RLG00000011715

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
12132545 .. 12135558
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011715

Sequence Viewer

Length: 1299 bp
ATGGGCAATCTCGACCTTGAAACCTGGACAATCTCTCCGCGTTGTCGACGCGGTCTTTTTCCGCTGGAGCGCGGTGAAACTTCCCAAAAGACTCCCTCACCCAGAGATGGCCAAATGGTGTGGATTGACATTGACGGCGTTTTTGGTTCTGGGTACTACTCTGTGTCCCTCAGCATAGGCAACCCAGGCAAGCGTTTCGACCTTGATATTGACACTGGTAGTGATCTCACATGGGTCCAATGTGATGCTCCCTGTACTGGCTGTACCAAGCCCCGCGAGCATCTTTATAAACCCAAAAACAACCTTGTCCAATGTGAAGACCCTCTTTGTGCGGCATTTCACTCACCGGCAAGTTACCCGTGTAACAACCCAAGTGACCAATGCGACTATGAGGTTGAATATGCTGATCAAGGTTCATCTCTGGGTGTGCTGGTCAAGGATTACTTTCCCCTGAAATTCACCAATGGCTCTCAACTTGGTCCTCGTTTGGCCTTTGGGTGTGGATATGATCAAAAACATTCTGGTCTAAGCATGCCCTCCACCACTGGAGTTCTTGGCCTTGGTACTGGCAAAGCAAGCATTGTGTCACAATTAAGTCGCTTGGGTTTAACTAGAAATGTGGTTGGTCACTGTCTAAGCAGCCAAGGAGGATTTCTATTCTTTGGGAACGATCTTGTCCCTTCTTCAGGAGTCATGTGGACTCCAATGTCACGTAACTCAAATCACTACTCATCCGGACCAGCAGAACTTGTCTTTAATGGAAAGCCCACTGGTGTGAAGGCCCTTAACTTGGTTTTTGACAGTGGGAGCTCCTACACTTACTTCAATTCCAAAGCTTATGAGGCATTAGTTAAACTGGTGAGAAACGATTTGAAAGGAAAGCCTCTGAAGGACGCAACTGAAGACAAATCACTGCCAATTTGCTGGAAAGGCAGCAAACCTTTCAAATCTGTTCACGATGCACAGAACTATTTCAAACCCTTAGCACTGAGCTTTACTAATGTCAAGAATGTTCAGCTGCATATATCACCTGAAGCTTATCTCATAGTTTCACAACATGGCAATGTGTGCTTGGGAATATTGAACGGCTCTGAAGTAGGACTGGAAAGTACGAACATCATTGGAGATATTAGTTTGCTAGATAAAATTTTGATATATGACAATGAAAACCAGCGAATTGGATGGGCTCCAGCAAATTGCAATAGGCTTCCCAAATCGGAATATTGTGAAGGTGTTTCCCAGCGTTATGTAGCCAATTTGGAAGAGTTCTGTCCTGCTTTTGCTTCTGATGATCAGTAA

Protein Analysis

433

Amino Acids

47.21

Weight (kDa)

5.94

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 53 - 223 2e-47 Xylanase inhibitor N-terminal
Asp PF00026 53 - 397 1.1e-16 Eukaryotic aspartyl protease
TAXi_C PF14541 261 - 396 2.8e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AasI GACNNNNNNGTC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 46
AccII CGCG 4 cut(s) 40, 51, 72, 276
AccIII TCCGGA 1 cut(s) 734
AciI CCGC 6 cut(s) 38, 51, 62, 72, 274, 332
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 455, 1146
AcuI CTGAAG 5 cut(s) 669, 908, 921, 1053, 1113
AfaI GTAC 5 cut(s) 155, 256, 265, 565, 1111
AfiI CCNNNNNNNGG 4 cut(s) 107, 257, 686, 790
AgsI TTSAA 7 cut(s) 20, 398, 826, 874, 946, 976, 1084
AjnI CCWGG 2 cut(s) 23, 184
AjuI GAANNNNNNNTTGG 2 cut(s) 636, 668
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 5 cut(s) 810, 836, 993, 1018, 1037
AluI AGCT 5 cut(s) 810, 836, 993, 1018, 1037
Alw21I GWGCWC 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 734
AoxI GGCC 4 cut(s) 109, 489, 556, 780
ApeKI GCWGC 3 cut(s) 639, 933, 1018
ApoI RAATTY 2 cut(s) 455, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 971
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 4 cut(s) 235, 479, 737, 781
AsuHPI GGTGA 6 cut(s) 86, 90, 336, 451, 871, 1020
AvaII GGWCC 3 cut(s) 235, 479, 737
BalI TGGCCA 1 cut(s) 111
BanII GRGCYC 2 cut(s) 812, 1189
BbsI GAAGAC 2 cut(s) 324, 909
Bbv12I GWGCWC 1 cut(s) 812
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 651, 945, 1005
BccI CCATC 2 cut(s) 101, 1176
BceAI ACGGC 2 cut(s) 151, 1102
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 2 cut(s) 25, 186
BclI TGATCA 3 cut(s) 406, 508, 1291
BfaI CTAG 2 cut(s) 612, 1139
BisI GCNGC 4 cut(s) 333, 640, 934, 1019
BlsI GCNGC 4 cut(s) 334, 641, 935, 1020
Bme1390I CCNGG 2 cut(s) 25, 186
Bme18I GGWCC 3 cut(s) 235, 479, 737
BmgT120I GGNCC 4 cut(s) 235, 479, 737, 781
BmiI GGNNCC 2 cut(s) 236, 1188
BmrFI CCNGG 2 cut(s) 25, 186
BmsI GCATC 3 cut(s) 235, 289, 949
BpiI GAAGAC 2 cut(s) 324, 909
BpmI CTGGAG 3 cut(s) 86, 567, 1173
Bpu10I CCTNAGC 2 cut(s) 170, 982
BsaAI YACGTR 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 184, 559, 643
BsaWI WCCGGW 1 cut(s) 734
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 257, 686, 790
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 7 cut(s) 220, 262, 550, 571, 775, 861, 1107
Bse3DI GCAATG 1 cut(s) 1069
BseAI TCCGGA 1 cut(s) 734
BseBI CCWGG 2 cut(s) 25, 186
BseDI CCNNGG 3 cut(s) 184, 559, 643
BseGI GGATG 2 cut(s) 731, 1187
BseLI CCNNNNNNNGG 4 cut(s) 107, 257, 686, 790
BseMI GCAATG 1 cut(s) 1069
BseMII CTCAG 2 cut(s) 184, 980
BseNI ACTGG 7 cut(s) 220, 262, 550, 571, 775, 861, 1107
BseXI GCAGC 3 cut(s) 651, 945, 1005
BseYI CCCAGC 1 cut(s) 1239
Bsh1236I CGCG 4 cut(s) 40, 51, 72, 276
BshFI GGCC 4 cut(s) 111, 491, 558, 782
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 2 cut(s) 347, 735
BslFI GGGAC 2 cut(s) 151, 662
BslI CCNNNNNNNGG 4 cut(s) 107, 257, 686, 790
BsmFI GGGAC 2 cut(s) 151, 662
BsnI GGCC 4 cut(s) 111, 491, 558, 782
Bsp1286I GDGCHC 2 cut(s) 812, 1189
Bsp13I TCCGGA 1 cut(s) 734
Bsp143I GATC 5 cut(s) 223, 406, 508, 670, 1291
BspACI CCGC 6 cut(s) 38, 51, 62, 72, 274, 332
BspANI GGCC 4 cut(s) 111, 491, 558, 782
BspCNI CTCAG 2 cut(s) 183, 981
BspEI TCCGGA 1 cut(s) 734
BspFNI CGCG 4 cut(s) 40, 51, 72, 276
BspLI GGNNCC 2 cut(s) 236, 1188
BsrDI GCAATG 1 cut(s) 1069
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 7 cut(s) 220, 262, 550, 571, 775, 861, 1107
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 184, 559, 643
BssMI GATC 5 cut(s) 223, 406, 508, 670, 1291
BssT1I CCWWGG 2 cut(s) 559, 643
Bst2UI CCWGG 2 cut(s) 25, 186
Bst4CI ACNGT 2 cut(s) 632, 803
Bst6I CTCTTC 1 cut(s) 1257
BstAPI GCANNNNNTGC 1 cut(s) 1068
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 191, 278, 533, 577
BstDEI CTNAG 5 cut(s) 170, 527, 635, 982, 989
BstENI CCTNNNNNAGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 731, 1187
BstFNI CGCG 4 cut(s) 40, 51, 72, 276
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 5 cut(s) 226, 409, 511, 673, 1294
BstMBI GATC 5 cut(s) 223, 406, 508, 670, 1291
BstMWI GCNNNNNNNGC 6 cut(s) 186, 277, 576, 842, 930, 1068
BstNI CCWGG 2 cut(s) 25, 186
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 23, 184
BstUI CGCG 4 cut(s) 40, 51, 72, 276
BstV1I GCAGC 3 cut(s) 651, 945, 1005
BstV2I GAAGAC 2 cut(s) 324, 909
BstXI CCANNNNNNTGG 2 cut(s) 924, 1178
BsuRI GGCC 4 cut(s) 111, 491, 558, 782
BtsCI GGATG 2 cut(s) 731, 1187
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 7 cut(s) 213, 543, 628, 768, 808, 911, 986
Cac8I GCNNGC 4 cut(s) 191, 278, 533, 577
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 4 cut(s) 235, 479, 737, 781
CseI GACGC 2 cut(s) 57, 902
Csp6I GTAC 5 cut(s) 154, 255, 264, 564, 1110
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 4 cut(s) 231, 532, 694, 1058
CviQI GTAC 5 cut(s) 154, 255, 264, 564, 1110
DdeI CTNAG 5 cut(s) 170, 527, 635, 982, 989
DpnI GATC 5 cut(s) 225, 408, 510, 672, 1293
DpnII GATC 5 cut(s) 223, 406, 508, 670, 1291
DrdI GACNNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 1257
EarI CTCTTC 1 cut(s) 1257
Ecl136II GAGCTC 1 cut(s) 810
Eco130I CCWWGG 2 cut(s) 559, 643
Eco24I GRGCYC 2 cut(s) 812, 1189
Eco47I GGWCC 3 cut(s) 235, 479, 737
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 5 cut(s) 669, 908, 921, 1053, 1113
EcoICRI GAGCTC 1 cut(s) 810
EcoNI CCTNNNNNAGG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 23, 184
EcoT14I CCWWGG 2 cut(s) 559, 643
EcoT38I GRGCYC 2 cut(s) 812, 1189
ErhI CCWWGG 2 cut(s) 559, 643
FaeI CATG 4 cut(s) 234, 535, 697, 1061
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 428, 460
FaqI GGGAC 2 cut(s) 151, 662
FatI CATG 4 cut(s) 230, 531, 693, 1057
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 3 cut(s) 406, 508, 1291
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 333, 640, 934, 1019
FokI GGATG 2 cut(s) 718, 1194
FriOI GRGCYC 2 cut(s) 812, 1189
Fsp4HI GCNGC 4 cut(s) 333, 640, 934, 1019
FspBI CTAG 2 cut(s) 612, 1139
GlaI GCGC 1 cut(s) 71
GluI GCNGC 4 cut(s) 333, 640, 934, 1019
GsaI CCCAGC 1 cut(s) 1243
GsuI CTGGAG 3 cut(s) 86, 567, 1173
HaeIII GGCC 4 cut(s) 111, 491, 558, 782
HapII CCGG 2 cut(s) 347, 735
HgaI GACGC 2 cut(s) 57, 902
HhaI GCGC 1 cut(s) 72
Hin1II CATG 4 cut(s) 234, 535, 697, 1061
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 834, 1035
HinfI GANTC 3 cut(s) 91, 690, 700
HpaII CCGG 2 cut(s) 347, 735
HphI GGTGA 6 cut(s) 86, 90, 336, 451, 871, 1020
Hpy166II GTNNAC 3 cut(s) 47, 699, 955
Hpy188I TCNGA 4 cut(s) 888, 1093, 1219, 1288
Hpy188III TCNNGA 5 cut(s) 11, 687, 735, 956, 1006
Hpy8I GTNNAC 3 cut(s) 47, 699, 955
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 690, 772, 883, 1223
HpyCH4III ACNGT 2 cut(s) 632, 803
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 3 cut(s) 962, 1021, 1200
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 277, 576, 842, 930, 1068
HpyF3I CTNAG 5 cut(s) 170, 527, 635, 982, 989
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 4 cut(s) 234, 535, 697, 1061
HspAI GCGC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 734
Ksp22I TGATCA 3 cut(s) 406, 508, 1291
Kzo9I GATC 5 cut(s) 223, 406, 508, 670, 1291
LmnI GCTCC 5 cut(s) 67, 253, 807, 815, 1192
Lsp1109I GCAGC 3 cut(s) 651, 945, 1005
LweI GCATC 3 cut(s) 235, 289, 949
MaeI CTAG 2 cut(s) 612, 1139
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 7 cut(s) 353, 362, 374, 585, 626, 708, 713
MalI GATC 5 cut(s) 225, 408, 510, 672, 1293
MboI GATC 5 cut(s) 223, 406, 508, 670, 1291
MboII GAAGA 4 cut(s) 329, 675, 914, 1274
MhlI GDGCHC 2 cut(s) 812, 1189
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 8 cut(s) 455, 590, 826, 918, 1146, 1176, 1195, 1255
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 3 cut(s) 85, 694, 699
MnlI CCTC 9 cut(s) 106, 179, 333, 385, 492, 547, 641, 835, 894
Mox20I TGGCCA 1 cut(s) 111
MroI TCCGGA 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 971
MscI TGGCCA 1 cut(s) 111
MseI TTAA 5 cut(s) 593, 608, 756, 786, 852
MslI CAYNNNNRTG 2 cut(s) 773, 1062
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 64, 1018
MspI CCGG 2 cut(s) 347, 735
MspR9I CCNGG 2 cut(s) 25, 186
MvaI CCWGG 2 cut(s) 25, 186
MvnI CGCG 4 cut(s) 40, 51, 72, 276
MwoI GCNNNNNNNGC 6 cut(s) 186, 277, 576, 842, 930, 1068
NdeII GATC 5 cut(s) 223, 406, 508, 670, 1291
NlaIII CATG 4 cut(s) 234, 535, 697, 1061
NlaIV GGNNCC 2 cut(s) 236, 1188
NmuCI GTSAC 4 cut(s) 374, 585, 626, 708
NspI RCATGY 1 cut(s) 535
OliI CACNNNNGTG 1 cut(s) 773
PaeI GCATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 971
PflFI GACNNNGTC 1 cut(s) 51
PkrI GCNGC 4 cut(s) 334, 641, 935, 1020
PleI GAGTC 3 cut(s) 85, 694, 698
PpsI GAGTC 3 cut(s) 85, 694, 698
Ppu21I YACGTR 1 cut(s) 713
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 23, 184
PspFI CCCAGC 1 cut(s) 1239
PspGI CCWGG 2 cut(s) 23, 184
PspN4I GGNNCC 2 cut(s) 236, 1188
PspPI GGNCC 4 cut(s) 235, 479, 737, 781
PsyI GACNNNGTC 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 5 cut(s) 155, 256, 265, 565, 1111
RsaNI GTAC 5 cut(s) 154, 255, 264, 564, 1110
RseI CAYNNNNRTG 2 cut(s) 773, 1062
SacI GAGCTC 1 cut(s) 812
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 5 cut(s) 593, 608, 756, 786, 852
SatI GCNGC 4 cut(s) 333, 640, 934, 1019
Sau3AI GATC 5 cut(s) 223, 406, 508, 670, 1291
Sau96I GGNCC 4 cut(s) 235, 479, 737, 781
SchI GAGTC 3 cut(s) 85, 694, 699
ScrFI CCNGG 2 cut(s) 25, 186
SduI GDGCHC 2 cut(s) 812, 1189
SfaNI GCATC 3 cut(s) 235, 289, 949
SinI GGWCC 3 cut(s) 235, 479, 737
SmiMI CAYNNNNRTG 2 cut(s) 773, 1062
SphI GCATGC 1 cut(s) 535
Sse9I AATT 8 cut(s) 455, 590, 826, 918, 1146, 1176, 1195, 1255
SsiI CCGC 6 cut(s) 38, 51, 62, 72, 274, 332
SspI AATATT 2 cut(s) 1080, 1223
SspMI CTAG 2 cut(s) 612, 1139
SstI GAGCTC 1 cut(s) 812
StyD4I CCNGG 2 cut(s) 23, 184
StyI CCWWGG 2 cut(s) 559, 643
TaaI ACNGT 2 cut(s) 632, 803
TaiI ACGT 1 cut(s) 715
TaqI TCGA 3 cut(s) 12, 46, 198
TasI AATT 8 cut(s) 455, 590, 826, 918, 1146, 1176, 1195, 1255
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 5 cut(s) 593, 608, 756, 786, 852
Tru9I TTAA 5 cut(s) 593, 608, 756, 786, 852
TscAI CASTG 7 cut(s) 220, 550, 635, 775, 808, 918, 993
TseFI GTSAC 4 cut(s) 374, 585, 626, 708
TseI GCWGC 3 cut(s) 639, 933, 1018
Tsp45I GTSAC 4 cut(s) 374, 585, 626, 708
TspDTI ATGAA 2 cut(s) 405, 1179
TspRI CASTG 7 cut(s) 220, 550, 635, 775, 808, 918, 993
Tth111I GACNNNGTC 1 cut(s) 51
VpaK11BI GGWCC 3 cut(s) 235, 479, 737
XagI CCTNNNNNAGG 1 cut(s) 684
XapI RAATTY 2 cut(s) 455, 1146
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 2 cut(s) 612, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.