FvH4_2g27390

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
21749889 .. 21753225
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27390.t1

Sequence Viewer

Length: 1341 bp
ATGGGCAGACAGTGGAGATTAACATTGACGGCGTTTTTGGTTCTGGGTTTGTCTGCAACGTTCTGTTTCTCCGCAACCAATCAGCCCCAGACCAATAAGAAGTCGACCCAATTGCATAGCTTTGGTTCTTCTGCCGTTTTTCCTCTTCAGGGAAATGTTTATCCTCTTGGGTACTACTCTGTGTCCCTCAGCATAGGCAACCCAGGCAAGCGTTTTGACCTTGATATTGACACTGGAAGTGATCTCACATGGGTCCAATGTGATGCTCCCTGTACCGGCTGTACGAAGCCCCGCGAGCATCTTTATAAACCCAAAAACAACCTTGTCCAATGTGAAGACCCTCTTTGTTCAGCATTTCACTTACCGGCAAGTTACCCGTGCAACACCCCAAGTGACCAATGTGACTATGAGGTTGAATACGCTGATCAAGGTTCATCTCTGGGTGTGCTGGTCAAGGATTACTTTCCCCTGAAATTCACCAATGGCTCTCAACTTGGGCCTCGTTTGGCCTTTGGGTGTGGATATGATCAAAAACATTCTGGTCTAAGCATGCCTTCCACCACTGGAGTTCTTGGCCTTGGTAGTGGCCAAGCCAGCATTGTTTCACAATTAAGTCGCCTGGGTTTAACTAGAAACATAGTTGGTCACTGTCTAAGCGGGCAAGGAGGAGGATATCTATTCTTTGGGAATGATCTTGTCCCTTCTTCAGGAGTCATGTGGAGTCCAATGTCACACAATTCATTGGAAAATCACTACTCATCTGGACCAGCAGAACTTGTCTTTAATGGAAAGCCCACTGGTGTGAAGAGCCTTAACTTGGTTTTTGACAGTGGGAGCTCCTACACTTACTTCAATTCCAAAGCTTACGAGGCATTAGTTAAACTGTTGAGAAACGATTTGAAAGGAAAGCCACTGAAGGACGCACCTGACGACAAATCCCTGCCAATTTGCTGGAAAGGCAGCAAACCATTCAAATCTGTTCGTGACGTACAGAACTATTTCAAACCCTTGGCACTGAGCTTTACAAATGCCAAGAATGTTCAACTGCAAATATCACCTGAAGCTTATCTCATAGTTTCACACCATGGCAATGTCTGCTTGGGGATATTGAATGGCTCAGAAGTAGGACTGGGAAGTATGAATGTCATAGGAGATATTACTTTGCTAGATAAAGTTTTGATATATGACAATGAAAACCAGCGAATTGGATGGGGTCCTGCAAATTGCAATAGGCTTCCCAATGTAGATCGTGAATATTGTGAAGGTGTTTCCCGGCATTTTGTAGCCAGTTTGGGCATACTGGAAGAGCATTGTCCTGCTTTTGCTTCTGATGATCAGTAA

Protein Analysis

447

Amino Acids

48.47

Weight (kDa)

6.59

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 59 - 230 4.7e-47 Xylanase inhibitor N-terminal
Asp PF00026 59 - 405 2.3e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 269 - 404 2.5e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 294
AciI CCGC 3 cut(s) 72, 292, 657
AclI AACGTT 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 4 cut(s) 131, 690, 935, 1080
AfaI GTAC 4 cut(s) 173, 274, 283, 990
AfiI CCNNNNNNNGG 4 cut(s) 149, 275, 707, 817
AgsI TTSAA 7 cut(s) 416, 853, 901, 973, 1003, 1043, 1111
AjnI CCWGG 2 cut(s) 202, 618
AleI CACNNNNGTG 1 cut(s) 800
AluBI AGCT 5 cut(s) 120, 837, 863, 1020, 1064
AluI AGCT 5 cut(s) 120, 837, 863, 1020, 1064
Alw21I GWGCWC 1 cut(s) 839
AoxI GGCC 4 cut(s) 497, 507, 574, 586
ApeKI GCWGC 1 cut(s) 960
ApoI RAATTY 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
Asp700I GAANNNNTTC 1 cut(s) 998
AspS9I GGNCC 4 cut(s) 253, 497, 764, 1214
AsuC2I CCSGG 1 cut(s) 1273
AsuHPI GGTGA 2 cut(s) 469, 1047
AvaII GGWCC 3 cut(s) 253, 764, 1214
BalI TGGCCA 1 cut(s) 588
BanII GRGCYC 1 cut(s) 839
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 839
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 972
BccI CCATC 1 cut(s) 1203
BceAI ACGGC 2 cut(s) 45, 119
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 2 cut(s) 204, 620
BclI TGATCA 3 cut(s) 424, 526, 1333
BcnI CCSGG 1 cut(s) 1273
BfaI CTAG 2 cut(s) 630, 1166
BisI GCNGC 1 cut(s) 961
BlsI GCNGC 1 cut(s) 962
Bme1390I CCNGG 3 cut(s) 204, 620, 1273
Bme18I GGWCC 3 cut(s) 253, 764, 1214
BmgT120I GGNCC 4 cut(s) 253, 497, 764, 1214
BmiI GGNNCC 2 cut(s) 254, 1215
BmrFI CCNGG 3 cut(s) 204, 620, 1273
BmrI ACTGGG 1 cut(s) 1139
BmsI GCATC 2 cut(s) 253, 307
BmuI ACTGGG 1 cut(s) 1139
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 1273
BsaJI CCNNGG 5 cut(s) 202, 577, 619, 1008, 1084
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 275, 707, 817
Bse118I RCCGGY 2 cut(s) 275, 364
Bse1I ACTGG 6 cut(s) 238, 568, 802, 1134, 1287, 1305
Bse3DI GCAATG 1 cut(s) 1096
BseBI CCWGG 2 cut(s) 204, 620
BseDI CCNNGG 5 cut(s) 202, 577, 619, 1008, 1084
BseGI GGATG 1 cut(s) 1214
BseLI CCNNNNNNNGG 4 cut(s) 149, 275, 707, 817
BseMI GCAATG 1 cut(s) 1096
BseMII CTCAG 3 cut(s) 202, 1007, 1131
BseNI ACTGG 6 cut(s) 238, 568, 802, 1134, 1287, 1305
BseRI GAGGAG 1 cut(s) 681
BseXI GCAGC 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 499, 509, 576, 588
BsiHKAI GWGCWC 1 cut(s) 839
BsiSI CCGG 3 cut(s) 276, 365, 1273
BslFI GGGAC 2 cut(s) 169, 683
BslI CCNNNNNNNGG 4 cut(s) 149, 275, 707, 817
BsmFI GGGAC 2 cut(s) 169, 683
BsnI GGCC 4 cut(s) 499, 509, 576, 588
Bsp1286I GDGCHC 1 cut(s) 839
Bsp143I GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 3 cut(s) 72, 292, 657
BspANI GGCC 4 cut(s) 499, 509, 576, 588
BspCNI CTCAG 3 cut(s) 201, 1008, 1130
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 254, 1215
BspQI GCTCTTC 2 cut(s) 800, 1299
BsrDI GCAATG 1 cut(s) 1096
BsrFI RCCGGY 2 cut(s) 275, 364
BsrI ACTGG 6 cut(s) 238, 568, 802, 1134, 1287, 1305
BssAI RCCGGY 2 cut(s) 275, 364
BssECI CCNNGG 5 cut(s) 202, 577, 619, 1008, 1084
BssMI GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
BssT1I CCWWGG 3 cut(s) 577, 1008, 1084
Bst2UI CCWGG 2 cut(s) 204, 620
Bst4CI ACNGT 4 cut(s) 12, 650, 830, 885
Bst6I CTCTTC 3 cut(s) 150, 800, 1299
BstAPI GCANNNNNTGC 1 cut(s) 1095
BstC8I GCNNGC 5 cut(s) 209, 296, 551, 595, 659
BstDEI CTNAG 5 cut(s) 188, 545, 653, 1016, 1117
BstDSI CCRYGG 1 cut(s) 1084
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 1 cut(s) 1214
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 6 cut(s) 244, 427, 529, 694, 1249, 1336
BstMBI GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
BstMWI GCNNNNNNNGC 6 cut(s) 204, 295, 594, 869, 957, 1095
BstNI CCWGG 2 cut(s) 204, 620
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 3 cut(s) 202, 618, 1271
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 972
BstV2I GAAGAC 1 cut(s) 342
BstXI CCANNNNNNTGG 2 cut(s) 951, 1205
BsuRI GGCC 4 cut(s) 499, 509, 576, 588
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 1 cut(s) 1214
BtsIMutI CAGTG 8 cut(s) 17, 231, 561, 646, 795, 835, 911, 1013
Cac8I GCNNGC 5 cut(s) 209, 296, 551, 595, 659
Cfr10I RCCGGY 2 cut(s) 275, 364
Cfr13I GGNCC 4 cut(s) 253, 497, 764, 1214
CseI GACGC 1 cut(s) 929
Csp6I GTAC 4 cut(s) 172, 273, 282, 989
CviAII CATG 4 cut(s) 249, 550, 715, 1085
CviQI GTAC 4 cut(s) 172, 273, 282, 989
DdeI CTNAG 5 cut(s) 188, 545, 653, 1016, 1117
DpnI GATC 6 cut(s) 243, 426, 528, 693, 1248, 1335
DpnII GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 3 cut(s) 150, 800, 1299
EarI CTCTTC 3 cut(s) 150, 800, 1299
Ecl136II GAGCTC 1 cut(s) 837
Eco130I CCWWGG 3 cut(s) 577, 1008, 1084
Eco24I GRGCYC 1 cut(s) 839
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 3 cut(s) 253, 764, 1214
Eco53kI GAGCTC 1 cut(s) 837
Eco57I CTGAAG 4 cut(s) 131, 690, 935, 1080
EcoICRI GAGCTC 1 cut(s) 837
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 202, 618
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 3 cut(s) 577, 1008, 1084
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 3 cut(s) 577, 1008, 1084
FaeI CATG 4 cut(s) 252, 553, 718, 1088
FalI AAGNNNNNCTT 6 cut(s) 327, 359, 446, 478, 538, 570
FaqI GGGAC 2 cut(s) 169, 683
FatI CATG 4 cut(s) 248, 549, 714, 1084
FauI CCCGC 2 cut(s) 299, 650
FbaI TGATCA 3 cut(s) 424, 526, 1333
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 961
FokI GGATG 1 cut(s) 1221
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 1 cut(s) 961
FspBI CTAG 2 cut(s) 630, 1166
GluI GCNGC 1 cut(s) 961
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 4 cut(s) 499, 509, 576, 588
HapII CCGG 3 cut(s) 276, 365, 1273
HgaI GACGC 1 cut(s) 929
Hin1II CATG 4 cut(s) 252, 553, 718, 1088
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 2 cut(s) 861, 1062
HinfI GANTC 2 cut(s) 711, 721
HpaII CCGG 3 cut(s) 276, 365, 1273
HphI GGTGA 2 cut(s) 469, 1047
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 1120, 1330
Hpy188III TCNNGA 4 cut(s) 708, 762, 983, 1250
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 4 cut(s) 564, 711, 910, 1256
HpyCH4III ACNGT 4 cut(s) 12, 650, 830, 885
HpyCH4IV ACGT 2 cut(s) 59, 987
HpyCH4V TGCA 6 cut(s) 56, 115, 381, 1048, 1220, 1227
HpyF10VI GCNNNNNNNGC 6 cut(s) 204, 295, 594, 869, 957, 1095
HpyF3I CTNAG 5 cut(s) 188, 545, 653, 1016, 1117
HpySE526I ACGT 2 cut(s) 59, 987
Hsp92II CATG 4 cut(s) 252, 553, 718, 1088
Ksp22I TGATCA 3 cut(s) 424, 526, 1333
Kzo9I GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
LguI GCTCTTC 2 cut(s) 800, 1299
LmnI GCTCC 3 cut(s) 271, 834, 842
Lsp1109I GCAGC 1 cut(s) 972
LweI GCATC 2 cut(s) 253, 307
MaeI CTAG 2 cut(s) 630, 1166
MaeII ACGT 2 cut(s) 59, 987
MaeIII GTNAC 6 cut(s) 371, 392, 401, 644, 729, 983
MalI GATC 6 cut(s) 243, 426, 528, 693, 1248, 1335
MboI GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
MboII GAAGA 6 cut(s) 120, 137, 347, 696, 817, 1316
MfeI CAATTG 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 839
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 8 cut(s) 110, 473, 608, 736, 853, 945, 1203, 1222
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 2 cut(s) 720, 730
MnlI CCTC 9 cut(s) 153, 174, 197, 351, 403, 510, 659, 662, 862
Mox20I TGGCCA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 998
MscI TGGCCA 1 cut(s) 588
MseI TTAA 6 cut(s) 20, 611, 626, 783, 813, 879
MslI CAYNNNNRTG 2 cut(s) 800, 1089
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 3 cut(s) 276, 365, 1273
MspR9I CCNGG 3 cut(s) 204, 620, 1273
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 2 cut(s) 204, 620
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 6 cut(s) 204, 295, 594, 869, 957, 1095
NciI CCSGG 1 cut(s) 1273
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
NlaIII CATG 4 cut(s) 252, 553, 718, 1088
NlaIV GGNNCC 2 cut(s) 254, 1215
NmuCI GTSAC 5 cut(s) 392, 401, 644, 729, 983
NspI RCATGY 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 800
PaeI GCATGC 1 cut(s) 553
PciSI GCTCTTC 2 cut(s) 800, 1299
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 998
PkrI GCNGC 1 cut(s) 962
PleI GAGTC 2 cut(s) 719, 729
PpsI GAGTC 2 cut(s) 719, 729
PpuMI RGGWCCY 1 cut(s) 1214
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 839
Psp1406I AACGTT 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 1214
Psp6I CCWGG 2 cut(s) 202, 618
PspGI CCWGG 2 cut(s) 202, 618
PspN4I GGNNCC 2 cut(s) 254, 1215
PspPI GGNCC 4 cut(s) 253, 497, 764, 1214
PspPPI RGGWCCY 1 cut(s) 1214
RsaI GTAC 4 cut(s) 173, 274, 283, 990
RsaNI GTAC 4 cut(s) 172, 273, 282, 989
RseI CAYNNNNRTG 2 cut(s) 800, 1089
SacI GAGCTC 1 cut(s) 839
SalI GTCGAC 1 cut(s) 103
SapI GCTCTTC 2 cut(s) 800, 1299
SaqAI TTAA 6 cut(s) 20, 611, 626, 783, 813, 879
SatI GCNGC 1 cut(s) 961
Sau3AI GATC 6 cut(s) 241, 424, 526, 691, 1246, 1333
Sau96I GGNCC 4 cut(s) 253, 497, 764, 1214
SchI GAGTC 2 cut(s) 720, 730
ScrFI CCNGG 3 cut(s) 204, 620, 1273
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 2 cut(s) 253, 307
SinI GGWCC 3 cut(s) 253, 764, 1214
SmiMI CAYNNNNRTG 2 cut(s) 800, 1089
SphI GCATGC 1 cut(s) 553
Sse9I AATT 8 cut(s) 110, 473, 608, 736, 853, 945, 1203, 1222
SsiI CCGC 3 cut(s) 72, 292, 657
SspI AATATT 1 cut(s) 1256
SspMI CTAG 2 cut(s) 630, 1166
SstI GAGCTC 1 cut(s) 839
StyD4I CCNGG 3 cut(s) 202, 618, 1271
StyI CCWWGG 3 cut(s) 577, 1008, 1084
TaaI ACNGT 4 cut(s) 12, 650, 830, 885
TaiI ACGT 2 cut(s) 62, 990
TaqI TCGA 1 cut(s) 104
TasI AATT 8 cut(s) 110, 473, 608, 736, 853, 945, 1203, 1222
Tru1I TTAA 6 cut(s) 20, 611, 626, 783, 813, 879
Tru9I TTAA 6 cut(s) 20, 611, 626, 783, 813, 879
TscAI CASTG 8 cut(s) 17, 238, 568, 653, 802, 835, 918, 1020
TseFI GTSAC 5 cut(s) 392, 401, 644, 729, 983
TseI GCWGC 1 cut(s) 960
Tsp45I GTSAC 5 cut(s) 392, 401, 644, 729, 983
TspDTI ATGAA 4 cut(s) 423, 729, 1154, 1206
TspRI CASTG 8 cut(s) 17, 238, 568, 653, 802, 835, 918, 1020
VpaK11BI GGWCC 3 cut(s) 253, 764, 1214
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 2 cut(s) 630, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.