AT1G77490

Belongs to the peroxidase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29117500 .. 29121093
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77490.1

Sequence Viewer

Length: 1281 bp
ATGTCTGTTTCTCTCTCCGCCGCCTCTCACTTACTCTGTTCCTCCACCAGAGTCTCTCTTTCCCCCGCCGTCACCTCTTCGTCCTCGTCCCCTGTCGTTGCTCTTTCTTCCTCTACATCGCCACATTCTCTTGGAAGCGTCGCATCTTCTTCTCTGTTTCCTCACTCCTCCTTCGTGCTTCAGAAAAAACATCCGATCAATGGGACGAGCACGAGGATGATTTCACCAAAATGTGCCGCTTCTGATGCAGCTCAATTGATAAGCGCTAAAGAAGATATCAAAGTTCTTCTCCGGACTAAGTTTTGCCATCCCATCTTGGTTAGATTGGGGTGGCACGATGCTGGTACTTATAACAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGAAGTCTTAGGTTTGAGGCTGAGCTTAAGCATGCTGCAAATGCTGGTCTGCTTAATGCTTTAAAGCTCATTCAGCCTCTCAAAGACAAGTATCCTAACATCTCTTATGCGGACTTATTCCAGTTAGCTAGTGCCACAGCAATAGAGGAGGCTGGTGGTCCTGATATCCCGATGAAATATGGGAGAGTTGATGTTGTAGCACCTGAACAGTGTCCAGAAGAAGGAAGACTCCCTGATGCTGGACCTCCTTCACCAGCTGATCATTTGAGAGATGTTTTCTACAGAATGGGACTTGATGACAAGGAAATAGTTGCCTTGTCTGGTGCACATACCTTAGGGAGAGCCAGACCAGACCGTAGTGGTTGGGGAAAACCTGAGACAAAGTACACGAAAACTGGACCTGGAGAAGCAGGAGGACAGTCATGGACAGTGAAATGGCTCAAGTTCGACAACTCTTATTTCAAGGATATCAAAGAAAAGAGGGACGACGATCTTCTGGTGTTACCCACTGATGCGGCGCTATTTGAAGATCCTTCATTCAAGAACTATGCAGAGAAGTATGCTGAAGATGTGGCTGCATTTTTCAAGGACTACGCTGAAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAGAAGGAGCTTTCGGATTCGATGAAAAAGAAGATAAGAGCAGAGTATGAAGCAATTGGAGGAAGCCCAGATAAGCCATTACCCACAAATTACTTCCTCAACATCATAATTGCCATTGGCGTTTTGGTCCTCTTGTCCACTCTCTTTGGTGGTAATAACAACTCCGATTTCTCTGGTTTCTAA

Protein Analysis

426

Amino Acids

46.09

Weight (kDa)

6.81

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 94 - 321 1.1e-46 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 6 cut(s) 18, 21, 66, 237, 503, 908
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 2 cut(s) 917, 1025
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 1 cut(s) 1025
AcuI CTGAAG 3 cut(s) 164, 978, 1011
AfaI GTAC 2 cut(s) 346, 779
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 5 cut(s) 200, 380, 614, 632, 1040
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 5 cut(s) 856, 920, 934, 979, 1055
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 9 cut(s) 251, 389, 418, 460, 521, 650, 1006, 1079, 1108
AluI AGCT 9 cut(s) 251, 389, 418, 460, 521, 650, 1006, 1079, 1108
Alw21I GWGCWC 2 cut(s) 212, 721
Alw26I GTCTC 2 cut(s) 58, 764
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 2 cut(s) 917, 1025
Ama87I CYCGRG 1 cut(s) 1037
Aor13HI TCCGGA 1 cut(s) 291
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 1 cut(s) 371
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 248, 428, 968, 1079
ApoI RAATTY 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 2 cut(s) 266, 913
AspS9I GGNCC 4 cut(s) 551, 635, 791, 1225
AsuHPI GGTGA 3 cut(s) 64, 216, 636
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 4 cut(s) 551, 635, 791, 1225
AxyI CCTNAGG 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 373
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 2 cut(s) 212, 721
BbvI GCAGC 4 cut(s) 260, 415, 955, 1066
BccI CCATC 2 cut(s) 315, 320
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 795
BciVI GTATCC 1 cut(s) 495
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 58, 764
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 2 cut(s) 267, 914
BfrI CTTAAG 1 cut(s) 419
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 7 cut(s) 21, 237, 249, 429, 909, 969, 1080
BlpI GCTNAGC 2 cut(s) 414, 1007
BlsI GCNGC 7 cut(s) 22, 238, 250, 430, 910, 970, 1081
Bme1390I CCNGG 1 cut(s) 795
Bme18I GGWCC 4 cut(s) 551, 635, 791, 1225
BmeT110I CYCGRG 1 cut(s) 1037
BmgT120I GGNCC 4 cut(s) 551, 635, 791, 1225
BmrFI CCNGG 1 cut(s) 795
BmsI GCATC 5 cut(s) 152, 235, 328, 619, 895
BpiI GAAGAC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 816
Bpu1102I GCTNAGC 2 cut(s) 414, 1007
BpuEI CTTGAG 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 1038
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 380, 614, 632, 1040
Bse1I ACTGG 2 cut(s) 514, 793
Bse21I CCTNAGG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 1 cut(s) 1038
BseGI GGATG 3 cut(s) 190, 222, 307
BseLI CCNNNNNNNGG 5 cut(s) 200, 380, 614, 632, 1040
BseMII CTCAG 3 cut(s) 368, 405, 759
BseNI ACTGG 2 cut(s) 514, 793
BseRI GAGGAG 3 cut(s) 157, 380, 554
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 4 cut(s) 260, 415, 955, 1066
BshFI GGCC 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 212, 721
BsiHKCI CYCGRG 1 cut(s) 1037
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 4 cut(s) 73, 217, 696, 890
BslI CCNNNNNNNGG 5 cut(s) 200, 380, 614, 632, 1040
BsmAI GTCTC 2 cut(s) 58, 764
BsmFI GGGAC 4 cut(s) 73, 217, 696, 890
BsnI GGCC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 212, 721
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 5 cut(s) 195, 652, 883, 922, 1030
Bsp1720I GCTNAGC 2 cut(s) 414, 1007
BspACI CCGC 6 cut(s) 18, 21, 66, 237, 503, 908
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 3 cut(s) 369, 406, 760
BspEI TCCGGA 1 cut(s) 291
BspPI GGATC 2 cut(s) 917, 1025
BspTI CTTAAG 1 cut(s) 419
BsrI ACTGG 2 cut(s) 514, 793
BssECI CCNNGG 1 cut(s) 1038
BssMI GATC 5 cut(s) 195, 652, 883, 922, 1030
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 4 cut(s) 603, 749, 813, 823
Bst6I CTCTTC 1 cut(s) 82
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 7 cut(s) 297, 377, 401, 414, 727, 768, 1007
BstF5I GGATG 3 cut(s) 190, 222, 307
BstH2I RGCGCY 2 cut(s) 267, 914
BstHHI GCGC 2 cut(s) 266, 913
BstKTI GATC 5 cut(s) 198, 655, 886, 925, 1033
BstMAI GTCTC 2 cut(s) 58, 764
BstMBI GATC 5 cut(s) 195, 652, 883, 922, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 245, 434, 466
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 793
BstSFI CTRYAG 1 cut(s) 673
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 4 cut(s) 260, 415, 955, 1066
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
Bsu36I CCTNAGG 1 cut(s) 727
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 190, 222, 307
BtsIMutI CAGTG 4 cut(s) 374, 608, 828, 900
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 2 cut(s) 266, 913
Cfr13I GGNCC 4 cut(s) 551, 635, 791, 1225
CseI GACGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 345, 778
CspCI CAANNNNNGTGG 2 cut(s) 1225, 1260
CviAII CATG 3 cut(s) 425, 816, 998
CviQI GTAC 2 cut(s) 345, 778
DdeI CTNAG 7 cut(s) 297, 377, 401, 414, 727, 768, 1007
DpnI GATC 5 cut(s) 197, 654, 885, 924, 1032
DpnII GATC 5 cut(s) 195, 652, 883, 922, 1030
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 7
Eco32I GATATC 3 cut(s) 277, 559, 862
Eco47I GGWCC 4 cut(s) 551, 635, 791, 1225
Eco47III AGCGCT 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 164, 978, 1011
Eco81I CCTNAGG 1 cut(s) 727
Eco88I CYCGRG 1 cut(s) 1037
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 3 cut(s) 277, 559, 862
FaeI CATG 3 cut(s) 428, 819, 1001
FaqI GGGAC 4 cut(s) 73, 217, 696, 890
FatI CATG 3 cut(s) 424, 815, 997
FauI CCCGC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 7 cut(s) 21, 237, 249, 429, 909, 969, 1080
FokI GGATG 3 cut(s) 177, 229, 294
Fsp4HI GCNGC 7 cut(s) 21, 237, 249, 429, 909, 969, 1080
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 265, 912
GluI GCNGC 7 cut(s) 21, 237, 249, 429, 909, 969, 1080
GsuI CTGGAG 1 cut(s) 816
HaeII RGCGCY 2 cut(s) 267, 914
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 127
HhaI GCGC 2 cut(s) 266, 913
Hin1II CATG 3 cut(s) 428, 819, 1001
Hin6I GCGC 2 cut(s) 264, 911
HinP1I GCGC 2 cut(s) 264, 911
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 3 cut(s) 51, 621, 1115
HpaII CCGG 1 cut(s) 292
HphI GGTGA 3 cut(s) 64, 216, 636
Hpy166II GTNNAC 3 cut(s) 719, 780, 1236
Hpy188I TCNGA 5 cut(s) 183, 195, 244, 1114, 1264
Hpy188III TCNNGA 7 cut(s) 292, 554, 562, 608, 934, 1037, 1064
Hpy8I GTNNAC 3 cut(s) 719, 780, 1236
Hpy99I CGWCG 2 cut(s) 143, 884
HpyAV CCTTC 5 cut(s) 181, 608, 651, 936, 1096
HpyCH4III ACNGT 4 cut(s) 603, 749, 813, 823
HpyCH4IV ACGT 1 cut(s) 1059
HpyCH4V TGCA 7 cut(s) 248, 431, 719, 944, 971, 1022, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 434, 466
HpyF3I CTNAG 7 cut(s) 297, 377, 401, 414, 727, 768, 1007
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 3 cut(s) 428, 819, 1001
HspAI GCGC 2 cut(s) 264, 911
Kpn2I TCCGGA 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 5 cut(s) 195, 652, 883, 922, 1030
LmnI GCTCC 2 cut(s) 386, 1105
Lsp1109I GCAGC 4 cut(s) 260, 415, 955, 1066
LweI GCATC 5 cut(s) 152, 235, 328, 619, 895
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 2 cut(s) 70, 894
MalI GATC 5 cut(s) 197, 654, 885, 924, 1032
MboI GATC 5 cut(s) 195, 652, 883, 922, 1030
MfeI CAATTG 2 cut(s) 254, 1152
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 212, 721
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 5 cut(s) 254, 1025, 1152, 1186, 1206
MluNI TGGCCA 1 cut(s) 373
MlyI GAGTC 2 cut(s) 60, 615
Mox20I TGGCCA 1 cut(s) 373
MroI TCCGGA 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 1059
MscI TGGCCA 1 cut(s) 373
MseI TTAA 3 cut(s) 420, 447, 455
MslI CAYNNNNRTG 2 cut(s) 215, 229
Msp20I TGGCCA 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 650
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 795
MunI CAATTG 2 cut(s) 254, 1152
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 3 cut(s) 245, 434, 466
NdeII GATC 5 cut(s) 195, 652, 883, 922, 1030
NlaIII CATG 3 cut(s) 428, 819, 1001
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 1 cut(s) 1115
PkrI GCNGC 7 cut(s) 22, 238, 250, 430, 910, 970, 1081
PleI GAGTC 2 cut(s) 59, 615
PpsI GAGTC 2 cut(s) 59, 615
PsiI TTATAA 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspPI GGNCC 4 cut(s) 551, 635, 791, 1225
PsuI RGATCY 1 cut(s) 922
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 2 cut(s) 346, 779
RsaNI GTAC 2 cut(s) 345, 778
RseI CAYNNNNRTG 2 cut(s) 215, 229
SaqAI TTAA 3 cut(s) 420, 447, 455
SatI GCNGC 7 cut(s) 21, 237, 249, 429, 909, 969, 1080
Sau3AI GATC 5 cut(s) 195, 652, 883, 922, 1030
Sau96I GGNCC 4 cut(s) 551, 635, 791, 1225
SchI GAGTC 2 cut(s) 60, 615
ScrFI CCNGG 1 cut(s) 795
SduI GDGCHC 2 cut(s) 212, 721
SfaNI GCATC 5 cut(s) 152, 235, 328, 619, 895
SfcI CTRYAG 1 cut(s) 673
SinI GGWCC 4 cut(s) 551, 635, 791, 1225
SmiMI CAYNNNNRTG 2 cut(s) 215, 229
SmlI CTYRAG 2 cut(s) 419, 833
SmoI CTYRAG 2 cut(s) 419, 833
SphI GCATGC 1 cut(s) 428
Sse9I AATT 5 cut(s) 254, 1025, 1152, 1186, 1206
SsiI CCGC 6 cut(s) 18, 21, 66, 237, 503, 908
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 793
TaaI ACNGT 4 cut(s) 603, 749, 813, 823
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 2 cut(s) 840, 1118
TasI AATT 5 cut(s) 254, 1025, 1152, 1186, 1206
TatI WGTACW 1 cut(s) 777
TauI GCSGC 3 cut(s) 23, 239, 911
TfiI GAWTC 1 cut(s) 1115
Tru1I TTAA 3 cut(s) 420, 447, 455
Tru9I TTAA 3 cut(s) 420, 447, 455
TscAI CASTG 4 cut(s) 381, 608, 828, 907
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 248, 428, 968, 1079
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 581, 918, 1136, 1161
TspRI CASTG 4 cut(s) 381, 608, 828, 907
Vha464I CTTAAG 1 cut(s) 419
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 4 cut(s) 551, 635, 791, 1225
XapI RAATTY 1 cut(s) 1025
XceI RCATGY 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 1219
XmnI GAANNNNTTC 1 cut(s) 1059
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.