AT1G77480

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29114449 .. 29117344
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77480.1

Sequence Viewer

Length: 1401 bp
ATGATGAATCCGAATAAGCAGCAAAGAAGAAACCTTTACTTCTTCTTCGTCTTCGTCTTCTATGTCTTCATCCTCTGTGCTCGCTTTCAAACCTCTGAAGCTACTAAAGACTCGTCGGCTCAAGTGAAGTTACAGAATCGTCGACTTAGCTCCACCGTCGTGTTTCCTGTCTCCGGGAATGTGTATCCTCTTGGGTACTATTATGTGTTGCTTAACATTGGCAACCCACCTAAGCTCTTTGACTTGGACATTGACACTGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCTTGCAACGGTTGCACAAAGCCTCGTGCTAAGCAGTACAAGCCCAATCACAACACTTTGCCTTGTTCACACATCTTGTGTTCTGGTCTTGACCTTCCCCAGGACAGACCTTGTGCTGACCCTGAGGATCAATGTGACTATGAAATCGGATACTCCGATCATGCATCATCTATTGGTGCACTTGTAACTGATGAGGTTCCTCTAAAACTCGCAAATGGCTCCATTATGAATCTTCGTTTGACATTTGGATGTGGGTATGATCAGCAGAATCCTGGTCCACATCCTCCTCCTCCAACAGCGGGAATACTTGGCCTTGGAAGAGGGAAAGTAGGCCTCTCAACTCAGCTAAAGTCCTTGGGGATAACGAAGAATGTGATTGTGCATTGCTTAAGTCATACTGGTAAAGGCTTTCTCTCTATTGGAGATGAGCTTGTTCCTTCTTCTGGAGTTACATGGACTTCATTGGCTACTAATTCACCTAGTAAAAACTACATGGCTGGACCAGCAGAGCTTCTCTTTAACGACAAGACCACAGGTGTCAAAGGCATTAACGTAGTTTTCGATAGTGGAAGCTCGTACACTTACTTCAATGCAGAAGCATACCAAGCTATTCTCGATCTTATAAGAAAAGACTTGAATGGGAAGCCTTTGACGGACACAAAAGATGATAAAAGCTTACCAGTCTGCTGGAAAGGCAAAAAACCTTTGAAATCACTTGATGAGGTTAAGAAATACTTCAAGACGATTACTTTACGATTTGGGAATCAAAAGAATGGTCAGCTATTTCAGGTTCCACCTGAGTCGTATCTCATAATCACCGAAAAAGGAAGAGTATGTTTGGGTATTCTGAATGGAACTGAAATCGGTCTCGAGGGCTACAATATCATTGGAGACATATCTTTCCAAGGGATAATGGTGATCTATGACAATGAGAAGCAGAGGATTGGATGGATTTCTTCAGACTGTGACAAACTTCCCAATGTGAATCACGACTATGGAGGAGATCTGTCGGAGGAAGCTTATCCAATAGGATTTGGTTTGATAAAAGAGCTTTTCTCAGGAAGTGATTCTTCAAAGAACAAGAACTTGGTCTCAGATGGAGAGCTTTGA

Protein Analysis

466

Amino Acids

51.24

Weight (kDa)

6.4

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 67 - 239 2.4e-44 Xylanase inhibitor N-terminal
Asp PF00026 67 - 413 3e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 279 - 414 8.1e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 590
AclWI GGATC 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 117, 1233
AfaI GTAC 3 cut(s) 197, 329, 869
AfiI CCNNNNNNNGG 6 cut(s) 173, 274, 299, 391, 590, 734
AflII CTTAAG 1 cut(s) 679
AgsI TTSAA 6 cut(s) 89, 880, 928, 1000, 1030, 1365
AjnI CCWGG 2 cut(s) 390, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 1361, 1393
AleI CACNNNNGTG 1 cut(s) 158
Alw21I GWGCWC 2 cut(s) 82, 472
Alw26I GTCTC 4 cut(s) 175, 1163, 1176, 1387
Alw44I GTGCAC 1 cut(s) 468
AlwI GGATC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 2 cut(s) 601, 622
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 1051, 1083
Asp700I GAANNNNTTC 2 cut(s) 1025, 1357
AspS9I GGNCC 2 cut(s) 566, 791
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 759, 1099, 1219
AvaI CYCGRG 1 cut(s) 1160
AvaII GGWCC 2 cut(s) 566, 791
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 472
BarI GAAGNNNNNNTAC 2 cut(s) 860, 892
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 3 cut(s) 43, 49, 58
Bbv12I GWGCWC 2 cut(s) 82, 472
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 1233, 1382
BciT130I CCWGG 2 cut(s) 392, 564
BciVI GTATCC 2 cut(s) 195, 434
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 175, 1163, 1176, 1387
BfaI CTAG 1 cut(s) 771
BfrI CTTAAG 1 cut(s) 679
BfuI GTATCC 2 cut(s) 195, 434
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 3 cut(s) 175, 392, 564
Bme18I GGWCC 2 cut(s) 566, 791
BmeT110I CYCGRG 1 cut(s) 1160
BmgT120I GGNCC 2 cut(s) 566, 791
BmiI GGNNCC 3 cut(s) 489, 511, 1083
BmrFI CCNGG 3 cut(s) 175, 392, 564
BmsI GCATC 2 cut(s) 277, 464
BpiI GAAGAC 3 cut(s) 43, 49, 58
BplI GAGNNNNNCTC 2 cut(s) 1331, 1363
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 175
BsaI GGTCTC 2 cut(s) 1163, 1387
BsaJI CCNNGG 4 cut(s) 390, 604, 645, 1195
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 274, 299, 391, 590, 734
Bse1I ACTGG 3 cut(s) 262, 694, 971
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 2 cut(s) 392, 564
BseDI CCNNGG 4 cut(s) 390, 604, 645, 1195
BseGI GGATG 4 cut(s) 69, 545, 571, 1244
BseLI CCNNNNNNNGG 6 cut(s) 173, 274, 299, 391, 590, 734
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 5 cut(s) 405, 647, 1080, 1362, 1398
BseNI ACTGG 3 cut(s) 262, 694, 971
BseRI GAGGAG 3 cut(s) 567, 570, 1305
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 603, 624
BsiHKAI GWGCWC 2 cut(s) 82, 472
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 6 cut(s) 173, 274, 299, 391, 590, 734
BsmAI GTCTC 4 cut(s) 175, 1163, 1176, 1387
BsnI GGCC 2 cut(s) 603, 624
Bso31I GGTCTC 2 cut(s) 1163, 1387
BsoBI CYCGRG 1 cut(s) 1160
Bsp1286I GDGCHC 2 cut(s) 82, 472
Bsp143I GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 590
BspANI GGCC 2 cut(s) 603, 624
BspCNI CTCAG 5 cut(s) 406, 646, 1081, 1361, 1397
BspLI GGNNCC 3 cut(s) 489, 511, 1083
BspPI GGATC 1 cut(s) 426
BspTI CTTAAG 1 cut(s) 679
BspTNI GGTCTC 2 cut(s) 1163, 1387
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 3 cut(s) 262, 694, 971
BssECI CCNNGG 4 cut(s) 390, 604, 645, 1195
BssMI GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 3 cut(s) 604, 645, 1195
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 392, 564
Bst4CI ACNGT 3 cut(s) 157, 302, 1256
Bst6I CTCTTC 2 cut(s) 604, 1114
BstAFI CTTAAG 1 cut(s) 679
BstAPI GCANNNNNTGC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 8 cut(s) 146, 231, 321, 414, 633, 1089, 1348, 1384
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 4 cut(s) 69, 545, 571, 1244
BstKTI GATC 6 cut(s) 421, 451, 553, 910, 1212, 1297
BstMAI GTCTC 4 cut(s) 175, 1163, 1176, 1387
BstMBI GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
BstMWI GCNNNNNNNGC 5 cut(s) 303, 331, 794, 896, 984
BstNI CCWGG 2 cut(s) 392, 564
BstSCI CCNGG 3 cut(s) 173, 390, 562
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 3 cut(s) 43, 49, 58
BstX2I RGATCY 1 cut(s) 1294
BstXI CCANNNNNNTGG 1 cut(s) 978
BstYI RGATCY 1 cut(s) 1294
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 2 cut(s) 195, 434
BsuRI GGCC 2 cut(s) 603, 624
BtsCI GGATG 4 cut(s) 69, 545, 571, 1244
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 3 cut(s) 255, 268, 287
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 566, 791
Csp6I GTAC 3 cut(s) 196, 328, 868
CviAII CATG 3 cut(s) 452, 744, 784
CviQI GTAC 3 cut(s) 196, 328, 868
DdeI CTNAG 8 cut(s) 146, 231, 321, 414, 633, 1089, 1348, 1384
DpnI GATC 6 cut(s) 420, 450, 552, 909, 1211, 1296
DpnII GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
Eam1104I CTCTTC 2 cut(s) 604, 1114
EarI CTCTTC 2 cut(s) 604, 1114
Eco130I CCWWGG 3 cut(s) 604, 645, 1195
Eco147I AGGCCT 1 cut(s) 624
Eco31I GGTCTC 2 cut(s) 1163, 1387
Eco47I GGWCC 2 cut(s) 566, 791
Eco57I CTGAAG 2 cut(s) 117, 1233
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 1160
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 390, 562
EcoT14I CCWWGG 3 cut(s) 604, 645, 1195
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 3 cut(s) 604, 645, 1195
FaeI CATG 3 cut(s) 455, 747, 787
FalI AAGNNNNNCTT 4 cut(s) 1010, 1042, 1345, 1377
FatI CATG 3 cut(s) 451, 743, 783
FauI CCCGC 1 cut(s) 583
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 4 cut(s) 56, 552, 558, 1251
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 771
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 2 cut(s) 603, 624
HapII CCGG 1 cut(s) 174
Hin1II CATG 3 cut(s) 455, 747, 787
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 964, 1308
HinfI GANTC 9 cut(s) 7, 110, 136, 520, 559, 1054, 1091, 1276, 1358
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 759, 1099, 1219
Hpy166II GTNNAC 5 cut(s) 143, 359, 470, 569, 870
Hpy188I TCNGA 8 cut(s) 12, 97, 440, 448, 1140, 1252, 1303, 1387
Hpy188III TCNNGA 7 cut(s) 380, 735, 905, 1030, 1160, 1280, 1350
Hpy8I GTNNAC 5 cut(s) 143, 359, 470, 569, 870
Hpy99I CGWCG 3 cut(s) 118, 144, 161
HpyAV CCTTC 2 cut(s) 395, 738
HpyCH4III ACNGT 3 cut(s) 157, 302, 1256
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 7 cut(s) 290, 297, 306, 455, 470, 673, 884
HpyF10VI GCNNNNNNNGC 5 cut(s) 303, 331, 794, 896, 984
HpyF3I CTNAG 8 cut(s) 146, 231, 321, 414, 633, 1089, 1348, 1384
HpySE526I ACGT 1 cut(s) 843
Hsp92II CATG 3 cut(s) 455, 747, 787
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
LmnI GCTCC 2 cut(s) 155, 515
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 277, 464
MaeI CTAG 1 cut(s) 771
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 6 cut(s) 129, 263, 425, 475, 739, 1256
MalI GATC 6 cut(s) 420, 450, 552, 909, 1211, 1296
MboI GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
MflI RGATCY 1 cut(s) 1294
MhlI GDGCHC 2 cut(s) 82, 472
MluCI AATT 1 cut(s) 763
MlyI GAGTC 2 cut(s) 104, 1100
MmeI TCCRAC 2 cut(s) 608, 1281
Mph1103I ATGCAT 1 cut(s) 457
MroXI GAANNNNTTC 2 cut(s) 1025, 1357
MseI TTAA 5 cut(s) 213, 680, 810, 840, 1017
MslI CAYNNNNRTG 3 cut(s) 158, 538, 1284
MspA1I CMGCKG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 175, 392, 564
MvaI CCWGG 2 cut(s) 392, 564
MwoI GCNNNNNNNGC 5 cut(s) 303, 331, 794, 896, 984
NciI CCSGG 1 cut(s) 175
NdeII GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
NlaIII CATG 3 cut(s) 455, 747, 787
NlaIV GGNNCC 3 cut(s) 489, 511, 1083
NmuCI GTSAC 3 cut(s) 263, 425, 1256
NsiI ATGCAT 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 1160
PceI AGGCCT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 849
PdmI GAANNNNTTC 2 cut(s) 1025, 1357
PfeI GAWTC 7 cut(s) 7, 136, 520, 559, 1054, 1276, 1358
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 2 cut(s) 104, 1099
PpsI GAGTC 2 cut(s) 104, 1099
PsiI TTATAA 1 cut(s) 914
Psp6I CCWGG 2 cut(s) 390, 562
PspGI CCWGG 2 cut(s) 390, 562
PspN4I GGNNCC 3 cut(s) 489, 511, 1083
PspPI GGNCC 2 cut(s) 566, 791
PsuI RGATCY 1 cut(s) 1294
RsaI GTAC 3 cut(s) 197, 329, 869
RsaNI GTAC 3 cut(s) 196, 328, 868
RseI CAYNNNNRTG 3 cut(s) 158, 538, 1284
SalI GTCGAC 1 cut(s) 141
SaqAI TTAA 5 cut(s) 213, 680, 810, 840, 1017
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 6 cut(s) 418, 448, 550, 907, 1209, 1294
Sau96I GGNCC 2 cut(s) 566, 791
SchI GAGTC 2 cut(s) 104, 1100
ScrFI CCNGG 3 cut(s) 175, 392, 564
SduI GDGCHC 2 cut(s) 82, 472
SfaNI GCATC 2 cut(s) 277, 464
Sfr274I CTCGAG 1 cut(s) 1160
SinI GGWCC 2 cut(s) 566, 791
SlaI CTCGAG 1 cut(s) 1160
SmiMI CAYNNNNRTG 3 cut(s) 158, 538, 1284
SmlI CTYRAG 3 cut(s) 120, 679, 1160
SmoI CTYRAG 3 cut(s) 120, 679, 1160
Sse9I AATT 1 cut(s) 763
SseBI AGGCCT 1 cut(s) 624
SsiI CCGC 1 cut(s) 590
SspMI CTAG 1 cut(s) 771
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 173, 390, 562
StyI CCWWGG 3 cut(s) 604, 645, 1195
TaaI ACNGT 3 cut(s) 157, 302, 1256
TaiI ACGT 1 cut(s) 846
TaqI TCGA 4 cut(s) 142, 852, 906, 1161
TaqII GACCGA 1 cut(s) 1145
TasI AATT 1 cut(s) 763
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 7 cut(s) 7, 136, 520, 559, 1054, 1276, 1358
Tru1I TTAA 5 cut(s) 213, 680, 810, 840, 1017
Tru9I TTAA 5 cut(s) 213, 680, 810, 840, 1017
TscAI CASTG 3 cut(s) 262, 268, 287
TseFI GTSAC 3 cut(s) 263, 425, 1256
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 3 cut(s) 263, 425, 1256
TspDTI ATGAA 5 cut(s) 20, 58, 447, 533, 741
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 3 cut(s) 262, 268, 287
Vha464I CTTAAG 1 cut(s) 679
VneI GTGCAC 1 cut(s) 468
VpaK11BI GGWCC 2 cut(s) 566, 791
XagI CCTNNNNNAGG 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 1160
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 2 cut(s) 1025, 1357
XspI CTAG 1 cut(s) 771
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.