Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014267

Physical Location & Seq

Genomic Coordinates Reverse (-)

893563 .. 895120

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00810.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCTATTCTTCAAAGTTCCACGTGTATTCTTTGGAAAAATCCAAGATTTGTGCACCACAAATACTCAAAAAATCAGAAGCACCGAGAACCTCAACTTCCACACGGTTCTATTGGTCTTAAATTTATCTGGTCGCAAGCTGAAAAATTTACTGAAATTCTCGCTTGTTTCTTGTGCTAGTAAAGTGGTAGAGGAAATGACAACAGCCTTGCTTATCAGTTGCAGATTTTCGCACAGTTTGGTTGTGCAGTCTGCATTTGAACGTGGAACTTGCAGGACAAAAGCTGCCTCAAGTTCAACAGAAAATGGTTTCGTTGAGGGAGAAGCTGATAAATTCTCCGGGATTTTGAAGAGACGATCAGTGTTGCTGTCCGCAGGAGTTTCTTTGCTTTCTTCTCAAGTGTTTGGTTTTCCGAGAGAGGGATTGGCAGTGGTGAAACAAGGTCTTCTGGCCGGCCGGATTCCCGGTCTGTCCGAACCGGATGAGCAAGGTTGGAGGACATACCGGAGACCGGATGAGAAGTCCGGAGGGCACGGCGTTGGTTGGAGCCCTATCATCCCTTATCTCTTTTCAGTTCCTCAAGACTGGGAAGAGGTTCCAGTATCAATAGCGGATCTAGGCGGTACAGAGATCGATTTGAGATTTGGTAGCCCCAAGGAGGGACGCATTTCTGTCATTGTTGCTCCCGTTCTGAGATTTGCAGATAATCTTGATGGAGATGCCACAATTGAAAAAATTGGACGTCCAGAGACAGTGATCAACGCATTTGGACCGGAAGTTATTGGCGAAAATGTTGAAGGAAAGGTTATGAGCATAAATGTCGTACAAGACTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCACTGATAACAGCAACCGCAGCTGGGAACCGCCTGTACTTGTTTAACGTAACTGGAAGTGGTCTTCAGTGGAAGAGGCATTACAAGGACTTGAAAAAAATAGCCGACTCCTTTCGTGTCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

333

Amino Acids

36.57

Weight (kDa)

8.95

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77090
fragaria_vesca	FvH4_2g14791
malus_domestica	MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica	Prupe.8G017800_v2.0.a1
pyrus_communis	pycom10g00810
rosa_chinensis	RchiOBHm_Chr6g0277361
rosa_laevigata	RLG00000013307 RLG00000029732
rosa_multiflora	Rmu_sc0000030.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191400
rosa_rugosa	Rorug01G0093300
rosa_samantha	Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana	Rw6G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	745
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	5 cut(s)	372, 611, 621, 891, 904
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	2 cut(s)	450, 454
AcsI	RAATTY	4 cut(s)	121, 145, 155, 332
AcuI	CTGAAG	1 cut(s)	923
AcvI	CACGTG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	742
AfaI	GTAC	3 cut(s)	625, 825, 911
AfiI	CCNNNNNNNGG	5 cut(s)	419, 511, 658, 659, 897
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	7 cut(s)	13, 260, 297, 349, 731, 797, 967
AluBI	AGCT	4 cut(s)	139, 284, 326, 896
AluI	AGCT	4 cut(s)	139, 284, 326, 896
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	3 cut(s)	346, 502, 743
Alw44I	GTGCAC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	2 cut(s)	450, 454
ApaLI	GTGCAC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	284, 893
ApoI	RAATTY	4 cut(s)	121, 145, 155, 332
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	770
AsuC2I	CCSGG	2 cut(s)	340, 465
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	2 cut(s)	56, 534
BanII	GRGCYC	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	437, 929
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	271, 905
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	550
BcgI	CGANNNNNNTGC	2 cut(s)	802, 836
BclI	TGATCA	1 cut(s)	756
BcnI	CCSGG	2 cut(s)	340, 465
BcoDI	GTCTC	3 cut(s)	346, 502, 743
BfaI	CTAG	2 cut(s)	177, 617
BisI	GCNGC	2 cut(s)	285, 894
BlsI	GCNGC	2 cut(s)	286, 895
Bme1390I	CCNGG	2 cut(s)	340, 465
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	4 cut(s)	548, 597, 864, 902
BmrFI	CCNGG	2 cut(s)	340, 465
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	2 cut(s)	437, 929
BpuEI	CTTGAG	3 cut(s)	274, 381, 564
BpuMI	CCSGG	2 cut(s)	340, 465
Bsa29I	ATCGAT	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	742
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	654
BsaWI	WCCGGW	5 cut(s)	478, 504, 511, 524, 772
Bsc4I	CCNNNNNNNGG	5 cut(s)	419, 511, 658, 659, 897
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	4 cut(s)	590, 599, 850, 931
BseAI	TCCGGA	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	3 cut(s)	487, 520, 555
BseLI	CCNNNNNNNGG	5 cut(s)	419, 511, 658, 659, 897
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	4 cut(s)	590, 599, 850, 931
BseSI	GKGCMC	2 cut(s)	56, 534
BseX3I	CGGCCG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	271, 905
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	452, 456
BshVI	ATCGAT	1 cut(s)	633
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	9 cut(s)	339, 453, 457, 465, 479, 505, 512, 525, 773
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	5 cut(s)	419, 511, 658, 659, 897
BsmAI	GTCTC	3 cut(s)	346, 502, 743
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	452, 456
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	56, 534, 551
Bsp13I	TCCGGA	1 cut(s)	524
Bsp143I	GATC	4 cut(s)	356, 613, 630, 756
BspACI	CCGC	5 cut(s)	372, 611, 621, 891, 904
BspANI	GGCC	2 cut(s)	452, 456
BspCNI	CTCAG	1 cut(s)	684
BspDI	ATCGAT	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	524
BspLI	GGNNCC	4 cut(s)	548, 597, 864, 902
BspPI	GGATC	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	4 cut(s)	590, 599, 850, 931
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	4 cut(s)	356, 613, 630, 756
BssNI	GRCGYC	1 cut(s)	742
BssT1I	CCWWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	106, 236, 754
Bst6I	CTCTTC	3 cut(s)	344, 585, 941
BstACI	GRCGYC	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	137, 454
BstDEI	CTNAG	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	487, 520, 555
BstKTI	GATC	4 cut(s)	359, 616, 633, 759
BstMAI	GTCTC	3 cut(s)	346, 502, 743
BstMBI	GATC	4 cut(s)	356, 613, 630, 756
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	893
BstSCI	CCNGG	2 cut(s)	338, 463
BstSLI	GKGCMC	2 cut(s)	56, 534
BstV1I	GCAGC	2 cut(s)	271, 905
BstV2I	GAAGAC	2 cut(s)	437, 929
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BstZI	CGGCCG	1 cut(s)	454
Bsu15I	ATCGAT	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	452, 456
BsuTUI	ATCGAT	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	487, 520, 555
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	5 cut(s)	366, 435, 759, 875, 947
Cac8I	GCNNGC	2 cut(s)	137, 454
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	770
ClaI	ATCGAT	1 cut(s)	633
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	624, 824, 910
CviAII	CATG	1 cut(s)	872
CviQI	GTAC	3 cut(s)	624, 824, 910
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	4 cut(s)	358, 615, 632, 758
DpnII	GATC	4 cut(s)	356, 613, 630, 756
EaeI	YGGCCR	2 cut(s)	450, 454
EagI	CGGCCG	1 cut(s)	454
Eam1104I	CTCTTC	3 cut(s)	344, 585, 941
EarI	CTCTTC	3 cut(s)	344, 585, 941
EclXI	CGGCCG	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	770
Eco52I	CGGCCG	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	923
Eco72I	CACGTG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	654
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	1 cut(s)	875
FaiI	YATR	6 cut(s)	502, 809, 815, 844, 855, 873
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	285, 894
FokI	GGATG	3 cut(s)	494, 527, 542
FriOI	GRGCYC	1 cut(s)	551
FseI	GGCCGGCC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	285, 894
FspBI	CTAG	2 cut(s)	177, 617
GluI	GCNGC	2 cut(s)	285, 894
GsaI	CCCAGC	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	452, 456
HapII	CCGG	9 cut(s)	339, 453, 457, 465, 479, 505, 512, 525, 773
HgaI	GACGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	1 cut(s)	875
HinfI	GANTC	3 cut(s)	460, 830, 980
HpaII	CCGG	9 cut(s)	339, 453, 457, 465, 479, 505, 512, 525, 773
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	77, 414, 475, 693
Hpy188III	TCNNGA	5 cut(s)	525, 581, 710, 746, 834
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	791
HpyCH4III	ACNGT	3 cut(s)	106, 236, 754
HpyCH4IV	ACGT	4 cut(s)	22, 262, 742, 921
HpyCH4V	TGCA	7 cut(s)	54, 222, 247, 254, 273, 701, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	893
HpyF3I	CTNAG	1 cut(s)	692
HpySE526I	ACGT	4 cut(s)	22, 262, 742, 921
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	1 cut(s)	875
Kpn2I	TCCGGA	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	4 cut(s)	356, 613, 630, 756
LmnI	GCTCC	3 cut(s)	546, 688, 862
Lsp1109I	GCAGC	2 cut(s)	271, 905
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	177, 617
MaeII	ACGT	4 cut(s)	22, 262, 742, 921
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	4 cut(s)	358, 615, 632, 758
MboI	GATC	4 cut(s)	356, 613, 630, 756
MboII	GAAGA	7 cut(s)	361, 384, 437, 602, 849, 929, 958
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	3 cut(s)	56, 534, 551
MluCI	AATT	6 cut(s)	121, 145, 155, 332, 726, 735
MlyI	GAGTC	2 cut(s)	824, 974
MmeI	TCCRAC	3 cut(s)	473, 524, 840
MroI	TCCGGA	1 cut(s)	524
MroNI	GCCGGC	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	2 cut(s)	119, 918
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	9 cut(s)	339, 453, 457, 465, 479, 505, 512, 525, 773
MspR9I	CCNGG	2 cut(s)	340, 465
MunI	CAATTG	1 cut(s)	726
MwoI	GCNNNNNNNGC	1 cut(s)	893
NaeI	GCCGGC	1 cut(s)	454
NciI	CCSGG	2 cut(s)	340, 465
NdeII	GATC	4 cut(s)	356, 613, 630, 756
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	875
NlaIV	GGNNCC	4 cut(s)	548, 597, 864, 902
PdiI	GCCGGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	286, 895
PleI	GAGTC	2 cut(s)	824, 974
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	2 cut(s)	824, 974
Ppu21I	YACGTR	1 cut(s)	23
PspCI	CACGTG	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	896
PspN4I	GGNNCC	4 cut(s)	548, 597, 864, 902
PspPI	GGNCC	1 cut(s)	770
PsrI	GAACNNNNNNTAC	2 cut(s)	893, 925
PsuI	RGATCY	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	896
RigI	GGCCGGCC	1 cut(s)	456
RsaI	GTAC	3 cut(s)	625, 825, 911
RsaNI	GTAC	3 cut(s)	624, 824, 910
SaqAI	TTAA	2 cut(s)	119, 918
SatI	GCNGC	2 cut(s)	285, 894
Sau3AI	GATC	4 cut(s)	356, 613, 630, 756
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	2 cut(s)	824, 974
ScrFI	CCNGG	2 cut(s)	340, 465
SduI	GDGCHC	3 cut(s)	56, 534, 551
SfaNI	GCATC	1 cut(s)	709
SinI	GGWCC	1 cut(s)	770
SmlI	CTYRAG	3 cut(s)	289, 396, 579
SmoI	CTYRAG	3 cut(s)	289, 396, 579
Sse9I	AATT	6 cut(s)	121, 145, 155, 332, 726, 735
SsiI	CCGC	5 cut(s)	372, 611, 621, 891, 904
SspMI	CTAG	2 cut(s)	177, 617
StyD4I	CCNGG	2 cut(s)	338, 463
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	106, 236, 754
TaiI	ACGT	4 cut(s)	25, 265, 745, 924
TaqI	TCGA	1 cut(s)	633
TasI	AATT	6 cut(s)	121, 145, 155, 332, 726, 735
TatI	WGTACW	1 cut(s)	909
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	119, 918
Tru9I	TTAA	2 cut(s)	119, 918
TscAI	CASTG	5 cut(s)	366, 435, 759, 882, 947
TseI	GCWGC	2 cut(s)	284, 893
TspRI	CASTG	5 cut(s)	366, 435, 759, 882, 947
VneI	GTGCAC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	4 cut(s)	121, 145, 155, 332
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	2 cut(s)	177, 617
ZraI	GACGTC	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.