1 MD10G1012500.v1.1 |
| prunus_persica | Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 Prupe.8G017900_v2.0.a1 |
| pyrus_communis | pycom05g00740 pycom05g00750 pycom10g00820 |
| rosa_chinensis | RchiOBHm_Chr1g0331511 RchiOBHm_Chr6g0277351 |
| rosa_laevigata | RLG00000013308 RLG00000029731 |
| rosa_multiflora | Rmu_sc0001567.1_g000013 Rmu_sc0003791.1_g000005 Rmu_sc0014349.1_g000002 Rmu_sc0014605.1_g000001 Rmu_sc0040563.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00133530 Rroxscaffold_4G00319080 Rroxscaffold_7G00191410 |
| rosa_rugosa | Rorug01G0093300 |
| rosa_samantha | Rh1AG118500 Rh1BG089500 Rh1CG113300 Rh1DG122600 Rh2CG224900 Rh6AG178500 Rh6AG218400 Rh6BG222100 Rh6CG224900 Rh6DG215100 |
| rosa_wichuraiana | Rw0G022410 Rw1G009490 Rw6G015250 Rw6G019130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 172 |
| Acc16I | TGCGCA | 1 cut(s) | 249 |
| Acc36I | ACCTGC | 1 cut(s) | 24 |
| AccB1I | GGYRCC | 2 cut(s) | 533, 956 |
| AccBSI | CCGCTC | 1 cut(s) | 345 |
| AccI | GTMKAC | 3 cut(s) | 166, 480, 1249 |
| AccII | CGCG | 3 cut(s) | 135, 444, 492 |
| AclWI | GGATC | 2 cut(s) | 371, 1390 |
| AcoI | YGGCCR | 2 cut(s) | 1036, 1163 |
| AcsI | RAATTY | 4 cut(s) | 116, 143, 827, 1067 |
| AcuI | CTGAAG | 2 cut(s) | 1263, 1310 |
| AcyI | GRCGYC | 2 cut(s) | 169, 534 |
| AfaI | GTAC | 2 cut(s) | 449, 1199 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 304, 393, 443, 444 |
| AflII | CTTAAG | 1 cut(s) | 1043 |
| AgsI | TTSAA | 1 cut(s) | 559 |
| AjiI | CACGTC | 1 cut(s) | 409 |
| AjnI | CCWGG | 2 cut(s) | 922, 963 |
| AleI | CACNNNNGTG | 1 cut(s) | 578 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1107, 1139 |
| AluBI | AGCT | 6 cut(s) | 334, 399, 797, 1057, 1189, 1289 |
| AluI | AGCT | 6 cut(s) | 334, 399, 797, 1057, 1189, 1289 |
| Alw21I | GWGCWC | 3 cut(s) | 401, 805, 1024 |
| Alw26I | GTCTC | 2 cut(s) | 417, 1392 |
| Alw44I | GTGCAC | 1 cut(s) | 1020 |
| AlwI | GGATC | 2 cut(s) | 371, 1390 |
| Ama87I | CYCGRG | 1 cut(s) | 857 |
| AoxI | GGCC | 9 cut(s) | 434, 451, 502, 510, 562, 1036, 1163, 1269, 1424 |
| ApaLI | GTGCAC | 1 cut(s) | 1020 |
| ApeKI | GCWGC | 1 cut(s) | 1372 |
| ApoI | RAATTY | 4 cut(s) | 116, 143, 827, 1067 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 632, 664 |
| AspLEI | GCGC | 4 cut(s) | 33, 250, 492, 536 |
| AspS9I | GGNCC | 6 cut(s) | 36, 435, 452, 967, 1181, 1269 |
| AsuC2I | CCSGG | 1 cut(s) | 1403 |
| AsuHPI | GGTGA | 8 cut(s) | 189, 319, 358, 376, 403, 592, 875, 1340 |
| AsuII | TTCGAA | 1 cut(s) | 676 |
| AvaI | CYCGRG | 1 cut(s) | 857 |
| AvaII | GGWCC | 3 cut(s) | 36, 967, 1181 |
| BaeGI | GKGCMC | 2 cut(s) | 575, 1024 |
| BanI | GGYRCC | 2 cut(s) | 533, 956 |
| BanII | GRGCYC | 2 cut(s) | 298, 401 |
| BbsI | GAAGAC | 1 cut(s) | 313 |
| Bbv12I | GWGCWC | 3 cut(s) | 401, 805, 1024 |
| BbvI | GCAGC | 1 cut(s) | 1359 |
| BccI | CCATC | 4 cut(s) | 196, 524, 676, 932 |
| BceAI | ACGGC | 5 cut(s) | 466, 517, 727, 1150, 1227 |
| BciT130I | CCWGG | 2 cut(s) | 924, 965 |
| BclI | TGATCA | 1 cut(s) | 769 |
| BcnI | CCSGG | 1 cut(s) | 1403 |
| BcoDI | GTCTC | 2 cut(s) | 417, 1392 |
| BfaI | CTAG | 2 cut(s) | 150, 1202 |
| BfoI | RGCGCY | 1 cut(s) | 537 |
| BfrI | CTTAAG | 1 cut(s) | 1043 |
| BfuAI | ACCTGC | 1 cut(s) | 24 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 570 |
| BisI | GCNGC | 2 cut(s) | 1039, 1373 |
| BlsI | GCNGC | 2 cut(s) | 1040, 1374 |
| Bme1390I | CCNGG | 3 cut(s) | 924, 965, 1403 |
| Bme18I | GGWCC | 3 cut(s) | 36, 967, 1181 |
| BmeT110I | CYCGRG | 1 cut(s) | 857 |
| BmgBI | CACGTC | 1 cut(s) | 409 |
| BmgT120I | GGNCC | 6 cut(s) | 36, 435, 452, 967, 1181, 1269 |
| BmiI | GGNNCC | 6 cut(s) | 38, 295, 437, 454, 535, 958 |
| BmrFI | CCNGG | 3 cut(s) | 924, 965, 1403 |
| BmrI | ACTGGG | 1 cut(s) | 1085 |
| BmsI | GCATC | 1 cut(s) | 139 |
| BmuI | ACTGGG | 1 cut(s) | 1085 |
| BpiI | GAAGAC | 1 cut(s) | 313 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 285, 317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1185 |
| Bpu14I | TTCGAA | 1 cut(s) | 676 |
| BpuEI | CTTGAG | 2 cut(s) | 452, 491 |
| BpuMI | CCSGG | 1 cut(s) | 1403 |
| Bsa29I | ATCGAT | 1 cut(s) | 1154 |
| BsaAI | YACGTR | 1 cut(s) | 903 |
| BsaHI | GRCGYC | 2 cut(s) | 169, 534 |
| BsaI | GGTCTC | 2 cut(s) | 417, 1392 |
| BsaJI | CCNNGG | 5 cut(s) | 442, 858, 923, 963, 1243 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 304, 393, 443, 444 |
| Bse118I | RCCGGY | 2 cut(s) | 199, 655 |
| Bse1I | ACTGG | 2 cut(s) | 565, 1091 |
| Bse3DI | GCAATG | 1 cut(s) | 1308 |
| BseBI | CCWGG | 2 cut(s) | 924, 965 |
| BseCI | ATCGAT | 1 cut(s) | 1154 |
| BseDI | CCNNGG | 5 cut(s) | 442, 858, 923, 963, 1243 |
| BseGI | GGATG | 4 cut(s) | 172, 535, 948, 1111 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 304, 393, 443, 444 |
| BseMI | GCAATG | 1 cut(s) | 1308 |
| BseMII | CTCAG | 2 cut(s) | 590, 1176 |
| BseNI | ACTGG | 2 cut(s) | 565, 1091 |
| BseRI | GAGGAG | 3 cut(s) | 290, 326, 337 |
| BseSI | GKGCMC | 2 cut(s) | 575, 1024 |
| BseXI | GCAGC | 1 cut(s) | 1359 |
| BseYI | CCCAGC | 2 cut(s) | 126, 211 |
| BsgI | GTGCAG | 3 cut(s) | 78, 256, 1358 |
| Bsh1236I | CGCG | 3 cut(s) | 135, 444, 492 |
| Bsh1285I | CGRYCG | 1 cut(s) | 343 |
| BshFI | GGCC | 9 cut(s) | 436, 453, 504, 512, 564, 1038, 1165, 1271, 1426 |
| BshNI | GGYRCC | 2 cut(s) | 533, 956 |
| BshVI | ATCGAT | 1 cut(s) | 1154 |
| BsiEI | CGRYCG | 1 cut(s) | 343 |
| BsiHKAI | GWGCWC | 3 cut(s) | 401, 805, 1024 |
| BsiHKCI | CYCGRG | 1 cut(s) | 857 |
| BsiSI | CCGG | 4 cut(s) | 200, 522, 656, 1402 |
| BslFI | GGGAC | 2 cut(s) | 22, 1073 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 304, 393, 443, 444 |
| BsmAI | GTCTC | 2 cut(s) | 417, 1392 |
| BsmFI | GGGAC | 2 cut(s) | 22, 1073 |
| BsnI | GGCC | 9 cut(s) | 436, 453, 504, 512, 564, 1038, 1165, 1271, 1426 |
| Bso31I | GGTCTC | 2 cut(s) | 417, 1392 |
| BsoBI | CYCGRG | 1 cut(s) | 857 |
| Bsp119I | TTCGAA | 1 cut(s) | 676 |
| Bsp1286I | GDGCHC | 5 cut(s) | 298, 401, 575, 805, 1024 |
| Bsp143I | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| BspANI | GGCC | 9 cut(s) | 436, 453, 504, 512, 564, 1038, 1165, 1271, 1426 |
| BspCNI | CTCAG | 2 cut(s) | 589, 1177 |
| BspDI | ATCGAT | 1 cut(s) | 1154 |
| BspFNI | CGCG | 3 cut(s) | 135, 444, 492 |
| BspLI | GGNNCC | 6 cut(s) | 38, 295, 437, 454, 535, 958 |
| BspMI | ACCTGC | 1 cut(s) | 24 |
| BspPI | GGATC | 2 cut(s) | 371, 1390 |
| BspT104I | TTCGAA | 1 cut(s) | 676 |
| BspT107I | GGYRCC | 2 cut(s) | 533, 956 |
| BspTI | CTTAAG | 1 cut(s) | 1043 |
| BspTNI | GGTCTC | 2 cut(s) | 417, 1392 |
| BsrBI | CCGCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 1 cut(s) | 1308 |
| BsrFI | RCCGGY | 2 cut(s) | 199, 655 |
| BsrI | ACTGG | 2 cut(s) | 565, 1091 |
| BssAI | RCCGGY | 2 cut(s) | 199, 655 |
| BssECI | CCNNGG | 5 cut(s) | 442, 858, 923, 963, 1243 |
| BssMI | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| BssNI | GRCGYC | 2 cut(s) | 169, 534 |
| Bst2UI | CCWGG | 2 cut(s) | 924, 965 |
| Bst4CI | ACNGT | 2 cut(s) | 245, 319 |
| BstACI | GRCGYC | 2 cut(s) | 169, 534 |
| BstAFI | CTTAAG | 1 cut(s) | 1043 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 79, 1307 |
| BstBAI | YACGTR | 1 cut(s) | 903 |
| BstBI | TTCGAA | 1 cut(s) | 676 |
| BstC8I | GCNNGC | 4 cut(s) | 281, 657, 1036, 1308 |
| BstDEI | CTNAG | 3 cut(s) | 576, 1062, 1185 |
| BstDSI | CCRYGG | 2 cut(s) | 442, 1243 |
| BstF5I | GGATG | 4 cut(s) | 172, 535, 948, 1111 |
| BstFNI | CGCG | 3 cut(s) | 135, 444, 492 |
| BstH2I | RGCGCY | 1 cut(s) | 537 |
| BstHHI | GCGC | 4 cut(s) | 33, 250, 492, 536 |
| BstKTI | GATC | 9 cut(s) | 97, 291, 379, 498, 708, 758, 772, 868, 1385 |
| BstMAI | GTCTC | 2 cut(s) | 417, 1392 |
| BstMBI | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| BstMCI | CGRYCG | 1 cut(s) | 343 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 65, 79, 225, 450, 531, 561, 570, 1307, 1432 |
| BstNI | CCWGG | 2 cut(s) | 924, 965 |
| BstNSI | RCATGY | 1 cut(s) | 1310 |
| BstSCI | CCNGG | 3 cut(s) | 922, 963, 1401 |
| BstSLI | GKGCMC | 2 cut(s) | 575, 1024 |
| BstUI | CGCG | 3 cut(s) | 135, 444, 492 |
| BstV1I | GCAGC | 1 cut(s) | 1359 |
| BstV2I | GAAGAC | 1 cut(s) | 313 |
| BstX2I | RGATCY | 1 cut(s) | 1382 |
| BstYI | RGATCY | 1 cut(s) | 1382 |
| Bsu15I | ATCGAT | 1 cut(s) | 1154 |
| BsuRI | GGCC | 9 cut(s) | 436, 453, 504, 512, 564, 1038, 1165, 1271, 1426 |
| BsuTUI | ATCGAT | 1 cut(s) | 1154 |
| BtgI | CCRYGG | 2 cut(s) | 442, 1243 |
| BtgZI | GCGATG | 1 cut(s) | 116 |
| BtrI | CACGTC | 1 cut(s) | 409 |
| BtsCI | GGATG | 4 cut(s) | 172, 535, 948, 1111 |
| BtsI | GCAGTG | 2 cut(s) | 44, 66 |
| BtsIMutI | CAGTG | 5 cut(s) | 44, 66, 250, 572, 1098 |
| BveI | ACCTGC | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 4 cut(s) | 281, 657, 1036, 1308 |
| CfoI | GCGC | 4 cut(s) | 33, 250, 492, 536 |
| Cfr10I | RCCGGY | 2 cut(s) | 199, 655 |
| Cfr13I | GGNCC | 6 cut(s) | 36, 435, 452, 967, 1181, 1269 |
| Cfr42I | CCGCGG | 1 cut(s) | 445 |
| ClaI | ATCGAT | 1 cut(s) | 1154 |
| CseI | GACGC | 1 cut(s) | 1075 |
| Csp6I | GTAC | 2 cut(s) | 448, 1198 |
| CviAII | CATG | 3 cut(s) | 208, 1293, 1307 |
| CviQI | GTAC | 2 cut(s) | 448, 1198 |
| DdeI | CTNAG | 3 cut(s) | 576, 1062, 1185 |
| DinI | GGCGCC | 1 cut(s) | 535 |
| DpnI | GATC | 9 cut(s) | 96, 290, 378, 497, 707, 757, 771, 867, 1384 |
| DpnII | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| EaeI | YGGCCR | 2 cut(s) | 1036, 1163 |
| EciI | GGCGGA | 2 cut(s) | 435, 959 |
| Ecl136II | GAGCTC | 1 cut(s) | 399 |
| Eco147I | AGGCCT | 2 cut(s) | 512, 1426 |
| Eco24I | GRGCYC | 2 cut(s) | 298, 401 |
| Eco31I | GGTCTC | 2 cut(s) | 417, 1392 |
| Eco32I | GATATC | 2 cut(s) | 913, 1152 |
| Eco47I | GGWCC | 3 cut(s) | 36, 967, 1181 |
| Eco53kI | GAGCTC | 1 cut(s) | 399 |
| Eco57I | CTGAAG | 2 cut(s) | 1263, 1310 |
| Eco88I | CYCGRG | 1 cut(s) | 857 |
| EcoICRI | GAGCTC | 1 cut(s) | 399 |
| EcoO109I | RGGNCCY | 2 cut(s) | 36, 1181 |
| EcoRII | CCWGG | 2 cut(s) | 922, 963 |
| EcoRV | GATATC | 2 cut(s) | 913, 1152 |
| EcoT22I | ATGCAT | 1 cut(s) | 1308 |
| EcoT38I | GRGCYC | 2 cut(s) | 298, 401 |
| EgeI | GGCGCC | 1 cut(s) | 535 |
| EheI | GGCGCC | 1 cut(s) | 535 |
| FaeI | CATG | 3 cut(s) | 211, 1296, 1310 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1101, 1133 |
| FaqI | GGGAC | 2 cut(s) | 22, 1073 |
| FatI | CATG | 3 cut(s) | 207, 1292, 1306 |
| FauI | CCCGC | 5 cut(s) | 42, 128, 284, 379, 437 |
| FauNDI | CATATG | 1 cut(s) | 718 |
| FbaI | TGATCA | 1 cut(s) | 769 |
| FblI | GTMKAC | 3 cut(s) | 166, 480, 1249 |
| Fnu4HI | GCNGC | 2 cut(s) | 1039, 1373 |
| FokI | GGATG | 4 cut(s) | 159, 542, 955, 1118 |
| FriOI | GRGCYC | 2 cut(s) | 298, 401 |
| Fsp4HI | GCNGC | 2 cut(s) | 1039, 1373 |
| FspBI | CTAG | 2 cut(s) | 150, 1202 |
| FspI | TGCGCA | 1 cut(s) | 249 |
| GlaI | GCGC | 4 cut(s) | 32, 249, 491, 535 |
| GluI | GCNGC | 2 cut(s) | 1039, 1373 |
| GsaI | CCCAGC | 2 cut(s) | 130, 215 |
| HaeII | RGCGCY | 1 cut(s) | 537 |
| HaeIII | GGCC | 9 cut(s) | 436, 453, 504, 512, 564, 1038, 1165, 1271, 1426 |
| HapII | CCGG | 4 cut(s) | 200, 522, 656, 1402 |
| HgaI | GACGC | 1 cut(s) | 1075 |
| HhaI | GCGC | 4 cut(s) | 33, 250, 492, 536 |
| Hin1I | GRCGYC | 2 cut(s) | 169, 534 |
| Hin1II | CATG | 3 cut(s) | 211, 1296, 1310 |
| Hin6I | GCGC | 4 cut(s) | 31, 248, 490, 534 |
| HinP1I | GCGC | 4 cut(s) | 31, 248, 490, 534 |
| HincII | GTYRAC | 2 cut(s) | 167, 1170 |
| HindII | GTYRAC | 2 cut(s) | 167, 1170 |
| HinfI | GANTC | 8 cut(s) | 11, 184, 542, 605, 612, 733, 1205, 1283 |
| HpaII | CCGG | 4 cut(s) | 200, 522, 656, 1402 |
| HphI | GGTGA | 8 cut(s) | 189, 319, 358, 376, 403, 592, 875, 1340 |
| Hpy166II | GTNNAC | 7 cut(s) | 167, 223, 406, 481, 1022, 1170, 1250 |
| Hpy188I | TCNGA | 9 cut(s) | 183, 293, 617, 870, 1105, 1216, 1282, 1329, 1417 |
| Hpy188III | TCNNGA | 7 cut(s) | 98, 469, 609, 767, 1073, 1126, 1184 |
| Hpy8I | GTNNAC | 7 cut(s) | 167, 223, 406, 481, 1022, 1170, 1250 |
| Hpy99I | CGWCG | 3 cut(s) | 171, 503, 1382 |
| HpyAV | CCTTC | 2 cut(s) | 373, 718 |
| HpyCH4III | ACNGT | 2 cut(s) | 245, 319 |
| HpyCH4IV | ACGT | 4 cut(s) | 169, 408, 477, 902 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 65, 79, 225, 450, 531, 561, 570, 1307, 1432 |
| HpyF3I | CTNAG | 3 cut(s) | 576, 1062, 1185 |
| HpySE526I | ACGT | 4 cut(s) | 169, 408, 477, 902 |
| Hsp92I | GRCGYC | 2 cut(s) | 169, 534 |
| Hsp92II | CATG | 3 cut(s) | 211, 1296, 1310 |
| HspAI | GCGC | 4 cut(s) | 31, 248, 490, 534 |
| KasI | GGCGCC | 1 cut(s) | 533 |
| KroI | GCCGGC | 1 cut(s) | 655 |
| KroNI | GCCGGC | 1 cut(s) | 657 |
| Ksp22I | TGATCA | 1 cut(s) | 769 |
| KspI | CCGCGG | 1 cut(s) | 445 |
| Kzo9I | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| LmnI | GCTCC | 6 cut(s) | 293, 339, 350, 365, 396, 794 |
| Lsp1109I | GCAGC | 1 cut(s) | 1359 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeI | CTAG | 2 cut(s) | 150, 1202 |
| MaeII | ACGT | 4 cut(s) | 169, 408, 477, 902 |
| MaeIII | GTNAC | 2 cut(s) | 382, 409 |
| MalI | GATC | 9 cut(s) | 96, 290, 378, 497, 707, 757, 771, 867, 1384 |
| MbiI | CCGCTC | 1 cut(s) | 345 |
| MboI | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| MboII | GAAGA | 4 cut(s) | 183, 313, 316, 637 |
| MflI | RGATCY | 1 cut(s) | 1382 |
| MhlI | GDGCHC | 5 cut(s) | 298, 401, 575, 805, 1024 |
| MluCI | AATT | 5 cut(s) | 116, 143, 827, 1067, 1311 |
| Mly113I | GGCGCC | 1 cut(s) | 534 |
| MlyI | GAGTC | 3 cut(s) | 536, 742, 1214 |
| Mph1103I | ATGCAT | 1 cut(s) | 1308 |
| MroNI | GCCGGC | 1 cut(s) | 655 |
| MseI | TTAA | 6 cut(s) | 84, 120, 693, 1044, 1158, 1392 |
| MslI | CAYNNNNRTG | 1 cut(s) | 578 |
| MspA1I | CMGCKG | 1 cut(s) | 444 |
| MspCI | CTTAAG | 1 cut(s) | 1043 |
| MspI | CCGG | 4 cut(s) | 200, 522, 656, 1402 |
| MspR9I | CCNGG | 3 cut(s) | 924, 965, 1403 |
| MvaI | CCWGG | 2 cut(s) | 924, 965 |
| MvnI | CGCG | 3 cut(s) | 135, 444, 492 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 65, 79, 225, 450, 531, 561, 570, 1307, 1432 |
| NaeI | GCCGGC | 1 cut(s) | 657 |
| NarI | GGCGCC | 1 cut(s) | 534 |
| NciI | CCSGG | 1 cut(s) | 1403 |
| NdeI | CATATG | 1 cut(s) | 718 |
| NdeII | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| NgoMIV | GCCGGC | 1 cut(s) | 655 |
| NlaIII | CATG | 3 cut(s) | 211, 1296, 1310 |
| NlaIV | GGNNCC | 6 cut(s) | 38, 295, 437, 454, 535, 958 |
| NmuCI | GTSAC | 2 cut(s) | 382, 409 |
| NsbI | TGCGCA | 1 cut(s) | 249 |
| NsiI | ATGCAT | 1 cut(s) | 1308 |
| NspI | RCATGY | 1 cut(s) | 1310 |
| NspV | TTCGAA | 1 cut(s) | 676 |
| OliI | CACNNNNGTG | 1 cut(s) | 578 |
| PaeI | GCATGC | 1 cut(s) | 1310 |
| PceI | AGGCCT | 2 cut(s) | 512, 1426 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 489 |
| PdiI | GCCGGC | 1 cut(s) | 657 |
| PfeI | GAWTC | 5 cut(s) | 11, 184, 605, 612, 1283 |
| PflFI | GACNNNGTC | 1 cut(s) | 1403 |
| PkrI | GCNGC | 2 cut(s) | 1040, 1374 |
| PleI | GAGTC | 3 cut(s) | 536, 741, 1213 |
| PluTI | GGCGCC | 1 cut(s) | 537 |
| PpsI | GAGTC | 3 cut(s) | 536, 741, 1213 |
| Ppu21I | YACGTR | 1 cut(s) | 903 |
| PpuMI | RGGWCCY | 2 cut(s) | 36, 1181 |
| Psp124BI | GAGCTC | 1 cut(s) | 401 |
| Psp5II | RGGWCCY | 2 cut(s) | 36, 1181 |
| Psp6I | CCWGG | 2 cut(s) | 922, 963 |
| PspFI | CCCAGC | 2 cut(s) | 126, 211 |
| PspGI | CCWGG | 2 cut(s) | 922, 963 |
| PspN4I | GGNNCC | 6 cut(s) | 38, 295, 437, 454, 535, 958 |
| PspPI | GGNCC | 6 cut(s) | 36, 435, 452, 967, 1181, 1269 |
| PspPPI | RGGWCCY | 2 cut(s) | 36, 1181 |
| PsuI | RGATCY | 1 cut(s) | 1382 |
| PsyI | GACNNNGTC | 1 cut(s) | 1403 |
| RsaI | GTAC | 2 cut(s) | 449, 1199 |
| RsaNI | GTAC | 2 cut(s) | 448, 1198 |
| RseI | CAYNNNNRTG | 1 cut(s) | 578 |
| SacI | GAGCTC | 1 cut(s) | 401 |
| SacII | CCGCGG | 1 cut(s) | 445 |
| SalI | GTCGAC | 1 cut(s) | 165 |
| SaqAI | TTAA | 6 cut(s) | 84, 120, 693, 1044, 1158, 1392 |
| SatI | GCNGC | 2 cut(s) | 1039, 1373 |
| Sau3AI | GATC | 9 cut(s) | 94, 288, 376, 495, 705, 755, 769, 865, 1382 |
| Sau96I | GGNCC | 6 cut(s) | 36, 435, 452, 967, 1181, 1269 |
| SchI | GAGTC | 3 cut(s) | 536, 742, 1214 |
| ScrFI | CCNGG | 3 cut(s) | 924, 965, 1403 |
| SduI | GDGCHC | 5 cut(s) | 298, 401, 575, 805, 1024 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SfoI | GGCGCC | 1 cut(s) | 535 |
| Sfr303I | CCGCGG | 1 cut(s) | 445 |
| SfuI | TTCGAA | 1 cut(s) | 676 |
| SgrBI | CCGCGG | 1 cut(s) | 445 |
| SinI | GGWCC | 3 cut(s) | 36, 967, 1181 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 578 |
| SmlI | CTYRAG | 3 cut(s) | 467, 506, 1043 |
| SmoI | CTYRAG | 3 cut(s) | 467, 506, 1043 |
| SphI | GCATGC | 1 cut(s) | 1310 |
| Sse9I | AATT | 5 cut(s) | 116, 143, 827, 1067, 1311 |
| SseBI | AGGCCT | 2 cut(s) | 512, 1426 |
| SspDI | GGCGCC | 1 cut(s) | 533 |
| SspMI | CTAG | 2 cut(s) | 150, 1202 |
| SstI | GAGCTC | 1 cut(s) | 401 |
| StuI | AGGCCT | 2 cut(s) | 512, 1426 |
| StyD4I | CCNGG | 3 cut(s) | 922, 963, 1401 |
| TaaI | ACNGT | 2 cut(s) | 245, 319 |
| TaiI | ACGT | 4 cut(s) | 172, 411, 480, 905 |
| TaqI | TCGA | 8 cut(s) | 166, 339, 462, 498, 608, 676, 986, 1154 |
| TasI | AATT | 5 cut(s) | 116, 143, 827, 1067, 1311 |
| TauI | GCSGC | 1 cut(s) | 1041 |
| TfiI | GAWTC | 5 cut(s) | 11, 184, 605, 612, 1283 |
| Tru1I | TTAA | 6 cut(s) | 84, 120, 693, 1044, 1158, 1392 |
| Tru9I | TTAA | 6 cut(s) | 84, 120, 693, 1044, 1158, 1392 |
| TscAI | CASTG | 5 cut(s) | 51, 66, 250, 572, 1098 |
| TseFI | GTSAC | 2 cut(s) | 382, 409 |
| TseI | GCWGC | 1 cut(s) | 1372 |
| Tsp45I | GTSAC | 2 cut(s) | 382, 409 |
| TspDTI | ATGAA | 4 cut(s) | 820, 1122, 1233, 1281 |
| TspGWI | ACGGA | 2 cut(s) | 409, 1395 |
| TspRI | CASTG | 5 cut(s) | 51, 66, 250, 572, 1098 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1403 |
| Vha464I | CTTAAG | 1 cut(s) | 1043 |
| VneI | GTGCAC | 1 cut(s) | 1020 |
| VpaK11BI | GGWCC | 3 cut(s) | 36, 967, 1181 |
| XapI | RAATTY | 4 cut(s) | 116, 143, 827, 1067 |
| XceI | RCATGY | 1 cut(s) | 1310 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 413 |
| XmiI | GTMKAC | 3 cut(s) | 166, 480, 1249 |
| XspI | CTAG | 2 cut(s) | 150, 1202 |
| ZraI | GACGTC | 1 cut(s) | 170 |
| Zsp2I | ATGCAT | 1 cut(s) | 1308 |