Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003331

Physical Location & Seq

Genomic Coordinates Forward (+)

56748893 .. 56751724

Gene Structure 2832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCCAAACGGTACTACTCTGTGTCCCTCAGCATAGGCAACCCAGGCAAGCGTTTCGACCTTGATATTGACACTGGTAGTGATCTCACATGGGTCCAATGTGATGCTCCCTGTACTGGCTGTACCAAGCCCCGCGAGCATCTTTACAAACCCAAAAACAACCTTGTCCAATGTGAAGACCCTCTTTGTGCGGCATTCAACTCACCGGCAAGTTACCCGTGTAACAACCCAAGTGACCAATGCGACTATGAGGTTGAATATGCTGATCAAGGTTCATCTCTGGGTGTGCTGGTCAAGGATTACTTTCCCCTGAAATTCACCAATGGCTCTCAACTTGGTCCTCGTTTGGCCTTTGGGTGTGGATATGATCAAAAACATTCTGGTCTAAGCATGCCCCCAACCACTGGAGTTCTTGGCCTTGGTACTGGCAAAGCAAGCATTGTGTCACAATTAAGTCGCTTGGGTTTAACTAGAAATGTGGTTGGTCACTGTCTAAGCAGCCAAGGAGGATTTCTATTCTTTGGGAATGATCTTGTCCCCTCTTCAGGAGTCATGTGGACTCCAATGTCACGTAACTCAAATCACTACTCATCCGGACCAGCAGAACTTGTCTTTAATGGAAAGCCCACTGGTGTGAAGGCCCTTAACTTGGTTTTTGACAGTGGGAGCTCCTACACTTACTTCAATTCCAAAGCTTATGAGGCATTAGTTAAACTGGTGAGAAACGATTTGAAAGGAAAGCCTCTGAAGGACGCAACTGAAGACAAATCACTGCCAATTTGCTGGAAAGGCAGCAAACCTTTCAAATCTGTTCACGATGCACAGAACTATTTCAAACCCTTAGCACTGAGCTTTACTAATGTCAAGAATGTTCAGCTGCATATATCACCTGAAGCTTATCTCATAGTTTCACAACATGGCAATGTGTGCTTGGGAATATTGAACGGCTCTGAAGTAGGACTGGAAAGTACGAACATCATCGGAGATATTACCTTGCTAGATAGAATTTTGGTATATGACAATGAAAACCAGCGAATTGGATGGGCTCCAGCAAATTGCAATAGGCTTCCCAAATCGGAATATTGTGGAGGTGTTTCCCAGCGTTATGTAGCCAATTTGGAAGAGTTTTGTCCTGCTTTTGCTTCTGATGATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

385

Amino Acids

41.95

Weight (kDa)

6.65

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	6 - 176	1.6e-47	Xylanase inhibitor N-terminal
Asp	PF00026	6 - 350	2.9e-17	Eukaryotic aspartyl protease
TAXi_C	PF14541	214 - 349	1.3e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44130 AT1G77480 AT1G77480
fragaria_vesca	FvH4_2g27390 FvH4_2g27390 FvH4_2g27390
malus_domestica	MD15G1345400.v1.1
prunus_persica	Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.7G031200_v2.0.a1
pyrus_communis	pycom15g30990
rosa_chinensis	RchiOBHm_Chr6g0296231
rosa_laevigata	RLG00000011715
rosa_roxburghii	Rroxscaffold_7G00171720 Rroxscaffold_7G00178340
rosa_rugosa	Rorug06G0259700.1 Rorug06G0259800.1
rosa_samantha	Rh6AG371900 Rh6BG379800 Rh6CG385200 Rh6DG372400
rosa_wichuraiana	Rw6G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	2 cut(s)	133, 191
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	314, 1005
AcuI	CTGAAG	5 cut(s)	528, 767, 780, 912, 972
AfaI	GTAC	5 cut(s)	14, 115, 124, 424, 970
AfiI	CCNNNNNNNGG	4 cut(s)	116, 404, 545, 649
AgsI	TTSAA	7 cut(s)	199, 257, 685, 733, 805, 835, 943
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	5 cut(s)	669, 695, 852, 877, 896
AluI	AGCT	5 cut(s)	669, 695, 852, 877, 896
Alw21I	GWGCWC	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	4 cut(s)	3, 348, 415, 639
ApeKI	GCWGC	3 cut(s)	498, 792, 877
ApoI	RAATTY	2 cut(s)	314, 1005
Asp700I	GAANNNNTTC	1 cut(s)	830
AspS9I	GGNCC	4 cut(s)	94, 338, 596, 640
AsuHPI	GGTGA	4 cut(s)	195, 310, 730, 879
AvaII	GGWCC	3 cut(s)	94, 338, 596
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	671, 1048
BbsI	GAAGAC	2 cut(s)	183, 768
Bbv12I	GWGCWC	1 cut(s)	671
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	510, 804, 864
BccI	CCATC	1 cut(s)	1035
BceAI	ACGGC	1 cut(s)	961
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	3 cut(s)	265, 367, 1150
BfaI	CTAG	2 cut(s)	471, 998
BisI	GCNGC	4 cut(s)	192, 499, 793, 878
BlsI	GCNGC	4 cut(s)	193, 500, 794, 879
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	94, 338, 596
BmgT120I	GGNCC	4 cut(s)	94, 338, 596, 640
BmiI	GGNNCC	2 cut(s)	95, 1047
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	94, 148, 808
BpiI	GAAGAC	2 cut(s)	183, 768
BpmI	CTGGAG	2 cut(s)	426, 1032
Bpu10I	CCTNAGC	2 cut(s)	29, 841
BsaAI	YACGTR	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	43, 418, 502
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 404, 545, 649
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	7 cut(s)	79, 121, 409, 430, 634, 720, 966
Bse3DI	GCAATG	1 cut(s)	928
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	43, 418, 502
BseGI	GGATG	2 cut(s)	590, 1046
BseLI	CCNNNNNNNGG	4 cut(s)	116, 404, 545, 649
BseMI	GCAATG	1 cut(s)	928
BseMII	CTCAG	2 cut(s)	43, 839
BseNI	ACTGG	7 cut(s)	79, 121, 409, 430, 634, 720, 966
BseXI	GCAGC	3 cut(s)	510, 804, 864
BseYI	CCCAGC	1 cut(s)	1098
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	5, 350, 417, 641
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	206, 594
BslFI	GGGAC	2 cut(s)	10, 521
BslI	CCNNNNNNNGG	4 cut(s)	116, 404, 545, 649
BsmFI	GGGAC	2 cut(s)	10, 521
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	5, 350, 417, 641
Bsp1286I	GDGCHC	2 cut(s)	671, 1048
Bsp13I	TCCGGA	1 cut(s)	593
Bsp143I	GATC	5 cut(s)	82, 265, 367, 529, 1150
BspACI	CCGC	2 cut(s)	133, 191
BspANI	GGCC	4 cut(s)	5, 350, 417, 641
BspCNI	CTCAG	2 cut(s)	42, 840
BspEI	TCCGGA	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	95, 1047
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	7 cut(s)	79, 121, 409, 430, 634, 720, 966
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	43, 418, 502
BssMI	GATC	5 cut(s)	82, 265, 367, 529, 1150
BssT1I	CCWWGG	2 cut(s)	418, 502
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	12, 491, 662
Bst6I	CTCTTC	2 cut(s)	547, 1116
BstAPI	GCANNNNNTGC	1 cut(s)	927
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	50, 137, 392, 436
BstDEI	CTNAG	5 cut(s)	29, 386, 494, 841, 848
BstF5I	GGATG	2 cut(s)	590, 1046
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	5 cut(s)	85, 268, 370, 532, 1153
BstMBI	GATC	5 cut(s)	82, 265, 367, 529, 1150
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 136, 435, 701, 789, 927
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	510, 804, 864
BstV2I	GAAGAC	2 cut(s)	183, 768
BstXI	CCANNNNNNTGG	2 cut(s)	783, 1037
BsuRI	GGCC	4 cut(s)	5, 350, 417, 641
BtsCI	GGATG	2 cut(s)	590, 1046
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	7 cut(s)	72, 402, 487, 627, 667, 770, 845
Cac8I	GCNNGC	4 cut(s)	50, 137, 392, 436
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	4 cut(s)	94, 338, 596, 640
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	5 cut(s)	13, 114, 123, 423, 969
CviAII	CATG	4 cut(s)	90, 391, 553, 917
CviQI	GTAC	5 cut(s)	13, 114, 123, 423, 969
DdeI	CTNAG	5 cut(s)	29, 386, 494, 841, 848
DpnI	GATC	5 cut(s)	84, 267, 369, 531, 1152
DpnII	GATC	5 cut(s)	82, 265, 367, 529, 1150
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	547, 1116
EarI	CTCTTC	2 cut(s)	547, 1116
Ecl136II	GAGCTC	1 cut(s)	669
Eco130I	CCWWGG	2 cut(s)	418, 502
Eco24I	GRGCYC	2 cut(s)	671, 1048
Eco47I	GGWCC	3 cut(s)	94, 338, 596
Eco53kI	GAGCTC	1 cut(s)	669
Eco57I	CTGAAG	5 cut(s)	528, 767, 780, 912, 972
EcoICRI	GAGCTC	1 cut(s)	669
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	418, 502
EcoT38I	GRGCYC	2 cut(s)	671, 1048
ErhI	CCWWGG	2 cut(s)	418, 502
FaeI	CATG	4 cut(s)	93, 394, 556, 920
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 287, 319
FaqI	GGGAC	2 cut(s)	10, 521
FatI	CATG	4 cut(s)	89, 390, 552, 916
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	3 cut(s)	265, 367, 1150
Fnu4HI	GCNGC	4 cut(s)	192, 499, 793, 878
FokI	GGATG	2 cut(s)	577, 1053
FriOI	GRGCYC	2 cut(s)	671, 1048
Fsp4HI	GCNGC	4 cut(s)	192, 499, 793, 878
FspBI	CTAG	2 cut(s)	471, 998
GluI	GCNGC	4 cut(s)	192, 499, 793, 878
GsaI	CCCAGC	1 cut(s)	1102
GsuI	CTGGAG	2 cut(s)	426, 1032
HaeIII	GGCC	4 cut(s)	5, 350, 417, 641
HapII	CCGG	2 cut(s)	206, 594
HgaI	GACGC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	93, 394, 556, 920
HindIII	AAGCTT	2 cut(s)	693, 894
HinfI	GANTC	2 cut(s)	549, 559
HpaII	CCGG	2 cut(s)	206, 594
HphI	GGTGA	4 cut(s)	195, 310, 730, 879
Hpy166II	GTNNAC	2 cut(s)	558, 814
Hpy188I	TCNGA	5 cut(s)	747, 952, 983, 1078, 1147
Hpy188III	TCNNGA	4 cut(s)	546, 594, 815, 865
Hpy8I	GTNNAC	2 cut(s)	558, 814
HpyAV	CCTTC	2 cut(s)	631, 742
HpyCH4III	ACNGT	3 cut(s)	12, 491, 662
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	821, 880, 1059
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 136, 435, 701, 789, 927
HpyF3I	CTNAG	5 cut(s)	29, 386, 494, 841, 848
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	93, 394, 556, 920
Kpn2I	TCCGGA	1 cut(s)	593
Ksp22I	TGATCA	3 cut(s)	265, 367, 1150
Kzo9I	GATC	5 cut(s)	82, 265, 367, 529, 1150
LmnI	GCTCC	4 cut(s)	112, 666, 674, 1051
Lsp1109I	GCAGC	3 cut(s)	510, 804, 864
LweI	GCATC	3 cut(s)	94, 148, 808
MaeI	CTAG	2 cut(s)	471, 998
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	7 cut(s)	212, 221, 233, 444, 485, 567, 572
MalI	GATC	5 cut(s)	84, 267, 369, 531, 1152
MboI	GATC	5 cut(s)	82, 265, 367, 529, 1150
MboII	GAAGA	4 cut(s)	188, 534, 773, 1133
MhlI	GDGCHC	2 cut(s)	671, 1048
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	314, 449, 685, 777, 1005, 1035, 1054, 1114
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	553, 558
MnlI	CCTC	9 cut(s)	38, 192, 244, 351, 500, 550, 694, 753, 1082
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	452, 467, 615, 645, 711
MslI	CAYNNNNRTG	2 cut(s)	632, 921
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	2 cut(s)	206, 594
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	6 cut(s)	45, 136, 435, 701, 789, 927
NdeII	GATC	5 cut(s)	82, 265, 367, 529, 1150
NlaIII	CATG	4 cut(s)	93, 394, 556, 920
NlaIV	GGNNCC	2 cut(s)	95, 1047
NmuCI	GTSAC	4 cut(s)	233, 444, 485, 567
NspI	RCATGY	1 cut(s)	394
OliI	CACNNNNGTG	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	394
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	193, 500, 794, 879
PleI	GAGTC	2 cut(s)	553, 557
PpsI	GAGTC	2 cut(s)	553, 557
Ppu21I	YACGTR	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	95, 1047
PspPI	GGNCC	4 cut(s)	94, 338, 596, 640
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	5 cut(s)	14, 115, 124, 424, 970
RsaNI	GTAC	5 cut(s)	13, 114, 123, 423, 969
RseI	CAYNNNNRTG	2 cut(s)	632, 921
SacI	GAGCTC	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	452, 467, 615, 645, 711
SatI	GCNGC	4 cut(s)	192, 499, 793, 878
Sau3AI	GATC	5 cut(s)	82, 265, 367, 529, 1150
Sau96I	GGNCC	4 cut(s)	94, 338, 596, 640
SchI	GAGTC	2 cut(s)	553, 558
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	671, 1048
SfaNI	GCATC	3 cut(s)	94, 148, 808
SinI	GGWCC	3 cut(s)	94, 338, 596
SmiMI	CAYNNNNRTG	2 cut(s)	632, 921
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	8 cut(s)	314, 449, 685, 777, 1005, 1035, 1054, 1114
SsiI	CCGC	2 cut(s)	133, 191
SspI	AATATT	2 cut(s)	939, 1082
SspMI	CTAG	2 cut(s)	471, 998
SstI	GAGCTC	1 cut(s)	671
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	2 cut(s)	418, 502
TaaI	ACNGT	3 cut(s)	12, 491, 662
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	57
TasI	AATT	8 cut(s)	314, 449, 685, 777, 1005, 1035, 1054, 1114
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	5 cut(s)	452, 467, 615, 645, 711
Tru9I	TTAA	5 cut(s)	452, 467, 615, 645, 711
TscAI	CASTG	7 cut(s)	79, 409, 494, 634, 667, 777, 852
TseFI	GTSAC	4 cut(s)	233, 444, 485, 567
TseI	GCWGC	3 cut(s)	498, 792, 877
Tsp45I	GTSAC	4 cut(s)	233, 444, 485, 567
TspDTI	ATGAA	2 cut(s)	264, 1038
TspRI	CASTG	7 cut(s)	79, 409, 494, 634, 667, 777, 852
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	3 cut(s)	94, 338, 596
XapI	RAATTY	2 cut(s)	314, 1005
XceI	RCATGY	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	2 cut(s)	471, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.