Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003331

Physical Location & Seq

Genomic Coordinates Forward (+)

60814872 .. 60817397

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGCAATTTCGACCTTGAAAGCTGGACAATCTCTCCGCGTGGCGTTGTCGACGCGGTCTTTTTCCGCTGGCTGGCGCGGTACTACTCTGTGTCCCTCAGCATAGGCAACCCAGGCAAGCGTTTCGACCTTGATATTGACACTGGTAGTGATCTCACATGGGTCCAATGTGATGCTCCCTGTACTGGCTGTACCAAGCCCCGCGAGCATCTTTATAAACCCAAAAACAACCTTGTCCAATGTGAAGACCCTCTTTGTGCGGCATTTCACTCACCAGCAAGTTACCCGTGTAACAACCCAAGTGACCAATGCGACTATGAGGTTGAATATGCTGATCAAGGTTCATCTCTGGGTGTGCTGGTCAAGGATTACTTTCCCCTGAAATTCACCAATGGCTCTCAACTTGGTCCTCGTTTGGCCTTTGGGTGTGGATATGATCAAAAACATTCTGGTCTAAGCATGCCCCCAACCACTGGAGTTCTTGGCCTTGGTACTGGCAAAGCAAGCATTGTGTCACAATTAAGTCGCTTGGGTTTAACTAGAAATGTGGTTGGTCACTGTCTAAGCAGCCAAGGAGGATTTCTATTCTTTGGGAATGATCTTGTCCCTTCTTCAGGAGTCATGTGGACTCCAATGTCACGTAACTCAAATCACTACTCATCCGGACCAGCAGAACTTGTCTTTAATGGAAAGCCCACTGGTGTGAAGGCCCTTAACTTGGTTTTTGACAGTGGGAGCTCCTACACTTACTTCAATTCCAAAGCTTATGAGGCATTAGTTAAACTGGTGAGAAACGATTTGAAAGGAAAGCCTCTGAAGGACGCAACTGAAGACAAATCACTGCCAATTTGCTGGAAAGGCAGCAAACCTTTCAAATCTGTTCACGATGCACAGAACTATTTCAAACCCTTAGCACTGAGCTTTACTAATGTCAAGAATGTTCAGCTGCATATATCACCTGAAGCTTATCTCATAGTTTCAGTAAGCATCCCTATTTTATTTCTTATTTTACCCCCTTCTGTTAGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

343

Amino Acids

37.5

Weight (kDa)

8.43

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	29 - 199	9.7e-48	Xylanase inhibitor N-terminal
Asp	PF00026	29 - 270	1.2e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	237 - 324	1.5e-06	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44130 AT1G77480 AT1G77480
fragaria_vesca	FvH4_2g27390 FvH4_2g27390 FvH4_2g27390
malus_domestica	MD15G1345400.v1.1
prunus_persica	Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.7G031200_v2.0.a1
pyrus_communis	pycom15g30990
rosa_chinensis	RchiOBHm_Chr6g0296231
rosa_laevigata	RLG00000011715
rosa_roxburghii	Rroxscaffold_7G00171720 Rroxscaffold_7G00178340
rosa_rugosa	Rorug06G0259700.1 Rorug06G0259800.1
rosa_samantha	Rh6AG371900 Rh6BG379800 Rh6CG385200 Rh6DG372400
rosa_wichuraiana	Rw6G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AasI	GACNNNNNNGTC	1 cut(s)	634
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	4 cut(s)	40, 56, 79, 204
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	6 cut(s)	38, 56, 67, 79, 202, 260
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	4 cut(s)	597, 836, 849, 981
AfaI	GTAC	4 cut(s)	83, 184, 193, 493
AfiI	CCNNNNNNNGG	5 cut(s)	73, 185, 473, 614, 718
AgsI	TTSAA	6 cut(s)	20, 326, 754, 802, 874, 904
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	6 cut(s)	24, 738, 764, 921, 946, 965
AluI	AGCT	6 cut(s)	24, 738, 764, 921, 946, 965
Alw21I	GWGCWC	1 cut(s)	740
Aor13HI	TCCGGA	1 cut(s)	662
AoxI	GGCC	3 cut(s)	417, 484, 708
ApeKI	GCWGC	3 cut(s)	567, 861, 946
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	899
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	163, 407, 665, 709
AsuHPI	GGTGA	4 cut(s)	264, 379, 799, 948
AvaII	GGWCC	3 cut(s)	163, 407, 665
BanII	GRGCYC	1 cut(s)	740
BbsI	GAAGAC	2 cut(s)	252, 837
Bbv12I	GWGCWC	1 cut(s)	740
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	579, 873, 933
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	2 cut(s)	334, 436
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	4 cut(s)	261, 568, 862, 947
BlsI	GCNGC	4 cut(s)	262, 569, 863, 948
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	3 cut(s)	163, 407, 665
BmgT120I	GGNCC	4 cut(s)	163, 407, 665, 709
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	163, 217, 877, 996
BpiI	GAAGAC	2 cut(s)	252, 837
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	2 cut(s)	98, 910
BsaAI	YACGTR	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	112, 487, 571
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 185, 473, 614, 718
Bse1I	ACTGG	6 cut(s)	148, 190, 478, 499, 703, 789
BseAI	TCCGGA	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	112, 487, 571
BseGI	GGATG	2 cut(s)	659, 987
BseLI	CCNNNNNNNGG	5 cut(s)	73, 185, 473, 614, 718
BseMII	CTCAG	2 cut(s)	112, 908
BseNI	ACTGG	6 cut(s)	148, 190, 478, 499, 703, 789
BseXI	GCAGC	3 cut(s)	579, 873, 933
Bsh1236I	CGCG	4 cut(s)	40, 56, 79, 204
BshFI	GGCC	3 cut(s)	419, 486, 710
BsiHKAI	GWGCWC	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	2 cut(s)	79, 590
BslI	CCNNNNNNNGG	5 cut(s)	73, 185, 473, 614, 718
BsmFI	GGGAC	2 cut(s)	79, 590
BsnI	GGCC	3 cut(s)	419, 486, 710
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	151, 334, 436, 598
BspACI	CCGC	6 cut(s)	38, 56, 67, 79, 202, 260
BspANI	GGCC	3 cut(s)	419, 486, 710
BspCNI	CTCAG	2 cut(s)	111, 909
BspEI	TCCGGA	1 cut(s)	662
BspFNI	CGCG	4 cut(s)	40, 56, 79, 204
BspLI	GGNNCC	1 cut(s)	164
BsrI	ACTGG	6 cut(s)	148, 190, 478, 499, 703, 789
BssECI	CCNNGG	3 cut(s)	112, 487, 571
BssMI	GATC	4 cut(s)	151, 334, 436, 598
BssT1I	CCWWGG	2 cut(s)	487, 571
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	560, 731
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	6 cut(s)	71, 75, 119, 206, 461, 505
BstDEI	CTNAG	5 cut(s)	98, 455, 563, 910, 917
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	2 cut(s)	659, 987
BstFNI	CGCG	4 cut(s)	40, 56, 79, 204
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	4 cut(s)	154, 337, 439, 601
BstMBI	GATC	4 cut(s)	151, 334, 436, 598
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 205, 504, 770, 858
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	4 cut(s)	40, 56, 79, 204
BstV1I	GCAGC	3 cut(s)	579, 873, 933
BstV2I	GAAGAC	2 cut(s)	252, 837
BstXI	CCANNNNNNTGG	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	419, 486, 710
BtsCI	GGATG	2 cut(s)	659, 987
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	7 cut(s)	141, 471, 556, 696, 736, 839, 914
Cac8I	GCNNGC	6 cut(s)	71, 75, 119, 206, 461, 505
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	163, 407, 665, 709
CseI	GACGC	2 cut(s)	62, 830
Csp6I	GTAC	4 cut(s)	82, 183, 192, 492
CviAII	CATG	3 cut(s)	159, 460, 622
CviQI	GTAC	4 cut(s)	82, 183, 192, 492
DdeI	CTNAG	5 cut(s)	98, 455, 563, 910, 917
DpnI	GATC	4 cut(s)	153, 336, 438, 600
DpnII	GATC	4 cut(s)	151, 334, 436, 598
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
Ecl136II	GAGCTC	1 cut(s)	738
Eco130I	CCWWGG	2 cut(s)	487, 571
Eco24I	GRGCYC	1 cut(s)	740
Eco47I	GGWCC	3 cut(s)	163, 407, 665
Eco53kI	GAGCTC	1 cut(s)	738
Eco57I	CTGAAG	4 cut(s)	597, 836, 849, 981
EcoICRI	GAGCTC	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	487, 571
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	2 cut(s)	487, 571
FaeI	CATG	3 cut(s)	162, 463, 625
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 356, 388
FaqI	GGGAC	2 cut(s)	79, 590
FatI	CATG	3 cut(s)	158, 459, 621
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	2 cut(s)	334, 436
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	261, 568, 862, 947
FokI	GGATG	2 cut(s)	646, 974
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	4 cut(s)	261, 568, 862, 947
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	261, 568, 862, 947
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	419, 486, 710
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	2 cut(s)	62, 830
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	162, 463, 625
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	2 cut(s)	762, 963
HinfI	GANTC	2 cut(s)	618, 628
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	4 cut(s)	264, 379, 799, 948
Hpy166II	GTNNAC	3 cut(s)	52, 627, 883
Hpy188I	TCNGA	1 cut(s)	816
Hpy188III	TCNNGA	4 cut(s)	615, 663, 884, 934
Hpy8I	GTNNAC	3 cut(s)	52, 627, 883
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	618, 700, 811, 1026
HpyCH4III	ACNGT	2 cut(s)	560, 731
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	2 cut(s)	890, 949
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 205, 504, 770, 858
HpyF3I	CTNAG	5 cut(s)	98, 455, 563, 910, 917
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	3 cut(s)	162, 463, 625
HspAI	GCGC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	662
Ksp22I	TGATCA	2 cut(s)	334, 436
Kzo9I	GATC	4 cut(s)	151, 334, 436, 598
LmnI	GCTCC	3 cut(s)	181, 735, 743
Lsp1109I	GCAGC	3 cut(s)	579, 873, 933
LweI	GCATC	4 cut(s)	163, 217, 877, 996
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	7 cut(s)	281, 290, 302, 513, 554, 636, 641
MalI	GATC	4 cut(s)	153, 336, 438, 600
MboI	GATC	4 cut(s)	151, 334, 436, 598
MboII	GAAGA	3 cut(s)	257, 603, 842
MhlI	GDGCHC	1 cut(s)	740
MluCI	AATT	5 cut(s)	7, 383, 518, 754, 846
MlyI	GAGTC	2 cut(s)	622, 627
MnlI	CCTC	7 cut(s)	107, 261, 313, 420, 569, 763, 822
MroI	TCCGGA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	899
MseI	TTAA	5 cut(s)	521, 536, 684, 714, 780
MslI	CAYNNNNRTG	1 cut(s)	701
MspA1I	CMGCKG	2 cut(s)	69, 946
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	4 cut(s)	40, 56, 79, 204
MwoI	GCNNNNNNNGC	5 cut(s)	114, 205, 504, 770, 858
NdeII	GATC	4 cut(s)	151, 334, 436, 598
NlaIII	CATG	3 cut(s)	162, 463, 625
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	4 cut(s)	302, 513, 554, 636
NspI	RCATGY	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	899
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	262, 569, 863, 948
PleI	GAGTC	2 cut(s)	622, 626
PpsI	GAGTC	2 cut(s)	622, 626
Ppu21I	YACGTR	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	4 cut(s)	163, 407, 665, 709
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	4 cut(s)	83, 184, 193, 493
RsaNI	GTAC	4 cut(s)	82, 183, 192, 492
RseI	CAYNNNNRTG	1 cut(s)	701
SacI	GAGCTC	1 cut(s)	740
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	5 cut(s)	521, 536, 684, 714, 780
SatI	GCNGC	4 cut(s)	261, 568, 862, 947
Sau3AI	GATC	4 cut(s)	151, 334, 436, 598
Sau96I	GGNCC	4 cut(s)	163, 407, 665, 709
SchI	GAGTC	2 cut(s)	622, 627
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	4 cut(s)	163, 217, 877, 996
SinI	GGWCC	3 cut(s)	163, 407, 665
SmiMI	CAYNNNNRTG	1 cut(s)	701
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	5 cut(s)	7, 383, 518, 754, 846
SsiI	CCGC	6 cut(s)	38, 56, 67, 79, 202, 260
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	2 cut(s)	487, 571
TaaI	ACNGT	2 cut(s)	560, 731
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	12, 51, 126
TasI	AATT	5 cut(s)	7, 383, 518, 754, 846
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	5 cut(s)	521, 536, 684, 714, 780
Tru9I	TTAA	5 cut(s)	521, 536, 684, 714, 780
TscAI	CASTG	7 cut(s)	148, 478, 563, 703, 736, 846, 921
TseFI	GTSAC	4 cut(s)	302, 513, 554, 636
TseI	GCWGC	3 cut(s)	567, 861, 946
Tsp45I	GTSAC	4 cut(s)	302, 513, 554, 636
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	7 cut(s)	148, 478, 563, 703, 736, 846, 921
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	3 cut(s)	163, 407, 665
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.