Rmu_sc0000486.1_g000008

Belongs to the peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000486.1
Physical Location & Seq
Reverse (-)
19598 .. 22461
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000486.1_g000008.1.cds

Sequence Viewer

Length: 1104 bp
atggcctccgtcgctctcggcggcgccgccgctgctacctctactcgctgcctcctcccctccgccagagcctccctctctctgtctcgctcttctccttcgtctgtcaaatgccgaggcctcggctcttctccgctcatctctcacctcttcgtcagccgcaaagcctcgccgatggcatgctcctccagccgcggcttcgccgccgctccgaaatgcgcggcttccgatcccgagcagctcaagcttgcgaaggaggacatcaaggagctcctcaagactaagttctgccatccaattctggttcggctgggatggcacgattctggaacttacaacaagaacattgaggagtggccgcagagaggtggagctaatgggagcttgaggtttgagattgagcttaagcacgccgctaatgcaggtcttgtgaatgctttgaagcttattcagcctatcaaagacaagtactctggtgtcacatacgcagacttgttccaattggctagtgctagcgctgtggaggatgctgggggcccaaagattcctatgaagtatgggagagttgatgtttcagcaccagagcagtgcccagaagaaggaaggcttcctgatgccggtcccacttcacctgctgatcatctacgtgaggtgttctacagaatggggttaaatgacaaggaaatagttgcattatcaggggcacacactctggggaggtccagacctgaacgcagtggttggggcaagccggagacaaagtatacgaaagaagggccaggtgcaccaggaggacagtcttggacagcacaatggttgaagtttgataattcctacttcaaggatatcaaggaaaaaagggatgaagatctactagtgttgccaactgatgctgctctttttgaagacccatcattcaaggtatttgctgagaagtatgctgaagatcaagaagccttcttcaaggactatgctgaagctcatgctaaactcagcaatttaggagccaaatttgatcctccagagggaattgtgatcgatgatggtgcacaacctgtaccggaaaagtttgtggcagctaaatactcatctggcaaggactag

Protein Analysis

367

Amino Acids

39.62

Weight (kDa)

7.6

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 640
Acc36I ACCTGC 2 cut(s) 413, 640
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 2 cut(s) 136, 209
AccI GTMKAC 1 cut(s) 764
AccII CGCG 2 cut(s) 195, 221
AclWI GGATC 2 cut(s) 224, 1010
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 1010
AcuI CTGAAG 2 cut(s) 963, 996
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 470, 1059
AfeI AGCGCT 1 cut(s) 517
AfiI CCNNNNNNNGG 4 cut(s) 365, 599, 617, 1025
AflII CTTAAG 1 cut(s) 404
AgsI TTSAA 6 cut(s) 442, 820, 841, 905, 919, 964
AhlI ACTAGT 1 cut(s) 874
AjnI CCWGG 2 cut(s) 778, 787
AluBI AGCT 9 cut(s) 241, 247, 271, 374, 384, 403, 445, 980, 1079
AluI AGCT 9 cut(s) 241, 247, 271, 374, 384, 403, 445, 980, 1079
Alw21I GWGCWC 3 cut(s) 273, 787, 1051
Alw26I GTCTC 2 cut(s) 90, 749
Alw44I GTGCAC 2 cut(s) 783, 1047
AlwI GGATC 2 cut(s) 224, 1010
Ama87I CYCGRG 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 517
AoxI GGCC 5 cut(s) 3, 118, 356, 535, 776
ApaI GGGCCC 1 cut(s) 539
ApaLI GTGCAC 2 cut(s) 783, 1047
ApeKI GCWGC 5 cut(s) 32, 48, 238, 893, 1076
ApoI RAATTY 1 cut(s) 1010
AspLEI GCGC 3 cut(s) 26, 221, 518
AspS9I GGNCC 5 cut(s) 535, 536, 620, 720, 776
AsuHPI GGTGA 2 cut(s) 137, 621
AsuNHI GCTAGC 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 620, 720
BaeGI GKGCMC 5 cut(s) 539, 593, 706, 787, 1051
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 2 cut(s) 273, 539
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 3 cut(s) 273, 787, 1051
BbvI GCAGC 5 cut(s) 19, 35, 250, 880, 1088
BccI CCATC 5 cut(s) 169, 300, 309, 919, 1037
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BciT130I CCWGG 2 cut(s) 780, 789
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 2 cut(s) 90, 749
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 4 cut(s) 507, 513, 875, 1102
BfmI CTRYAG 1 cut(s) 658
BfoI RGCGCY 2 cut(s) 27, 519
BfrI CTTAAG 1 cut(s) 404
BfuAI ACCTGC 2 cut(s) 413, 640
BglII AGATCT 1 cut(s) 868
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 2 cut(s) 780, 789
Bme18I GGWCC 2 cut(s) 620, 720
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 5 cut(s) 535, 536, 620, 720, 776
BmiI GGNNCC 5 cut(s) 25, 536, 537, 622, 1006
BmrFI CCNGG 2 cut(s) 780, 789
BmsI GCATC 3 cut(s) 517, 604, 880
BmtI GCTAGC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 912
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpmI CTGGAG 2 cut(s) 172, 1005
BpuEI CTTGAG 3 cut(s) 227, 260, 406
Bsa29I ATCGAT 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 115, 121, 193
BsaWI WCCGGW 1 cut(s) 1060
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 599, 617, 1025
Bse118I RCCGGY 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 780, 789
BseCI ATCGAT 1 cut(s) 1038
BseDI CCNNGG 3 cut(s) 115, 121, 193
BseGI GGATG 4 cut(s) 292, 320, 532, 868
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 4 cut(s) 365, 599, 617, 1025
BseMII CTCAG 2 cut(s) 921, 1006
BseRI GAGGAG 4 cut(s) 44, 175, 263, 365
BseSI GKGCMC 5 cut(s) 539, 593, 706, 787, 1051
BseXI GCAGC 5 cut(s) 19, 35, 250, 880, 1088
BseYI CCCAGC 2 cut(s) 310, 530
Bsh1236I CGCG 2 cut(s) 195, 221
BshFI GGCC 5 cut(s) 5, 120, 358, 537, 778
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 1038
BsiHKAI GWGCWC 3 cut(s) 273, 787, 1051
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 618, 752, 1061
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 4 cut(s) 365, 599, 617, 1025
BsmAI GTCTC 2 cut(s) 90, 749
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 5 cut(s) 5, 120, 358, 537, 778
BsoBI CYCGRG 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 6 cut(s) 273, 539, 593, 706, 787, 1051
Bsp143I GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
BspANI GGCC 5 cut(s) 5, 120, 358, 537, 778
BspCNI CTCAG 2 cut(s) 922, 1005
BspDI ATCGAT 1 cut(s) 1038
BspFNI CGCG 2 cut(s) 195, 221
BspLI GGNNCC 5 cut(s) 25, 536, 537, 622, 1006
BspMI ACCTGC 2 cut(s) 413, 640
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 2 cut(s) 224, 1010
BspQI GCTCTTC 2 cut(s) 97, 133
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 404
BsrBI CCGCTC 2 cut(s) 136, 209
BsrFI RCCGGY 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 115, 121, 193
BssMI GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
BssNAI GTATAC 1 cut(s) 765
BssNI GRCGYC 1 cut(s) 24
Bst1107I GTATAC 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 780, 789
Bst4CI ACNGT 1 cut(s) 798
Bst6I CTCTTC 3 cut(s) 97, 133, 155
BstACI GRCGYC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 5 cut(s) 181, 249, 411, 514, 749
BstDEI CTNAG 3 cut(s) 282, 930, 992
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 4 cut(s) 292, 320, 532, 868
BstFNI CGCG 2 cut(s) 195, 221
BstH2I RGCGCY 2 cut(s) 27, 519
BstHHI GCGC 3 cut(s) 26, 221, 518
BstKTI GATC 6 cut(s) 232, 640, 871, 949, 1018, 1038
BstMAI GTCTC 2 cut(s) 90, 749
BstMBI GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
BstMWI GCNNNNNNNGC 7 cut(s) 11, 32, 189, 244, 316, 419, 451
BstNI CCWGG 2 cut(s) 780, 789
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 778, 787
BstSFI CTRYAG 1 cut(s) 658
BstSLI GKGCMC 5 cut(s) 539, 593, 706, 787, 1051
BstUI CGCG 2 cut(s) 195, 221
BstV1I GCAGC 5 cut(s) 19, 35, 250, 880, 1088
BstV2I GAAGAC 1 cut(s) 912
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 765
Bsu15I ATCGAT 1 cut(s) 1038
BsuRI GGCC 5 cut(s) 5, 120, 358, 537, 778
BsuTUI ATCGAT 1 cut(s) 1038
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 4 cut(s) 292, 320, 532, 868
BtsI GCAGTG 2 cut(s) 593, 742
BtsIMutI CAGTG 2 cut(s) 593, 742
BveI ACCTGC 2 cut(s) 413, 640
Cac8I GCNNGC 5 cut(s) 181, 249, 411, 514, 749
CfoI GCGC 3 cut(s) 26, 221, 518
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 5 cut(s) 535, 536, 620, 720, 776
Cfr42I CCGCGG 1 cut(s) 196
ClaI ATCGAT 1 cut(s) 1038
Csp6I GTAC 2 cut(s) 469, 1058
CviAII CATG 2 cut(s) 180, 983
CviQI GTAC 2 cut(s) 469, 1058
DdeI CTNAG 3 cut(s) 282, 930, 992
DinI GGCGCC 1 cut(s) 25
DpnI GATC 6 cut(s) 231, 639, 870, 948, 1017, 1037
DpnII GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 3 cut(s) 97, 133, 155
EarI CTCTTC 3 cut(s) 97, 133, 155
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 2 cut(s) 273, 539
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 2 cut(s) 620, 720
Eco47III AGCGCT 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 963, 996
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 778, 787
EcoRV GATATC 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 273, 539
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
FaeI CATG 2 cut(s) 183, 986
FaiI YATR 8 cut(s) 181, 484, 551, 558, 765, 939, 972, 984
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 606
FatI CATG 2 cut(s) 179, 982
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 764
FokI GGATG 4 cut(s) 279, 327, 539, 875
FriOI GRGCYC 2 cut(s) 273, 539
FspBI CTAG 4 cut(s) 507, 513, 875, 1102
GlaI GCGC 3 cut(s) 25, 220, 517
GsaI CCCAGC 2 cut(s) 314, 534
GsuI CTGGAG 2 cut(s) 172, 1005
HaeII RGCGCY 2 cut(s) 27, 519
HaeIII GGCC 5 cut(s) 5, 120, 358, 537, 778
HapII CCGG 3 cut(s) 618, 752, 1061
HhaI GCGC 3 cut(s) 26, 221, 518
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 183, 986
Hin6I GCGC 3 cut(s) 24, 219, 516
HinP1I GCGC 3 cut(s) 24, 219, 516
HindIII AAGCTT 2 cut(s) 245, 443
HinfI GANTC 2 cut(s) 323, 544
HpaII CCGG 3 cut(s) 618, 752, 1061
HphI GGTGA 2 cut(s) 137, 621
Hpy166II GTNNAC 3 cut(s) 765, 785, 1049
Hpy188I TCNGA 2 cut(s) 213, 229
Hpy188III TCNNGA 7 cut(s) 233, 277, 327, 611, 723, 950, 1022
Hpy8I GTNNAC 3 cut(s) 765, 785, 1049
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 6 cut(s) 108, 247, 593, 597, 767, 967
HpyCH4III ACNGT 1 cut(s) 798
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 4 cut(s) 422, 692, 785, 1049
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 32, 189, 244, 316, 419, 451
HpyF3I CTNAG 3 cut(s) 282, 930, 992
HpySE526I ACGT 1 cut(s) 646
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 183, 986
HspAI GCGC 3 cut(s) 24, 219, 516
KasI GGCGCC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 637
KspI CCGCGG 1 cut(s) 196
Kzo9I GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
LguI GCTCTTC 2 cut(s) 97, 133
LmnI GCTCC 7 cut(s) 188, 214, 268, 276, 371, 381, 1004
Lsp1109I GCAGC 5 cut(s) 19, 35, 250, 880, 1088
LweI GCATC 3 cut(s) 517, 604, 880
MaeI CTAG 4 cut(s) 507, 513, 875, 1102
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 478
MalI GATC 6 cut(s) 231, 639, 870, 948, 1017, 1037
MbiI CCGCTC 2 cut(s) 136, 209
MboI GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
MboII GAAGA 8 cut(s) 84, 120, 142, 608, 878, 917, 952, 956
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 6 cut(s) 273, 539, 593, 706, 787, 1051
MluCI AATT 6 cut(s) 297, 500, 829, 997, 1010, 1029
Mly113I GGCGCC 1 cut(s) 24
MseI TTAA 2 cut(s) 405, 671
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 2 cut(s) 32, 195
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 3 cut(s) 618, 752, 1061
MspR9I CCNGG 2 cut(s) 780, 789
MunI CAATTG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 2 cut(s) 780, 789
MvnI CGCG 2 cut(s) 195, 221
MwoI GCNNNNNNNGC 7 cut(s) 11, 32, 189, 244, 316, 419, 451
NarI GGCGCC 1 cut(s) 24
NdeII GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 2 cut(s) 183, 986
NlaIV GGNNCC 5 cut(s) 25, 536, 537, 622, 1006
NmeAIII GCCGAG 2 cut(s) 102, 140
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 640
PceI AGGCCT 1 cut(s) 120
PciSI GCTCTTC 2 cut(s) 97, 133
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 323, 544
PluTI GGCGCC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 647
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 778, 787
PspFI CCCAGC 2 cut(s) 310, 530
PspGI CCWGG 2 cut(s) 778, 787
PspN4I GGNNCC 5 cut(s) 25, 536, 537, 622, 1006
PspOMI GGGCCC 1 cut(s) 535
PspPI GGNCC 5 cut(s) 535, 536, 620, 720, 776
PsuI RGATCY 1 cut(s) 868
RsaI GTAC 2 cut(s) 470, 1059
RsaNI GTAC 2 cut(s) 469, 1058
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 273
SacII CCGCGG 1 cut(s) 196
SapI GCTCTTC 2 cut(s) 97, 133
SaqAI TTAA 2 cut(s) 405, 671
Sau3AI GATC 6 cut(s) 229, 637, 868, 946, 1015, 1035
Sau96I GGNCC 5 cut(s) 535, 536, 620, 720, 776
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 2 cut(s) 780, 789
SduI GDGCHC 6 cut(s) 273, 539, 593, 706, 787, 1051
SfaNI GCATC 3 cut(s) 517, 604, 880
SfcI CTRYAG 1 cut(s) 658
SfoI GGCGCC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 196
SgrBI CCGCGG 1 cut(s) 196
SinI GGWCC 2 cut(s) 620, 720
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 4 cut(s) 242, 275, 385, 404
SmoI CTYRAG 4 cut(s) 242, 275, 385, 404
SpeI ACTAGT 1 cut(s) 874
SphI GCATGC 1 cut(s) 183
Sse9I AATT 6 cut(s) 297, 500, 829, 997, 1010, 1029
SseBI AGGCCT 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 4 cut(s) 507, 513, 875, 1102
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 778, 787
TaaI ACNGT 1 cut(s) 798
TaiI ACGT 1 cut(s) 649
TaqI TCGA 1 cut(s) 1038
TasI AATT 6 cut(s) 297, 500, 829, 997, 1010, 1029
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 2 cut(s) 323, 544
Tru1I TTAA 2 cut(s) 405, 671
Tru9I TTAA 2 cut(s) 405, 671
TscAI CASTG 2 cut(s) 593, 742
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 5 cut(s) 32, 48, 238, 893, 1076
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 566, 879
TspRI CASTG 2 cut(s) 593, 742
Vha464I CTTAAG 1 cut(s) 404
VneI GTGCAC 2 cut(s) 783, 1047
VpaK11BI GGWCC 2 cut(s) 620, 720
XapI RAATTY 1 cut(s) 1010
XceI RCATGY 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 764
XspI CTAG 4 cut(s) 507, 513, 875, 1102
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.