RLG00000029732

psbP domain-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014267
Physical Location & Seq
Forward (+)
47998942 .. 48000424
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029732

Sequence Viewer

Length: 1011 bp
ATGCTCAAGAAGCCGAAGCTTGAGAACCTCAAACTTCTACAACATTCTTTCACAAACACTTCTTCAGTTCTTCTTGTTTCTAAATTACTAGAAACATCTAACACAACAGCTTCTGCTCTTGAATCCCGCCACAGCAAGTCTCCTTTCTATTCTACTTCCAAAAGTGGTAAGAGGAAAATGAGAGCAGCCTTGTTTACCAGTTGCAGCTTTGCCTGGACTTATCAGCCAAAAGCAATCCCCTCCCACAATTTGCTTGTTCAATCTTCTTCACTAGAACATAGAGGTTGCAGCACAAGATCCGAAGCGAGTTCAAGAGAAAGCGGTTTGGTTATTGGAGAAGCTGAGAAAGTCTCTGGGATTTTGAAGAGAAGATCAGTGGTGCTGTCTGGAGCTTCTTTGGTTTCTTCTGCAGTGTTGGGTTTCCCAGGAGAGAGTTTGGCCGTGATAAAACAGGGTCTCCTAGCAGGAAGGATTCCCGGTCTGTCCGAACCAGATGAACAAGGTTGGAGGACATACCGCAGACCAGATGAGAAGTCTGGAGGGCACGGTGTGGGTTGGAGCCCTATCATCCCTTATGTCTTCTCTGTTCCTCAAGATTGGGAAGAGGTTCCAGTATCAATAGCTGATCTTGGTGGTACAGAGATCGACCTGAGATTTGGTAGCGTCAAGGAGGGACGCCTGTCGGTCATTGTTGCTCCTGTTCTGAGATTTGCAGATAATCTTGATGGAGATGCAACAATTGAAAAAATTGGCCGTCCAGAGACGGTGATCAATGCATTTGGACCCGAAGTTATTGGGGAGAATGTGGAAGGGAAGGTACTGAGCATAAATGTTGTTCAAGATTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCTCTGATCACAGCAACTGCAGCAGGGAATCGCCTGTACTTGTTTAATGTAATGGGAAGTGGTCTTCAATGGAAGAGGCATTACAAAGATTTGAAGAAGATAGCAGACTCCTTTCGTGTAGTCTGA

Protein Analysis

337

Amino Acids

36.66

Weight (kDa)

9.27

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 192 - 335 4.9e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 127, 321, 517
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 2 cut(s) 438, 751
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 676
AdeI CACNNNGTG 1 cut(s) 550
AfaI GTAC 3 cut(s) 637, 819, 923
AgsI TTSAA 8 cut(s) 122, 260, 312, 364, 743, 839, 953, 979
AjnI CCWGG 2 cut(s) 212, 424
AluBI AGCT 6 cut(s) 19, 110, 207, 341, 392, 623
AluI AGCT 6 cut(s) 19, 110, 207, 341, 392, 623
Alw26I GTCTC 4 cut(s) 144, 355, 461, 755
AlwI GGATC 1 cut(s) 291
AlwNI CAGNNNCTG 2 cut(s) 113, 902
AoxI GGCC 2 cut(s) 438, 751
ApeKI GCWGC 4 cut(s) 185, 204, 288, 905
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp700I GAANNNNTTC 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 782
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 778
AvaII GGWCC 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 546
BanII GRGCYC 1 cut(s) 563
BarI GAAGNNNNNNTAC 4 cut(s) 801, 833, 950, 982
BbsI GAAGAC 2 cut(s) 571, 941
BbvI GCAGC 4 cut(s) 197, 216, 300, 917
BccI CCATC 1 cut(s) 719
BceAI ACGGC 2 cut(s) 425, 738
BciT130I CCWGG 2 cut(s) 214, 426
BclI TGATCA 2 cut(s) 768, 891
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 4 cut(s) 144, 355, 461, 755
BfaI CTAG 3 cut(s) 89, 272, 461
BfmI CTRYAG 2 cut(s) 408, 903
BisI GCNGC 4 cut(s) 186, 205, 289, 906
BlsI GCNGC 4 cut(s) 187, 206, 290, 907
Bme1390I CCNGG 3 cut(s) 214, 426, 477
Bme18I GGWCC 1 cut(s) 782
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 4 cut(s) 560, 609, 784, 876
BmrFI CCNGG 3 cut(s) 214, 426, 477
BmsI GCATC 1 cut(s) 721
BoxI GACNNNNGTC 1 cut(s) 679
BpiI GAAGAC 2 cut(s) 571, 941
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 408, 558
BpuEI CTTGAG 2 cut(s) 41, 576
BpuMI CCSGG 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 676
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bse1I ACTGG 3 cut(s) 198, 611, 862
BseBI CCWGG 2 cut(s) 214, 426
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 1 cut(s) 567
BseMII CTCAG 4 cut(s) 333, 641, 695, 812
BseNI ACTGG 3 cut(s) 198, 611, 862
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 4 cut(s) 197, 216, 300, 917
BshFI GGCC 2 cut(s) 440, 753
BsiSI CCGG 1 cut(s) 477
BslFI GGGAC 1 cut(s) 687
BsmAI GTCTC 4 cut(s) 144, 355, 461, 755
BsmBI CGTCTC 1 cut(s) 755
BsmFI GGGAC 1 cut(s) 687
BsnI GGCC 2 cut(s) 440, 753
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 546, 563
Bsp143I GATC 6 cut(s) 296, 371, 625, 642, 768, 891
BspACI CCGC 3 cut(s) 127, 321, 517
BspANI GGCC 2 cut(s) 440, 753
BspCNI CTCAG 4 cut(s) 334, 642, 696, 813
BspLI GGNNCC 4 cut(s) 560, 609, 784, 876
BspMAI CTGCAG 2 cut(s) 412, 907
BspPI GGATC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 461
BsrI ACTGG 3 cut(s) 198, 611, 862
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 6 cut(s) 296, 371, 625, 642, 768, 891
BssNI GRCGYC 1 cut(s) 676
Bst2UI CCWGG 2 cut(s) 214, 426
Bst4CI ACNGT 2 cut(s) 548, 766
Bst6I CTCTTC 3 cut(s) 359, 597, 953
BstACI GRCGYC 1 cut(s) 676
BstDEI CTNAG 4 cut(s) 342, 650, 704, 821
BstF5I GGATG 1 cut(s) 567
BstKTI GATC 6 cut(s) 299, 374, 628, 645, 771, 894
BstMAI GTCTC 4 cut(s) 144, 355, 461, 755
BstMBI GATC 6 cut(s) 296, 371, 625, 642, 768, 891
BstMWI GCNNNNNNNGC 2 cut(s) 10, 905
BstNI CCWGG 2 cut(s) 214, 426
BstPAI GACNNNNGTC 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 212, 424, 475
BstSFI CTRYAG 2 cut(s) 408, 903
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 197, 216, 300, 917
BstV2I GAAGAC 2 cut(s) 571, 941
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 2 cut(s) 440, 753
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 381, 417
CaiI CAGNNNCTG 2 cut(s) 113, 902
Cfr13I GGNCC 1 cut(s) 782
CseI GACGC 2 cut(s) 652, 684
Csp6I GTAC 3 cut(s) 636, 818, 922
CviAII CATG 1 cut(s) 884
CviQI GTAC 3 cut(s) 636, 818, 922
DdeI CTNAG 4 cut(s) 342, 650, 704, 821
DpnI GATC 6 cut(s) 298, 373, 627, 644, 770, 893
DpnII GATC 6 cut(s) 296, 371, 625, 642, 768, 891
DraIII CACNNNGTG 1 cut(s) 550
EaeI YGGCCR 2 cut(s) 438, 751
Eam1104I CTCTTC 3 cut(s) 359, 597, 953
EarI CTCTTC 3 cut(s) 359, 597, 953
Eco24I GRGCYC 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 212, 424
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 755
FaeI CATG 1 cut(s) 887
FaiI YATR 7 cut(s) 279, 514, 576, 827, 856, 867, 885
FaqI GGGAC 1 cut(s) 687
FatI CATG 1 cut(s) 883
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 2 cut(s) 768, 891
Fnu4HI GCNGC 4 cut(s) 186, 205, 289, 906
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 4 cut(s) 186, 205, 289, 906
FspBI CTAG 3 cut(s) 89, 272, 461
GluI GCNGC 4 cut(s) 186, 205, 289, 906
GsuI CTGGAG 2 cut(s) 408, 558
HaeIII GGCC 2 cut(s) 440, 753
HapII CCGG 1 cut(s) 477
HgaI GACGC 2 cut(s) 652, 684
Hin1I GRCGYC 1 cut(s) 676
Hin1II CATG 1 cut(s) 887
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 5 cut(s) 122, 472, 842, 913, 992
HpaII CCGG 1 cut(s) 477
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 5 cut(s) 301, 487, 705, 891, 1010
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 462, 803, 808
HpyCH4III ACNGT 2 cut(s) 548, 766
HpyCH4V TGCA 7 cut(s) 204, 288, 410, 713, 734, 776, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 905
HpyF3I CTNAG 4 cut(s) 342, 650, 704, 821
Hsp92I GRCGYC 1 cut(s) 676
Hsp92II CATG 1 cut(s) 887
Ksp22I TGATCA 2 cut(s) 768, 891
Kzo9I GATC 6 cut(s) 296, 371, 625, 642, 768, 891
LmnI GCTCC 4 cut(s) 389, 558, 700, 874
Lsp1109I GCAGC 4 cut(s) 197, 216, 300, 917
LweI GCATC 1 cut(s) 721
MaeI CTAG 3 cut(s) 89, 272, 461
MalI GATC 6 cut(s) 298, 373, 627, 644, 770, 893
MboI GATC 6 cut(s) 296, 371, 625, 642, 768, 891
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 2 cut(s) 546, 563
MluCI AATT 4 cut(s) 83, 247, 738, 747
MlyI GAGTC 1 cut(s) 986
MmeI TCCRAC 3 cut(s) 485, 536, 852
Mph1103I ATGCAT 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 1 cut(s) 930
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 3 cut(s) 214, 426, 477
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 2 cut(s) 214, 426
MwoI GCNNNNNNNGC 2 cut(s) 10, 905
NciI CCSGG 1 cut(s) 477
NdeII GATC 6 cut(s) 296, 371, 625, 642, 768, 891
NlaIII CATG 1 cut(s) 887
NlaIV GGNNCC 4 cut(s) 560, 609, 784, 876
NsiI ATGCAT 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 122, 472, 842, 913
PkrI GCNGC 4 cut(s) 187, 206, 290, 907
PleI GAGTC 1 cut(s) 986
PpsI GAGTC 1 cut(s) 986
PshAI GACNNNNGTC 1 cut(s) 679
Psp6I CCWGG 2 cut(s) 212, 424
PspGI CCWGG 2 cut(s) 212, 424
PspN4I GGNNCC 4 cut(s) 560, 609, 784, 876
PspPI GGNCC 1 cut(s) 782
PstI CTGCAG 2 cut(s) 412, 907
PstNI CAGNNNCTG 2 cut(s) 113, 902
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 3 cut(s) 637, 819, 923
RsaNI GTAC 3 cut(s) 636, 818, 922
SaqAI TTAA 1 cut(s) 930
SatI GCNGC 4 cut(s) 186, 205, 289, 906
Sau3AI GATC 6 cut(s) 296, 371, 625, 642, 768, 891
Sau96I GGNCC 1 cut(s) 782
SchI GAGTC 1 cut(s) 986
ScrFI CCNGG 3 cut(s) 214, 426, 477
SduI GDGCHC 2 cut(s) 546, 563
SfaNI GCATC 1 cut(s) 721
SfcI CTRYAG 2 cut(s) 408, 903
SinI GGWCC 1 cut(s) 782
SmlI CTYRAG 3 cut(s) 5, 20, 591
SmoI CTYRAG 3 cut(s) 5, 20, 591
Sse9I AATT 4 cut(s) 83, 247, 738, 747
SsiI CCGC 3 cut(s) 127, 321, 517
SspMI CTAG 3 cut(s) 89, 272, 461
StyD4I CCNGG 3 cut(s) 212, 424, 475
TaaI ACNGT 2 cut(s) 548, 766
TaqI TCGA 1 cut(s) 645
TaqII GACCGA 1 cut(s) 673
TasI AATT 4 cut(s) 83, 247, 738, 747
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 4 cut(s) 122, 472, 842, 913
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TscAI CASTG 2 cut(s) 381, 417
TseI GCWGC 4 cut(s) 185, 204, 288, 905
TspDTI ATGAA 1 cut(s) 510
TspRI CASTG 2 cut(s) 381, 417
VpaK11BI GGWCC 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 3 cut(s) 89, 272, 461
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.