Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014267

Physical Location & Seq

Genomic Coordinates Reverse (-)

1712982 .. 1714561

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1012400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACAACAGCCTTGCTTACCAGTTGCAGATTCTCGCACGGTTTGGTGGTTCAGTCTTCAATGGAACGTGGAACTTGCAGGACAAAAGCTGCCTCAAATTCGACAGAAAATGGTTTGGTTGATGGAGAAGCTGATAAGTTCTCCGGGATTTTGAAGAGACGATCAGTGTTGCTGTCCGCAGGAGTTTCTTTGCTTTCTTCTCAAGTGTTGGGTTTTCCGAGAGAGGGATTGGCAGTGGTGAAACAAGGTCTTCTGGCCGGCCGGATTCCCGGTCTGTCCGAACCGGATGAACAAGGTTGGAGGACGTACCGGAGACCGGATGAGAAGTCCGGAGGGCATGGCGTTGGTTGGAGCCCTATCATCCCTTATCTCTTTTCAGTTCCTCAAGATTGGGAAGAGGTTCCAGTATCAATAGCGGATCTAGGCGGTACAGAGATCGATTTGAGATTTGGTAGCCCCAAGGAGGGACGCATTTCTGTCATTGTTGCTCCCGTTCTGAGATTTGCAGATAATCTTGATGGAGATGCCACAATTGAAAAAATTGGACGTCCAGAGACAGTAATCAACGCATTTGGACCGGAAGTTATTGGCGAAAATGTTGAAGGAAAGGTTATGAGCATAAATGTCGTACAAGACTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCTCTGATAACAGCAACTGCAGCTGGGAACCGCCTGTACTTGTTTAACGTAACTGGAAGTGGTCTTCAGTGGAAGAGGCATTACAAGGACTTGAAAAAAATAGCCGACTCCTTTCGTGTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

268

Amino Acids

29.03

Weight (kDa)

6.45

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	123 - 266	4.2e-12	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77090
fragaria_vesca	FvH4_2g14791
malus_domestica	MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica	Prupe.8G017800_v2.0.a1
pyrus_communis	pycom10g00810
rosa_chinensis	RchiOBHm_Chr6g0277361
rosa_laevigata	RLG00000013307 RLG00000029732
rosa_multiflora	Rmu_sc0000030.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191400
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana	Rw6G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	329
AciI	CCGC	4 cut(s)	177, 416, 426, 709
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	2 cut(s)	255, 259
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	4 cut(s)	308, 430, 630, 716
AfiI	CCNNNNNNNGG	4 cut(s)	224, 316, 463, 464
AgsI	TTSAA	5 cut(s)	60, 154, 536, 602, 772
AluBI	AGCT	3 cut(s)	89, 131, 701
AluI	AGCT	3 cut(s)	89, 131, 701
Alw26I	GTCTC	3 cut(s)	151, 307, 548
AlwI	GGATC	1 cut(s)	426
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	2 cut(s)	255, 259
ApeKI	GCWGC	2 cut(s)	89, 698
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	2 cut(s)	145, 270
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BbsI	GAAGAC	3 cut(s)	48, 242, 734
BbvI	GCAGC	2 cut(s)	76, 710
BccI	CCATC	2 cut(s)	116, 512
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BcnI	CCSGG	2 cut(s)	145, 270
BcoDI	GTCTC	3 cut(s)	151, 307, 548
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	696
BisI	GCNGC	2 cut(s)	90, 699
BlsI	GCNGC	2 cut(s)	91, 700
Bme1390I	CCNGG	2 cut(s)	145, 270
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	4 cut(s)	353, 402, 669, 707
BmrFI	CCNGG	2 cut(s)	145, 270
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	3 cut(s)	48, 242, 734
BpuEI	CTTGAG	2 cut(s)	186, 369
BpuMI	CCSGG	2 cut(s)	145, 270
Bsa29I	ATCGAT	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	5 cut(s)	283, 309, 316, 329, 577
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 316, 463, 464
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	4 cut(s)	21, 404, 655, 736
BseAI	TCCGGA	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	292, 325, 360
BseLI	CCNNNNNNNGG	4 cut(s)	224, 316, 463, 464
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	4 cut(s)	21, 404, 655, 736
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	76, 710
BseYI	CCCAGC	1 cut(s)	701
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	257, 261
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	9 cut(s)	144, 258, 262, 270, 284, 310, 317, 330, 578
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	4 cut(s)	224, 316, 463, 464
BsmAI	GTCTC	3 cut(s)	151, 307, 548
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	257, 261
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	161, 418, 435
BspACI	CCGC	4 cut(s)	177, 416, 426, 709
BspANI	GGCC	2 cut(s)	257, 261
BspCNI	CTCAG	1 cut(s)	489
BspDI	ATCGAT	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	329
BspLI	GGNNCC	4 cut(s)	353, 402, 669, 707
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	4 cut(s)	21, 404, 655, 736
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	161, 418, 435
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	41, 559
Bst6I	CTCTTC	3 cut(s)	149, 390, 746
BstACI	GRCGYC	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	292, 325, 360
BstKTI	GATC	3 cut(s)	164, 421, 438
BstMAI	GTCTC	3 cut(s)	151, 307, 548
BstMBI	GATC	3 cut(s)	161, 418, 435
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	143, 268
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	76, 710
BstV2I	GAAGAC	3 cut(s)	48, 242, 734
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BstZI	CGGCCG	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	257, 261
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	292, 325, 360
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	171, 240, 752
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	575
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	4 cut(s)	307, 429, 629, 715
CviAII	CATG	2 cut(s)	338, 677
CviQI	GTAC	4 cut(s)	307, 429, 629, 715
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	3 cut(s)	163, 420, 437
DpnII	GATC	3 cut(s)	161, 418, 435
EaeI	YGGCCR	2 cut(s)	255, 259
EagI	CGGCCG	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	149, 390, 746
EarI	CTCTTC	3 cut(s)	149, 390, 746
EclXI	CGGCCG	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	575
Eco52I	CGGCCG	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	2 cut(s)	341, 680
FaiI	YATR	6 cut(s)	339, 614, 620, 649, 660, 678
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	2 cut(s)	337, 676
Fnu4HI	GCNGC	2 cut(s)	90, 699
FokI	GGATG	3 cut(s)	299, 332, 347
FriOI	GRGCYC	1 cut(s)	356
FseI	GGCCGGCC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	90, 699
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	2 cut(s)	90, 699
GsaI	CCCAGC	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	257, 261
HapII	CCGG	9 cut(s)	144, 258, 262, 270, 284, 310, 317, 330, 578
HgaI	GACGC	1 cut(s)	477
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	2 cut(s)	341, 680
HinfI	GANTC	4 cut(s)	30, 265, 635, 785
HpaII	CCGG	9 cut(s)	144, 258, 262, 270, 284, 310, 317, 330, 578
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	219, 280, 498, 684
Hpy188III	TCNNGA	5 cut(s)	330, 386, 515, 551, 639
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	41, 559
HpyCH4IV	ACGT	4 cut(s)	67, 305, 547, 726
HpyCH4V	TGCA	4 cut(s)	27, 78, 506, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	4 cut(s)	67, 305, 547, 726
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	341, 680
Kpn2I	TCCGGA	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	161, 418, 435
LmnI	GCTCC	3 cut(s)	351, 493, 667
Lsp1109I	GCAGC	2 cut(s)	76, 710
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	4 cut(s)	67, 305, 547, 726
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	3 cut(s)	163, 420, 437
MboI	GATC	3 cut(s)	161, 418, 435
MboII	GAAGA	8 cut(s)	48, 166, 189, 242, 407, 654, 734, 763
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	3 cut(s)	97, 531, 540
MlyI	GAGTC	2 cut(s)	629, 779
MmeI	TCCRAC	3 cut(s)	278, 329, 645
MnlI	CCTC	9 cut(s)	103, 217, 294, 326, 391, 393, 457, 684, 747
MroI	TCCGGA	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	9 cut(s)	144, 258, 262, 270, 284, 310, 317, 330, 578
MspR9I	CCNGG	2 cut(s)	145, 270
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	698
NaeI	GCCGGC	1 cut(s)	259
NciI	CCSGG	2 cut(s)	145, 270
NdeII	GATC	3 cut(s)	161, 418, 435
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	341, 680
NlaIV	GGNNCC	4 cut(s)	353, 402, 669, 707
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	30, 265
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	91, 700
PleI	GAGTC	2 cut(s)	629, 779
PpsI	GAGTC	2 cut(s)	629, 779
PspFI	CCCAGC	1 cut(s)	701
PspN4I	GGNNCC	4 cut(s)	353, 402, 669, 707
PspPI	GGNCC	1 cut(s)	575
PsrI	GAACNNNNNNTAC	2 cut(s)	698, 730
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	701
RigI	GGCCGGCC	1 cut(s)	261
RsaI	GTAC	4 cut(s)	308, 430, 630, 716
RsaNI	GTAC	4 cut(s)	307, 429, 629, 715
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	2 cut(s)	90, 699
Sau3AI	GATC	3 cut(s)	161, 418, 435
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	2 cut(s)	629, 779
ScrFI	CCNGG	2 cut(s)	145, 270
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	201, 384
SmoI	CTYRAG	2 cut(s)	201, 384
Sse9I	AATT	3 cut(s)	97, 531, 540
SsiI	CCGC	4 cut(s)	177, 416, 426, 709
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	143, 268
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	41, 559
TaiI	ACGT	4 cut(s)	70, 308, 550, 729
TaqI	TCGA	2 cut(s)	101, 438
TasI	AATT	3 cut(s)	97, 531, 540
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	30, 265
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	3 cut(s)	171, 240, 752
TseI	GCWGC	2 cut(s)	89, 698
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	171, 240, 752
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	422
ZraI	GACGTC	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.