Rroxscaffold_7G00191400

psbP domain-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014267
Physical Location & Seq
Reverse (-)
31970283 .. 31974149
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191400.1

Sequence Viewer

Length: 747 bp
ATGAGAGCAGCCTTGCTTACCAGCTGCAGCTTTGCCTGGACTTATCAGCCAAAAGCAATCCCCTCCCACAATTTGCTTGTTCAATCTTCACTCGAACATGGAGCTTGCAGCACAAAATCCGAAGCGAGTTCAAGAGAAAGCGGTTTGGTTAATGGAGAAGCTGAGAAAGTCTCTGGGATTTTGAAGAGAAGATCAGTGGTGCTGTCTGGAGCTTCTTTGGTTTCTTCTGCAGTGTTGGGTTTTCCAGGAGAGGGTTTGGCCGTGATTAAACAGGGTCCTCTAGCAGGAAGGATTCCCGGTCTGTCCGAACCAAATGAACAAGGTTGGAGGACATACCGCAGACCAGATGAGAAGTCCGGAGGGCACGGTGTTGGTTGGAGCCCTATCATCCCTTATATCTTCTCTGTTCCTCAAGATTGGGAAGAGGTTCCAGTATCAATAGCTGATCTTGGTGATCTTGATGGAGATGCAACAATTGAAAAAATTGGCCGTCCAGAGACGGTGATCAATGCATTTGGACCCGAAGTTATAGGGGAGAATGTGGAAGGCAAGGTAATGAGCATAAATGTTGTTCAAGATTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCTCTGATCACAGCAACTGCAGCAGGGAATCGCCTGTACTTGTTTAATGTAACTGGAAGTGGTCTTCAATGGAAGAGGCATTACAAAGATTTGAAGAAGATAGCAGACTCCTTTCGTGTAGTCTGA

Protein Analysis

248

Amino Acids

26.79

Weight (kDa)

6.23

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 152 - 247 3e-09 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 141, 337
AcoI YGGCCR 2 cut(s) 258, 487
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 2 cut(s) 251, 284
AgsI TTSAA 7 cut(s) 83, 132, 184, 479, 575, 689, 715
AjnI CCWGG 2 cut(s) 35, 244
AluBI AGCT 6 cut(s) 24, 30, 104, 161, 212, 443
AluI AGCT 6 cut(s) 24, 30, 104, 161, 212, 443
Alw26I GTCTC 2 cut(s) 175, 491
AlwNI CAGNNNCTG 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 258, 487
ApeKI GCWGC 5 cut(s) 8, 24, 27, 108, 641
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 275, 518
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 464, 514
AvaII GGWCC 2 cut(s) 275, 518
BaeGI GKGCMC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BbsI GAAGAC 1 cut(s) 677
BbvI GCAGC 5 cut(s) 11, 20, 39, 120, 653
BccI CCATC 1 cut(s) 455
BceAI ACGGC 2 cut(s) 245, 474
BciT130I CCWGG 2 cut(s) 37, 246
BclI TGATCA 2 cut(s) 504, 627
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 175, 491
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 3 cut(s) 25, 228, 639
BisI GCNGC 5 cut(s) 9, 25, 28, 109, 642
BlsI GCNGC 5 cut(s) 10, 26, 29, 110, 643
Bme1390I CCNGG 3 cut(s) 37, 246, 297
Bme18I GGWCC 2 cut(s) 275, 518
BmgT120I GGNCC 2 cut(s) 275, 518
BmiI GGNNCC 5 cut(s) 276, 380, 429, 520, 612
BmrFI CCNGG 3 cut(s) 37, 246, 297
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 677
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 284
Bse1I ACTGG 3 cut(s) 431, 598, 679
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 2 cut(s) 37, 246
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 251, 284
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 431, 598, 679
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 5 cut(s) 11, 20, 39, 120, 653
BshFI GGCC 2 cut(s) 260, 489
BsiSI CCGG 2 cut(s) 297, 357
BslI CCNNNNNNNGG 2 cut(s) 251, 284
BsmAI GTCTC 2 cut(s) 175, 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 260, 489
Bsp1286I GDGCHC 2 cut(s) 366, 383
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 191, 445, 454, 504, 627
BspACI CCGC 2 cut(s) 141, 337
BspANI GGCC 2 cut(s) 260, 489
BspCNI CTCAG 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 5 cut(s) 276, 380, 429, 520, 612
BspMAI CTGCAG 3 cut(s) 29, 232, 643
BsrI ACTGG 3 cut(s) 431, 598, 679
BssMI GATC 5 cut(s) 191, 445, 454, 504, 627
Bst2UI CCWGG 2 cut(s) 37, 246
Bst4CI ACNGT 2 cut(s) 368, 502
Bst6I CTCTTC 3 cut(s) 179, 417, 689
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 5 cut(s) 194, 448, 457, 507, 630
BstMAI GTCTC 2 cut(s) 175, 491
BstMBI GATC 5 cut(s) 191, 445, 454, 504, 627
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 2 cut(s) 37, 246
BstSCI CCNGG 3 cut(s) 35, 244, 295
BstSFI CTRYAG 3 cut(s) 25, 228, 639
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 5 cut(s) 11, 20, 39, 120, 653
BstV2I GAAGAC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 260, 489
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 201, 237
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 275, 518
Csp6I GTAC 1 cut(s) 658
CviAII CATG 2 cut(s) 98, 620
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 1 cut(s) 162
DpnI GATC 5 cut(s) 193, 447, 456, 506, 629
DpnII GATC 5 cut(s) 191, 445, 454, 504, 627
EaeI YGGCCR 2 cut(s) 258, 487
Eam1104I CTCTTC 3 cut(s) 179, 417, 689
EarI CTCTTC 3 cut(s) 179, 417, 689
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 2 cut(s) 275, 518
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 35, 244
EcoT22I ATGCAT 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 2 cut(s) 101, 623
FaiI YATR 8 cut(s) 99, 334, 396, 530, 563, 592, 603, 621
FatI CATG 2 cut(s) 97, 619
FbaI TGATCA 2 cut(s) 504, 627
Fnu4HI GCNGC 5 cut(s) 9, 25, 28, 109, 642
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 5 cut(s) 9, 25, 28, 109, 642
FspBI CTAG 1 cut(s) 281
GluI GCNGC 5 cut(s) 9, 25, 28, 109, 642
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 2 cut(s) 260, 489
HapII CCGG 2 cut(s) 297, 357
Hin1II CATG 2 cut(s) 101, 623
HinfI GANTC 4 cut(s) 292, 578, 649, 728
HpaII CCGG 2 cut(s) 297, 357
HphI GGTGA 2 cut(s) 464, 514
Hpy188I TCNGA 4 cut(s) 121, 307, 627, 746
Hpy188III TCNNGA 8 cut(s) 132, 207, 357, 413, 458, 494, 575, 582
HpyAV CCTTC 2 cut(s) 282, 539
HpyCH4III ACNGT 2 cut(s) 368, 502
HpyCH4V TGCA 6 cut(s) 27, 108, 230, 470, 512, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 2 cut(s) 101, 623
Kpn2I TCCGGA 1 cut(s) 356
Ksp22I TGATCA 2 cut(s) 504, 627
Kzo9I GATC 5 cut(s) 191, 445, 454, 504, 627
LmnI GCTCC 4 cut(s) 101, 209, 378, 610
Lsp1109I GCAGC 5 cut(s) 11, 20, 39, 120, 653
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 670
MalI GATC 5 cut(s) 193, 447, 456, 506, 629
MboI GATC 5 cut(s) 191, 445, 454, 504, 627
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 366, 383
MluCI AATT 3 cut(s) 70, 474, 483
MlyI GAGTC 1 cut(s) 722
MmeI TCCRAC 3 cut(s) 305, 356, 588
MnlI CCTC 9 cut(s) 73, 244, 288, 321, 353, 418, 420, 627, 690
Mph1103I ATGCAT 1 cut(s) 514
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 150, 267, 666
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 297, 357
MspR9I CCNGG 3 cut(s) 37, 246, 297
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 2 cut(s) 37, 246
MwoI GCNNNNNNNGC 1 cut(s) 641
NciI CCSGG 1 cut(s) 297
NdeII GATC 5 cut(s) 191, 445, 454, 504, 627
NlaIII CATG 2 cut(s) 101, 623
NlaIV GGNNCC 5 cut(s) 276, 380, 429, 520, 612
NsiI ATGCAT 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 292, 578, 649
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 5 cut(s) 10, 26, 29, 110, 643
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 35, 244
PspGI CCWGG 2 cut(s) 35, 244
PspN4I GGNNCC 5 cut(s) 276, 380, 429, 520, 612
PspPI GGNCC 2 cut(s) 275, 518
PspPPI RGGWCCY 1 cut(s) 275
PstI CTGCAG 3 cut(s) 29, 232, 643
PstNI CAGNNNCTG 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SaqAI TTAA 3 cut(s) 150, 267, 666
SatI GCNGC 5 cut(s) 9, 25, 28, 109, 642
Sau3AI GATC 5 cut(s) 191, 445, 454, 504, 627
Sau96I GGNCC 2 cut(s) 275, 518
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 3 cut(s) 37, 246, 297
SduI GDGCHC 2 cut(s) 366, 383
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 3 cut(s) 25, 228, 639
SinI GGWCC 2 cut(s) 275, 518
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
Sse9I AATT 3 cut(s) 70, 474, 483
SsiI CCGC 2 cut(s) 141, 337
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 3 cut(s) 35, 244, 295
TaaI ACNGT 2 cut(s) 368, 502
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 70, 474, 483
TatI WGTACW 1 cut(s) 657
TfiI GAWTC 3 cut(s) 292, 578, 649
Tru1I TTAA 3 cut(s) 150, 267, 666
Tru9I TTAA 3 cut(s) 150, 267, 666
TscAI CASTG 2 cut(s) 201, 237
TseI GCWGC 5 cut(s) 8, 24, 27, 108, 641
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 2 cut(s) 201, 237
VpaK11BI GGWCC 2 cut(s) 275, 518
XagI CCTNNNNNAGG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.