Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003331

Physical Location & Seq

Genomic Coordinates Forward (+)

57148455 .. 57151674

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG385200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCCAAACGGTGTGGATTGACATTGACGGCGTTTTTGGTTCTGGGTTTGTTTTTCTCTTGCTGTTTCTCGGAAACCAATCACCCGCAGACGAATAAGAAGTCGGCCCACTTGGACAGCTTTGGTTCTTCTGCCGTTTTCCCTCTTCACGGAAATGTCTATCCTCTTGGCTACTACTCTGTGTCCCTCAGCATAGGCAACCCAGGCAAGCATTTCGACCTTGATATTGACACTGGTAGTGATCTCACATGGGTCCAATGTGATGCTCCCTGTACTGGCTGTACCAAGCCCCGCGAGCATCTTTATAAACCCAAAAACAACCTTGTCCAATGTGAAGACCCTCTTTGTGCGGCATTTCACTCACCGGCTAGTTTCCCGTGTAACAACCCAAGTGACCAATGCGACTATGAGGTTGAATATGCTGATCAAGGTTCATCTCTGGGTGTGCTGGTCAAGGATTACTTTCCCCTGAAATTCACCAATGGCTCTCAACTTGGTCCTCGTCTGGCCTTTGGGTGTGGATATGATCAAAAACATTCTGGTCTAAGCATGCCCTCCACCACTGGAGTTCTTGGCCTTGGTACTGGCAAAGCAAGCATTGTGTCACAATTAAGTCGCTTGGGTTTAACTAGAAATGTGGTTGGTCACTGTCTAAGCAGCCAAGGAGGATTTCTATTCTTTGGGAATGATCTTGTCCCTTCTTCAGGAGTCATGTGGACTCCAATGTCACGTAACGTAAATCACTACTCATCCGGACCAGCAGAACTTGTCTTTAATGGAAAGCCCACTGGTGTGAAGGCCCTTAACTTCGTTTTTGACAGTGGGAGCTCATACACTTACTTCAATTCCAAGGCTTATGAGGCATTAGTTAAACTGGTGAGAAACGATTTGAAAGGAAAGCCTCTGAAGGACGCAACTGAAGACAAATCACTGCCAATTTGCTGGAAAGGCAGCAAACCTTTTAAATCTGTTCACGATGCGCAGAACTATTTCAAACCCTTAGCACTGAGCTTTACTAATGTCAAGAATGTTCAGCTGCATATATCACCTGAAGCTTATCTCATAGTTTCACAACATGGCAATGTGTGCTTGGGAATATTGAACGGCTCTGAAGTAGGACTGGAAAGTACGAACATCATCGGAGATATTACTTTGCTAGATAAAATTTTGATATATGACAATGAAAACCAGCGAATTGGATGGGCTCCAGCAAATTGCAATAGGCTTCCCAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

412

Amino Acids

44.74

Weight (kDa)

7.85

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	59 - 229	3.9e-47	Xylanase inhibitor N-terminal
Asp	PF00026	59 - 403	2.4e-16	Eukaryotic aspartyl protease
TAXi_C	PF14541	267 - 402	2.1e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44130 AT1G77480 AT1G77480
fragaria_vesca	FvH4_2g27390 FvH4_2g27390 FvH4_2g27390
malus_domestica	MD15G1345400.v1.1
prunus_persica	Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.7G031200_v2.0.a1
pyrus_communis	pycom15g30990
rosa_chinensis	RchiOBHm_Chr6g0296231
rosa_laevigata	RLG00000011715
rosa_roxburghii	Rroxscaffold_7G00171720 Rroxscaffold_7G00178340
rosa_rugosa	Rorug06G0259700.1 Rorug06G0259800.1
rosa_samantha	Rh6AG371900 Rh6BG379800 Rh6CG385200 Rh6DG372400
rosa_wichuraiana	Rw6G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AasI	GACNNNNNNGTC	1 cut(s)	724
Acc16I	TGCGCA	1 cut(s)	981
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	752
AciI	CCGC	3 cut(s)	86, 292, 350
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	473, 1164
AcuI	CTGAAG	5 cut(s)	687, 926, 939, 1071, 1131
AfaI	GTAC	4 cut(s)	274, 283, 583, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	149, 275, 704
AgsI	TTSAA	5 cut(s)	416, 844, 892, 994, 1102
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	5 cut(s)	120, 828, 1011, 1036, 1055
AluI	AGCT	5 cut(s)	120, 828, 1011, 1036, 1055
Alw21I	GWGCWC	1 cut(s)	830
Aor13HI	TCCGGA	1 cut(s)	752
AoxI	GGCC	5 cut(s)	3, 105, 507, 574, 798
ApeKI	GCWGC	3 cut(s)	657, 951, 1036
ApoI	RAATTY	2 cut(s)	473, 1164
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 86, 118
Asp700I	GAANNNNTTC	1 cut(s)	989
AspLEI	GCGC	1 cut(s)	982
AspS9I	GGNCC	5 cut(s)	106, 253, 497, 755, 799
AsuHPI	GGTGA	5 cut(s)	74, 354, 469, 889, 1038
AvaII	GGWCC	3 cut(s)	253, 497, 755
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	830, 1207
BbsI	GAAGAC	2 cut(s)	342, 927
Bbv12I	GWGCWC	1 cut(s)	830
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	669, 963, 1023
BccI	CCATC	1 cut(s)	1194
BceAI	ACGGC	3 cut(s)	45, 119, 1120
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	204
BclI	TGATCA	2 cut(s)	424, 526
BfaI	CTAG	3 cut(s)	369, 630, 1157
BisI	GCNGC	4 cut(s)	351, 658, 952, 1037
BlsI	GCNGC	4 cut(s)	352, 659, 953, 1038
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	3 cut(s)	253, 497, 755
BmgT120I	GGNCC	5 cut(s)	106, 253, 497, 755, 799
BmiI	GGNNCC	2 cut(s)	254, 1206
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	253, 307, 967
BpiI	GAAGAC	2 cut(s)	342, 927
BpmI	CTGGAG	2 cut(s)	585, 1191
Bpu10I	CCTNAGC	2 cut(s)	188, 1000
BsaAI	YACGTR	1 cut(s)	731
BsaJI	CCNNGG	4 cut(s)	202, 577, 661, 849
BsaWI	WCCGGW	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 275, 704
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	7 cut(s)	238, 280, 568, 589, 793, 879, 1125
Bse3DI	GCAATG	1 cut(s)	1087
BseAI	TCCGGA	1 cut(s)	752
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	4 cut(s)	202, 577, 661, 849
BseGI	GGATG	2 cut(s)	749, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	149, 275, 704
BseMI	GCAATG	1 cut(s)	1087
BseMII	CTCAG	2 cut(s)	202, 998
BseNI	ACTGG	7 cut(s)	238, 280, 568, 589, 793, 879, 1125
BseXI	GCAGC	3 cut(s)	669, 963, 1023
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	5, 107, 509, 576, 800
BsiHKAI	GWGCWC	1 cut(s)	830
BsiSI	CCGG	2 cut(s)	365, 753
BslFI	GGGAC	2 cut(s)	169, 680
BslI	CCNNNNNNNGG	3 cut(s)	149, 275, 704
BsmFI	GGGAC	2 cut(s)	169, 680
BsnI	GGCC	5 cut(s)	5, 107, 509, 576, 800
Bsp1286I	GDGCHC	2 cut(s)	830, 1207
Bsp13I	TCCGGA	1 cut(s)	752
Bsp143I	GATC	4 cut(s)	241, 424, 526, 688
BspACI	CCGC	3 cut(s)	86, 292, 350
BspANI	GGCC	5 cut(s)	5, 107, 509, 576, 800
BspCNI	CTCAG	2 cut(s)	201, 999
BspEI	TCCGGA	1 cut(s)	752
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	254, 1206
BsrDI	GCAATG	1 cut(s)	1087
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	7 cut(s)	238, 280, 568, 589, 793, 879, 1125
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	4 cut(s)	202, 577, 661, 849
BssMI	GATC	4 cut(s)	241, 424, 526, 688
BssT1I	CCWWGG	3 cut(s)	577, 661, 849
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	12, 650, 821
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	1086
BstBAI	YACGTR	1 cut(s)	731
BstC8I	GCNNGC	4 cut(s)	209, 296, 551, 595
BstDEI	CTNAG	5 cut(s)	188, 545, 653, 1000, 1007
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	749, 1205
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	982
BstKTI	GATC	4 cut(s)	244, 427, 529, 691
BstMBI	GATC	4 cut(s)	241, 424, 526, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 295, 594, 860, 948, 1086
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	669, 963, 1023
BstV2I	GAAGAC	2 cut(s)	342, 927
BstXI	CCANNNNNNTGG	2 cut(s)	942, 1196
BsuRI	GGCC	5 cut(s)	5, 107, 509, 576, 800
BtsCI	GGATG	2 cut(s)	749, 1205
BtsI	GCAGTG	1 cut(s)	929
BtsIMutI	CAGTG	7 cut(s)	231, 561, 646, 786, 826, 929, 1004
Cac8I	GCNNGC	4 cut(s)	209, 296, 551, 595
CfoI	GCGC	1 cut(s)	982
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	5 cut(s)	106, 253, 497, 755, 799
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	4 cut(s)	273, 282, 582, 1128
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	4 cut(s)	249, 550, 712, 1076
CviQI	GTAC	4 cut(s)	273, 282, 582, 1128
DdeI	CTNAG	5 cut(s)	188, 545, 653, 1000, 1007
DpnI	GATC	4 cut(s)	243, 426, 528, 690
DpnII	GATC	4 cut(s)	241, 424, 526, 688
DraI	TTTAAA	1 cut(s)	964
DrdI	GACNNNNNNGTC	1 cut(s)	724
DseDI	GACNNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	828
Eco130I	CCWWGG	3 cut(s)	577, 661, 849
Eco24I	GRGCYC	2 cut(s)	830, 1207
Eco47I	GGWCC	3 cut(s)	253, 497, 755
Eco53kI	GAGCTC	1 cut(s)	828
Eco57I	CTGAAG	5 cut(s)	687, 926, 939, 1071, 1131
EcoICRI	GAGCTC	1 cut(s)	828
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	3 cut(s)	577, 661, 849
EcoT38I	GRGCYC	2 cut(s)	830, 1207
ErhI	CCWWGG	3 cut(s)	577, 661, 849
FaeI	CATG	4 cut(s)	252, 553, 715, 1079
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 446, 478
FaqI	GGGAC	2 cut(s)	169, 680
FatI	CATG	4 cut(s)	248, 549, 711, 1075
FauI	CCCGC	2 cut(s)	93, 299
FbaI	TGATCA	2 cut(s)	424, 526
Fnu4HI	GCNGC	4 cut(s)	351, 658, 952, 1037
FokI	GGATG	2 cut(s)	736, 1212
FriOI	GRGCYC	2 cut(s)	830, 1207
Fsp4HI	GCNGC	4 cut(s)	351, 658, 952, 1037
FspBI	CTAG	3 cut(s)	369, 630, 1157
FspI	TGCGCA	1 cut(s)	981
GlaI	GCGC	1 cut(s)	981
GluI	GCNGC	4 cut(s)	351, 658, 952, 1037
GsuI	CTGGAG	2 cut(s)	585, 1191
HaeIII	GGCC	5 cut(s)	5, 107, 509, 576, 800
HapII	CCGG	2 cut(s)	365, 753
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	1 cut(s)	982
Hin1II	CATG	4 cut(s)	252, 553, 715, 1079
Hin6I	GCGC	1 cut(s)	980
HinP1I	GCGC	1 cut(s)	980
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	2 cut(s)	708, 718
HpaII	CCGG	2 cut(s)	365, 753
HphI	GGTGA	5 cut(s)	74, 354, 469, 889, 1038
Hpy166II	GTNNAC	2 cut(s)	717, 973
Hpy188I	TCNGA	4 cut(s)	73, 906, 1111, 1142
Hpy188III	TCNNGA	5 cut(s)	705, 753, 974, 1024, 1236
Hpy8I	GTNNAC	2 cut(s)	717, 973
HpyAV	CCTTC	3 cut(s)	708, 790, 901
HpyCH4III	ACNGT	3 cut(s)	12, 650, 821
HpyCH4IV	ACGT	2 cut(s)	730, 735
HpyCH4V	TGCA	2 cut(s)	1039, 1218
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 295, 594, 860, 948, 1086
HpyF3I	CTNAG	5 cut(s)	188, 545, 653, 1000, 1007
HpySE526I	ACGT	2 cut(s)	730, 735
Hsp92II	CATG	4 cut(s)	252, 553, 715, 1079
HspAI	GCGC	1 cut(s)	980
Kpn2I	TCCGGA	1 cut(s)	752
Ksp22I	TGATCA	2 cut(s)	424, 526
Kzo9I	GATC	4 cut(s)	241, 424, 526, 688
LmnI	GCTCC	3 cut(s)	271, 825, 1210
Lsp1109I	GCAGC	3 cut(s)	669, 963, 1023
LweI	GCATC	3 cut(s)	253, 307, 967
MaeI	CTAG	3 cut(s)	369, 630, 1157
MaeII	ACGT	2 cut(s)	730, 735
MaeIII	GTNAC	6 cut(s)	380, 392, 603, 644, 726, 731
MalI	GATC	4 cut(s)	243, 426, 528, 690
MboI	GATC	4 cut(s)	241, 424, 526, 688
MboII	GAAGA	5 cut(s)	120, 137, 347, 693, 932
MhlI	GDGCHC	2 cut(s)	830, 1207
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	473, 608, 844, 936, 1164, 1194, 1213
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	712, 717
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	989
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	611, 626, 774, 804, 870, 963
MslI	CAYNNNNRTG	3 cut(s)	153, 791, 1080
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1036
MspI	CCGG	2 cut(s)	365, 753
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	204, 295, 594, 860, 948, 1086
NdeII	GATC	4 cut(s)	241, 424, 526, 688
NlaIII	CATG	4 cut(s)	252, 553, 715, 1079
NlaIV	GGNNCC	2 cut(s)	254, 1206
NmuCI	GTSAC	4 cut(s)	392, 603, 644, 726
NsbI	TGCGCA	1 cut(s)	981
NspI	RCATGY	1 cut(s)	553
OliI	CACNNNNGTG	1 cut(s)	791
PaeI	GCATGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	989
PkrI	GCNGC	4 cut(s)	352, 659, 953, 1038
PleI	GAGTC	2 cut(s)	712, 716
PpsI	GAGTC	2 cut(s)	712, 716
Ppu21I	YACGTR	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	254, 1206
PspPI	GGNCC	5 cut(s)	106, 253, 497, 755, 799
PvuII	CAGCTG	1 cut(s)	1036
RsaI	GTAC	4 cut(s)	274, 283, 583, 1129
RsaNI	GTAC	4 cut(s)	273, 282, 582, 1128
RseI	CAYNNNNRTG	3 cut(s)	153, 791, 1080
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	6 cut(s)	611, 626, 774, 804, 870, 963
SatI	GCNGC	4 cut(s)	351, 658, 952, 1037
Sau3AI	GATC	4 cut(s)	241, 424, 526, 688
Sau96I	GGNCC	5 cut(s)	106, 253, 497, 755, 799
SchI	GAGTC	2 cut(s)	712, 717
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	830, 1207
SfaNI	GCATC	3 cut(s)	253, 307, 967
SinI	GGWCC	3 cut(s)	253, 497, 755
SmiMI	CAYNNNNRTG	3 cut(s)	153, 791, 1080
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	7 cut(s)	473, 608, 844, 936, 1164, 1194, 1213
SsiI	CCGC	3 cut(s)	86, 292, 350
SspI	AATATT	1 cut(s)	1098
SspMI	CTAG	3 cut(s)	369, 630, 1157
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	577, 661, 849
TaaI	ACNGT	3 cut(s)	12, 650, 821
TaiI	ACGT	2 cut(s)	733, 738
TaqI	TCGA	1 cut(s)	216
TasI	AATT	7 cut(s)	473, 608, 844, 936, 1164, 1194, 1213
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	1 cut(s)	353
Tru1I	TTAA	6 cut(s)	611, 626, 774, 804, 870, 963
Tru9I	TTAA	6 cut(s)	611, 626, 774, 804, 870, 963
TscAI	CASTG	7 cut(s)	238, 568, 653, 793, 826, 936, 1011
TseFI	GTSAC	4 cut(s)	392, 603, 644, 726
TseI	GCWGC	3 cut(s)	657, 951, 1036
Tsp45I	GTSAC	4 cut(s)	392, 603, 644, 726
TspDTI	ATGAA	2 cut(s)	423, 1197
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	7 cut(s)	238, 568, 653, 793, 826, 936, 1011
VpaK11BI	GGWCC	3 cut(s)	253, 497, 755
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	2 cut(s)	473, 1164
XceI	RCATGY	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	989
XspI	CTAG	3 cut(s)	369, 630, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.