Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003331

Physical Location & Seq

Genomic Coordinates Reverse (-)

40475439 .. 40477069

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1345400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATTGTGTGGAGCTTCGTTACACTTATTTCAATTCACAAGCTTACAAGGCACTCATTAATCTGGTGCGAAATGATTTAAATGGGAAGCCTCTGAAGTATGCAACTGAGGATCAATCCCTCCCAATTTGCTGGAAAGGTAGCAAACCTTTCAAATCTGTTGGCGACGCAAAGAACTTTTTCAAGCCCTTGGCACTGAGCTTTACTAAAGCTAAGAATGTTCAGCTGCAGTTATCCCCCGATGCTTATCTTATAGTTACAAAACATGGCAATGTATGCTTGGGGATTTTGAATGGCACTGAAGTGGGACTGGGAAGTATGAATATCATTGGAGATATTACTATGCAAGATAAAATGGTGATATATGATAACGAGAACCAGAGAATTGGATGGGCTCCTACAAATTGCAAAAGACTTTCAAAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

9.3

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	7 - 132	6.4e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44130 AT1G77480 AT1G77480
fragaria_vesca	FvH4_2g27390 FvH4_2g27390 FvH4_2g27390
malus_domestica	MD15G1345400.v1.1
prunus_persica	Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.1G493500_v2.0.a1 Prupe.7G031200_v2.0.a1
pyrus_communis	pycom15g30990
rosa_chinensis	RchiOBHm_Chr6g0296231
rosa_laevigata	RLG00000011715
rosa_roxburghii	Rroxscaffold_7G00171720 Rroxscaffold_7G00178340
rosa_rugosa	Rorug06G0259700.1 Rorug06G0259800.1
rosa_samantha	Rh6AG371900 Rh6BG379800 Rh6CG385200 Rh6DG372400
rosa_wichuraiana	Rw6G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	116, 321
AgsI	TTSAA	5 cut(s)	34, 154, 184, 292, 420
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	5 cut(s)	16, 44, 201, 212, 226
AluI	AGCT	5 cut(s)	16, 44, 201, 212, 226
AlwI	GGATC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	226
AseI	ATTAAT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	99, 188
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	100, 189
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	108, 197, 213
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 276
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	213
BstXI	CCANNNNNNTGG	2 cut(s)	132, 386
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	194, 297
CseI	GACGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	8 cut(s)	16, 44, 91, 187, 201, 212, 226, 395
CviKI_1	RGCY	8 cut(s)	16, 44, 91, 187, 201, 212, 226, 395
DdeI	CTNAG	3 cut(s)	108, 197, 213
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraI	TTTAAA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	116, 321
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	269
FaiI	YATR	8 cut(s)	102, 254, 267, 277, 320, 344, 364, 366
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	42
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	104, 229, 346, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 276
HpyF3I	CTNAG	3 cut(s)	108, 197, 213
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	13, 400
LpnPI	CCDG	4 cut(s)	50, 118, 296, 392
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	20, 256
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	5 cut(s)	4, 34, 126, 384, 403
MnlI	CCTC	3 cut(s)	102, 103, 131
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	2 cut(s)	60, 80
MslI	CAYNNNNRTG	2 cut(s)	270, 302
MspA1I	CMGCKG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	50, 276
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	396
OliI	CACNNNNGTG	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	270, 302
SaqAI	TTAA	2 cut(s)	60, 80
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	7 cut(s)	18, 46, 142, 151, 203, 214, 228
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	227
SmiI	ATTTAAAT	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	270, 302
Sse9I	AATT	5 cut(s)	4, 34, 126, 384, 403
StyI	CCWWGG	1 cut(s)	189
SwaI	ATTTAAAT	1 cut(s)	81
TasI	AATT	5 cut(s)	4, 34, 126, 384, 403
Tru1I	TTAA	2 cut(s)	60, 80
Tru9I	TTAA	2 cut(s)	60, 80
TscAI	CASTG	2 cut(s)	201, 304
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	17, 335
TspRI	CASTG	2 cut(s)	201, 304
VspI	ATTAAT	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.