Prupe.8G017800_v2.0.a1

psbP domain-containing protein 4

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
1650805 .. 1652848
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G017800.1

Sequence Viewer

Length: 816 bp
ATGAGAACAGCTTTACTTACCAGTGGCAGCTTTTGCTGGACTTATCAGCCGCAAGCAGTCCCTTCCCAGAGTTTGGTTGTTCATTCTTCATTGGAACATGGAACTTGTAGGACAAAAGCAGAGAATGGCTTGGTTGATGAAGAAGCTGAGAACTTTTCTGGGATTTTGAAGAGAAGATCAGTGCTGTGGGCAGGAGTTTCTTTGTTTTCTTCTGCAGTATTGGGTTTTCCAAGGGAAGGCTTGGCAGTGGTAAAACAAGGTCTTCTAGCAGGCAGGATTCCCGGTCTGTCTGAACCGGATGAACAAGGATGGAGGACATACCGCAGACCGGATGAAAAGTCTGGAGGTCATGGCGTTGGTTGGAGCCCTATCATCCCTTATCTCTTTTCAGTTCCTCAAGATTGGGAAGAGGTTCCTGTATCAATAGCAGATCTAGGTGGTACAGAGATCGATTTGAGATTCGGTAGCTCCAAGGAGGGGCGTCTCTCTGTCATTGTTGCCCCTGTCCTGAGATTTGCAGATAATCTTGATGGAGATGCCACAATTGAAAAAATTGGACGTCCAGAGACAGTGATCAATGCATTCGGACCGGAAGTTATTGGGGAGAATGTTGAAGGGAAGGTTATGAGCATAAATGTTGTACAAGACTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCTCCTCATGTTCTGATCACAGCAACTGCAGCTGGGAATCGCCTGTACTTGTTTAATGTGACCGGAAGTGGTCTTCAGTGGAAGAGGCATTACAAGGATTTGAAAAAAATAGCCGACTCCTTTCGTGTCGTCTAA

Protein Analysis

272

Amino Acids

29.73

Weight (kDa)

5.8

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 73
AciI CCGC 2 cut(s) 50, 322
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 2 cut(s) 481, 559
AfaI GTAC 3 cut(s) 442, 642, 728
AfiI CCNNNNNNNGG 4 cut(s) 73, 236, 328, 477
AgsI TTSAA 4 cut(s) 169, 548, 614, 784
AluBI AGCT 5 cut(s) 11, 30, 146, 468, 713
AluI AGCT 5 cut(s) 11, 30, 146, 468, 713
Alw26I GTCTC 2 cut(s) 488, 560
AlwNI CAGNNNCTG 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 27, 710
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 755, 787
BbsI GAAGAC 2 cut(s) 254, 746
BbvI GCAGC 2 cut(s) 39, 722
BccI CCATC 2 cut(s) 303, 524
BclI TGATCA 2 cut(s) 573, 696
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 488, 560
BfaI CTAG 2 cut(s) 266, 434
BfmI CTRYAG 2 cut(s) 213, 708
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 28, 50, 711
BlsI GCNGC 3 cut(s) 29, 51, 712
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 3 cut(s) 365, 414, 681
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 254, 746
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 481, 559
BsaJI CCNNGG 2 cut(s) 230, 471
BsaWI WCCGGW 4 cut(s) 295, 328, 589, 743
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 236, 328, 477
Bse1I ACTGG 2 cut(s) 21, 667
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 230, 471
BseGI GGATG 4 cut(s) 304, 314, 337, 372
BseLI CCNNNNNNNGG 4 cut(s) 73, 236, 328, 477
BseMII CTCAG 2 cut(s) 138, 500
BseNI ACTGG 2 cut(s) 21, 667
BseRI GAGGAG 1 cut(s) 675
BseXI GCAGC 2 cut(s) 39, 722
BseYI CCCAGC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 450
BsiSI CCGG 5 cut(s) 282, 296, 329, 590, 744
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 4 cut(s) 73, 236, 328, 477
BsmAI GTCTC 2 cut(s) 488, 560
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 368
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 5 cut(s) 176, 430, 447, 573, 696
BspACI CCGC 2 cut(s) 50, 322
BspCNI CTCAG 2 cut(s) 139, 501
BspDI ATCGAT 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 365, 414, 681
BspMAI CTGCAG 2 cut(s) 217, 712
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 21, 667
BssECI CCNNGG 2 cut(s) 230, 471
BssMI GATC 5 cut(s) 176, 430, 447, 573, 696
BssNI GRCGYC 2 cut(s) 481, 559
BssT1I CCWWGG 2 cut(s) 230, 471
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 3 cut(s) 164, 402, 758
BstACI GRCGYC 2 cut(s) 481, 559
BstAPI GCANNNNNTGC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 54, 271
BstDEI CTNAG 2 cut(s) 147, 509
BstF5I GGATG 4 cut(s) 304, 314, 337, 372
BstKTI GATC 5 cut(s) 179, 433, 450, 576, 699
BstMAI GTCTC 2 cut(s) 488, 560
BstMBI GATC 5 cut(s) 176, 430, 447, 573, 696
BstMWI GCNNNNNNNGC 2 cut(s) 33, 710
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 213, 708
BstV1I GCAGC 2 cut(s) 39, 722
BstV2I GAAGAC 2 cut(s) 254, 746
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 450
BtsCI GGATG 4 cut(s) 304, 314, 337, 372
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 5 cut(s) 28, 186, 252, 576, 764
Cac8I GCNNGC 2 cut(s) 54, 271
CaiI CAGNNNCTG 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 587
ClaI ATCGAT 1 cut(s) 450
CpoI CGGWCCG 1 cut(s) 587
CseI GACGC 1 cut(s) 470
Csp6I GTAC 3 cut(s) 441, 641, 727
CspI CGGWCCG 1 cut(s) 587
CviAII CATG 3 cut(s) 98, 350, 689
CviQI GTAC 3 cut(s) 441, 641, 727
DdeI CTNAG 2 cut(s) 147, 509
DpnI GATC 5 cut(s) 178, 432, 449, 575, 698
DpnII GATC 5 cut(s) 176, 430, 447, 573, 696
Eam1104I CTCTTC 3 cut(s) 164, 402, 758
EarI CTCTTC 3 cut(s) 164, 402, 758
Eco130I CCWWGG 2 cut(s) 230, 471
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 740
EcoT14I CCWWGG 2 cut(s) 230, 471
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 230, 471
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 3 cut(s) 101, 353, 692
FaiI YATR 8 cut(s) 99, 319, 351, 626, 632, 661, 672, 690
FaqI GGGAC 1 cut(s) 44
FatI CATG 3 cut(s) 97, 349, 688
FbaI TGATCA 2 cut(s) 573, 696
Fnu4HI GCNGC 3 cut(s) 28, 50, 711
FokI GGATG 4 cut(s) 311, 321, 344, 359
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 28, 50, 711
FspBI CTAG 2 cut(s) 266, 434
GluI GCNGC 3 cut(s) 28, 50, 711
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 1 cut(s) 363
HapII CCGG 5 cut(s) 282, 296, 329, 590, 744
HgaI GACGC 1 cut(s) 470
Hin1I GRCGYC 2 cut(s) 481, 559
Hin1II CATG 3 cut(s) 101, 353, 692
HinfI GANTC 5 cut(s) 277, 459, 647, 718, 797
HpaII CCGG 5 cut(s) 282, 296, 329, 590, 744
Hpy188I TCNGA 3 cut(s) 292, 587, 696
Hpy188III TCNNGA 6 cut(s) 342, 398, 508, 527, 563, 651
HpyAV CCTTC 4 cut(s) 72, 230, 608, 613
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 4 cut(s) 215, 518, 581, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 710
HpyF3I CTNAG 2 cut(s) 147, 509
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 2 cut(s) 481, 559
Hsp92II CATG 3 cut(s) 101, 353, 692
Ksp22I TGATCA 2 cut(s) 573, 696
Kzo9I GATC 5 cut(s) 176, 430, 447, 573, 696
LmnI GCTCC 3 cut(s) 363, 473, 679
Lsp1109I GCAGC 2 cut(s) 39, 722
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 266, 434
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 1 cut(s) 739
MalI GATC 5 cut(s) 178, 432, 449, 575, 698
MboI GATC 5 cut(s) 176, 430, 447, 573, 696
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 543, 552
MlyI GAGTC 2 cut(s) 641, 791
MmeI TCCRAC 2 cut(s) 341, 657
MnlI CCTC 8 cut(s) 306, 338, 403, 405, 469, 693, 696, 759
Mph1103I ATGCAT 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 5 cut(s) 282, 296, 329, 590, 744
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 33, 710
NciI CCSGG 1 cut(s) 282
NdeII GATC 5 cut(s) 176, 430, 447, 573, 696
NlaIII CATG 3 cut(s) 101, 353, 692
NlaIV GGNNCC 3 cut(s) 365, 414, 681
NmuCI GTSAC 1 cut(s) 739
NsiI ATGCAT 1 cut(s) 583
PctI GAATGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 277, 459, 718
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 3 cut(s) 29, 51, 712
PleI GAGTC 2 cut(s) 641, 791
PpsI GAGTC 2 cut(s) 641, 791
PspFI CCCAGC 1 cut(s) 713
PspN4I GGNNCC 3 cut(s) 365, 414, 681
PspPI GGNCC 1 cut(s) 587
PstI CTGCAG 2 cut(s) 217, 712
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 3 cut(s) 442, 642, 728
RsaNI GTAC 3 cut(s) 441, 641, 727
Rsr2I CGGWCCG 1 cut(s) 587
RsrII CGGWCCG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 3 cut(s) 28, 50, 711
Sau3AI GATC 5 cut(s) 176, 430, 447, 573, 696
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 2 cut(s) 641, 791
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 1 cut(s) 526
SfcI CTRYAG 2 cut(s) 213, 708
SinI GGWCC 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 2 cut(s) 543, 552
SsiI CCGC 2 cut(s) 50, 322
SspMI CTAG 2 cut(s) 266, 434
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 230, 471
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 450
TasI AATT 2 cut(s) 543, 552
TatI WGTACW 2 cut(s) 640, 726
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 3 cut(s) 277, 459, 718
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 5 cut(s) 28, 186, 252, 576, 764
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 2 cut(s) 27, 710
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 5 cut(s) 71, 78, 153, 315, 348
TspRI CASTG 5 cut(s) 28, 186, 252, 576, 764
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 266, 434
ZraI GACGTC 1 cut(s) 560
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.