Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005692

Physical Location & Seq

Genomic Coordinates Forward (+)

40636804 .. 40641196

Gene Structure 4393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGGAAGATACACACTCAGTTTCTACGCTCATAGATTCTACAACCTCCAAGATACACCAGCTTCAGAAGGCATTTGCTGAACTTGAGGGTCACCGAGCGGTAACCCTGAACTTGAAGTGGAAAGAACTTGAAGAGCACTTCCATGGGCTTGAGAAGTCCTTAAAGAGGCGTTTTCATGAGCTGGAAGGACAAGAAAAGGAGTTTGAAACTAGGACAGTGGAAGCGCAAAGAATGCTAGAAAAGCGGCAAGCAGCTGTTGTCGCCAAGGAAGAAGCTCAACTGGAAACTCTTCAAGAGAAGAGAGATGCTGCCATATATGCCATCACTAATGCTCGAGAGAAGCAAAGGAAGGTATCGACTGAGGAGTCTTCTGTTGTCACTGATGACGGCCGAGGTGGGTCACCTACTGTTGAAGAGAAACCACCAGATGTGATGGTTTCTGATAGTAACTTGGTAGAAGTGACAAGTCCTGAAAATGGGAGCATAGAGGGGATGTCCTATCCCCAGTTAGTGAACTTTTGTGAACAGATGGACTCAGAAGGCCTCCACAAATTTATATCAGATAACCGAAAGAACCTTGCTGCAATAAGGGAGGAGATTCCACTTGCATTTAGAGCTGCGGCCAACCCTGCCCTCTTTGTTTTGGAATCTCTGGAAGACTTTTACCGCCTGGAAGGACCCACTATGGATGTGAAGAAGGATTCCAACCTGTTGGGTATCCGTCGAACCTGCATAATGTTGATGGAGTGTCTGAGCATATTGTTAACAAACCCAGAGTTAGCCTCTGCTTCTGATATTATTACAGAGGAGGTTAAGGATATGGCAGAGACGATTGCTGAAGAATGGAAGCCAAAGTTGGATGCTCTTGACATGGATGCTAGCAATGGGAACTCACTGGAGGCTCATGCCTTTTTGCAGCTTCTAGCTACTTTTGATATTGCTTCCGGTTTTGATGAAGAAGAATTGTTCAGGCTAATTCCAATGGTTTCACGTCGTCGCCAAACAGCTGACCTTTGCCGTTCACTTGGATTGACAGAGAGAATGCCAGGTGTTATTGAAGTATTAGTGAACAGTGGAAGACAAATTGATGCAGTTAACCTGGCTTTTGCATTCGAACTGACAGAGCAGTTCTCTCCTGTGCCTTTGCTAAAGTCCTACTTGAAGGAGGCAAGAAAAGCTTCTTCACCAGTCAAACCTGGGAATGCATCTCCTACTGCACAGAATGAGGTGAGCGAGAGAGAGCTGACTGCTCTTAAGGCGGTGATCAAGTCCATTGAGGAGCATAAGCTTGAGGAGCAGTATCCAGTGGATCCACTCCAAAGACGGGTTGTTCAGCTGGAAAAGGCCAAGGCAGACAAGAAGAGGGTGACTGAAGCTGCAAAGCCTCAACCCAAGAGACCTCGTGCTAATGGTGTCGGATATGGCCCCCGGGTCACTAATGTTGTTGCAGAGAAGACTTTCTATCCTAGAGTCGCTGATAATAGGTACCCACAGTACGTTTATGACAGACAGTTTGTTTACCCCGGACCTGCTGACAACCACTGCCCATCTGTTCTGGGTTCTGCTACGTACAACATGCCCCCTGCTCATGGCAACTACTTTGCAACTGGCTACCAGTATCAGCCTGCGTATCTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

546

Amino Acids

61.39

Weight (kDa)

5.38

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	166 - 457	2e-110	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77490 AT1G77490 AT4G08390 AT4G08390 AT4G08390 AT4G08390 AT4G08390
fragaria_vesca	FvH4_2g27340 FvH4_2g27340 FvH4_2g27340 FvH4_2g27340
malus_domestica	MD00G1029300.v1.1
prunus_persica	Prupe.1G493900_v2.0.a1 Prupe.1G493900_v2.0.a1
pyrus_communis	pycom15g31010
rosa_chinensis	RchiOBHm_Chr6g0296151
rosa_laevigata	RLG00000011722
rosa_multiflora	Rmu_sc0000486.1_g000008 Rmu_sc0012446.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171790 Rroxscaffold_7G00178270
rosa_rugosa	Rorug06G0258900.1 Rorug06G0259000
rosa_samantha	Rh6AG371200 Rh6BG379100 Rh6CG384400 Rh6DG371700
rosa_wichuraiana	Rw6G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	737, 1537
Acc65I	GGTACC	1 cut(s)	1485
AccB1I	GGYRCC	1 cut(s)	1485
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	5 cut(s)	98, 244, 620, 667, 1259
AclWI	GGATC	2 cut(s)	1304, 1317
AcoI	YGGCCR	2 cut(s)	388, 621
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	3 cut(s)	47, 858, 1392
AfaI	GTAC	3 cut(s)	1487, 1496, 1571
AfiI	CCNNNNNNNGG	4 cut(s)	165, 476, 1324, 1589
AflII	CTTAAG	1 cut(s)	1253
AgsI	TTSAA	7 cut(s)	115, 131, 206, 293, 413, 1058, 1162
AjiI	CACGTC	1 cut(s)	992
AjnI	CCWGG	4 cut(s)	669, 1045, 1098, 1195
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	821, 1390
AlwI	GGATC	2 cut(s)	1304, 1317
Ama87I	CYCGRG	2 cut(s)	333, 1428
AoxI	GGCC	5 cut(s)	388, 541, 621, 1344, 1423
ApeKI	GCWGC	6 cut(s)	251, 308, 581, 617, 916, 1376
ApoI	RAATTY	1 cut(s)	551
ArsI	GACNNNNNNTTYG	2 cut(s)	1496, 1528
Asp700I	GAANNNNTTC	3 cut(s)	288, 1177, 1457
Asp718I	GGTACC	1 cut(s)	1485
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	677, 1424, 1526
AsuC2I	CCSGG	3 cut(s)	1429, 1430, 1524
AsuHPI	GGTGA	6 cut(s)	83, 393, 1176, 1240, 1273, 1378
AsuII	TTCGAA	1 cut(s)	1113
AsuNHI	GCTAGC	1 cut(s)	878
AvaI	CYCGRG	2 cut(s)	333, 1428
AvaII	GGWCC	2 cut(s)	677, 1526
BamHI	GGATCC	1 cut(s)	1309
BanI	GGYRCC	1 cut(s)	1485
BauI	CACGAG	1 cut(s)	1401
BbsI	GAAGAC	4 cut(s)	360, 663, 1084, 1460
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	6 cut(s)	263, 295, 568, 604, 928, 1363
BccI	CCATC	5 cut(s)	329, 427, 523, 736, 1555
BceAI	ACGGC	2 cut(s)	403, 1002
BciT130I	CCWGG	4 cut(s)	671, 1047, 1100, 1197
BciVI	GTATCC	2 cut(s)	728, 1311
BclI	TGATCA	1 cut(s)	1263
BcnI	CCSGG	3 cut(s)	1429, 1430, 1524
BcoDI	GTCTC	2 cut(s)	821, 1390
BfaI	CTAG	5 cut(s)	210, 236, 879, 923, 1467
BfrI	CTTAAG	1 cut(s)	1253
BfuAI	ACCTGC	2 cut(s)	737, 1537
BfuI	GTATCC	2 cut(s)	728, 1311
BisI	GCNGC	8 cut(s)	245, 252, 309, 582, 618, 621, 917, 1377
BlsI	GCNGC	8 cut(s)	246, 253, 310, 583, 619, 622, 918, 1378
Bme1390I	CCNGG	7 cut(s)	671, 1047, 1100, 1197, 1429, 1430, 1524
Bme18I	GGWCC	2 cut(s)	677, 1526
BmeT110I	CYCGRG	2 cut(s)	333, 1428
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	3 cut(s)	677, 1424, 1526
BmiI	GGNNCC	4 cut(s)	679, 1311, 1426, 1487
BmrFI	CCNGG	7 cut(s)	671, 1047, 1100, 1197, 1429, 1430, 1524
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	5 cut(s)	295, 850, 865, 1078, 1214
BmtI	GCTAGC	1 cut(s)	882
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	4 cut(s)	360, 663, 1084, 1460
BplI	GAGNNNNNCTC	4 cut(s)	767, 799, 1115, 1147
BpmI	CTGGAG	1 cut(s)	917
Bpu14I	TTCGAA	1 cut(s)	1113
BpuEI	CTTGAG	3 cut(s)	104, 170, 1310
BpuMI	CCSGG	3 cut(s)	1429, 1430, 1524
BsaAI	YACGTR	1 cut(s)	1569
BsaI	GGTCTC	1 cut(s)	1390
BsaJI	CCNNGG	8 cut(s)	142, 264, 391, 1196, 1347, 1427, 1428, 1522
BsaWI	WCCGGW	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 476, 1324, 1589
Bse1I	ACTGG	7 cut(s)	285, 505, 900, 1187, 1304, 1612, 1615
Bse3DI	GCAATG	1 cut(s)	889
BseBI	CCWGG	4 cut(s)	671, 1047, 1100, 1197
BseDI	CCNNGG	8 cut(s)	142, 264, 391, 1196, 1347, 1427, 1428, 1522
BseGI	GGATG	4 cut(s)	498, 694, 865, 880
BseLI	CCNNNNNNNGG	4 cut(s)	165, 476, 1324, 1589
BseMI	GCAATG	1 cut(s)	889
BseMII	CTCAG	4 cut(s)	30, 351, 549, 743
BseNI	ACTGG	7 cut(s)	285, 505, 900, 1187, 1304, 1612, 1615
BseRI	GAGGAG	5 cut(s)	377, 608, 821, 1292, 1307
BseX3I	CGGCCG	1 cut(s)	388
BseXI	GCAGC	6 cut(s)	263, 295, 568, 604, 928, 1363
BsgI	GTGCAG	1 cut(s)	1200
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	5 cut(s)	390, 543, 623, 1346, 1425
BshNI	GGYRCC	1 cut(s)	1485
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	2 cut(s)	333, 1428
BsiSI	CCGG	3 cut(s)	945, 1429, 1524
BslI	CCNNNNNNNGG	4 cut(s)	165, 476, 1324, 1589
BsmAI	GTCTC	2 cut(s)	821, 1390
BsmBI	CGTCTC	1 cut(s)	821
BsmI	GAATGC	4 cut(s)	237, 1047, 1109, 1207
BsnI	GGCC	5 cut(s)	390, 543, 623, 1346, 1425
Bso31I	GGTCTC	1 cut(s)	1390
BsoBI	CYCGRG	2 cut(s)	333, 1428
Bsp119I	TTCGAA	1 cut(s)	1113
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	1263, 1309
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	5 cut(s)	98, 244, 620, 667, 1259
BspANI	GGCC	5 cut(s)	390, 543, 623, 1346, 1425
BspCNI	CTCAG	4 cut(s)	29, 352, 548, 744
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	679, 1311, 1426, 1487
BspMI	ACCTGC	2 cut(s)	737, 1537
BspOI	GCTAGC	1 cut(s)	882
BspPI	GGATC	2 cut(s)	1304, 1317
BspQI	GCTCTTC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	1113
BspT107I	GGYRCC	1 cut(s)	1485
BspTI	CTTAAG	1 cut(s)	1253
BspTNI	GGTCTC	1 cut(s)	1390
BsrBI	CCGCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	889
BsrI	ACTGG	7 cut(s)	285, 505, 900, 1187, 1304, 1612, 1615
BssECI	CCNNGG	8 cut(s)	142, 264, 391, 1196, 1347, 1427, 1428, 1522
BssMI	GATC	2 cut(s)	1263, 1309
BssSI	CACGAG	1 cut(s)	1401
BssT1I	CCWWGG	3 cut(s)	142, 264, 1347
Bst2BI	CACGAG	1 cut(s)	1401
Bst2UI	CCWGG	4 cut(s)	671, 1047, 1100, 1197
Bst4CI	ACNGT	5 cut(s)	217, 409, 1073, 1494, 1512
Bst6I	CTCTTC	5 cut(s)	126, 293, 294, 408, 1355
BstAFI	CTTAAG	1 cut(s)	1253
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	1569
BstBI	TTCGAA	1 cut(s)	1113
BstC8I	GCNNGC	3 cut(s)	249, 880, 1626
BstDEI	CTNAG	4 cut(s)	16, 360, 535, 752
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	3 cut(s)	89, 100, 399
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	4 cut(s)	498, 694, 865, 880
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	1266, 1312
BstMAI	GTCTC	2 cut(s)	821, 1390
BstMBI	GATC	2 cut(s)	1263, 1309
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	9 cut(s)	232, 241, 260, 317, 614, 629, 1175, 1256, 1294
BstNI	CCWGG	4 cut(s)	671, 1047, 1100, 1197
BstNSI	RCATGY	1 cut(s)	1579
BstPI	GGTNACC	3 cut(s)	89, 100, 399
BstSCI	CCNGG	7 cut(s)	669, 1045, 1098, 1195, 1427, 1428, 1522
BstSNI	TACGTA	1 cut(s)	1569
BstV1I	GCAGC	6 cut(s)	263, 295, 568, 604, 928, 1363
BstV2I	GAAGAC	4 cut(s)	360, 663, 1084, 1460
BstX2I	RGATCY	1 cut(s)	1309
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	1309
BstZI	CGGCCG	1 cut(s)	388
BsuI	GTATCC	2 cut(s)	728, 1311
BsuRI	GGCC	5 cut(s)	390, 543, 623, 1346, 1425
BtgI	CCRYGG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	4 cut(s)	498, 694, 865, 880
BtsI	GCAGTG	1 cut(s)	1540
BtsIMutI	CAGTG	6 cut(s)	222, 378, 893, 1078, 1311, 1540
BveI	ACCTGC	2 cut(s)	737, 1537
Cac8I	GCNNGC	3 cut(s)	249, 880, 1626
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	677, 1424, 1526
Cfr9I	CCCGGG	1 cut(s)	1428
Csp6I	GTAC	3 cut(s)	1486, 1495, 1570
CviAII	CATG	6 cut(s)	143, 176, 871, 905, 1576, 1589
CviQI	GTAC	3 cut(s)	1486, 1495, 1570
DdeI	CTNAG	4 cut(s)	16, 360, 535, 752
DpnI	GATC	2 cut(s)	1265, 1311
DpnII	GATC	2 cut(s)	1263, 1309
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	388, 621
EagI	CGGCCG	1 cut(s)	388
Eam1104I	CTCTTC	5 cut(s)	126, 293, 294, 408, 1355
EarI	CTCTTC	5 cut(s)	126, 293, 294, 408, 1355
EclXI	CGGCCG	1 cut(s)	388
Eco105I	TACGTA	1 cut(s)	1569
Eco130I	CCWWGG	3 cut(s)	142, 264, 1347
Eco147I	AGGCCT	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	1390
Eco47I	GGWCC	2 cut(s)	677, 1526
Eco52I	CGGCCG	1 cut(s)	388
Eco57I	CTGAAG	3 cut(s)	47, 858, 1392
Eco88I	CYCGRG	2 cut(s)	333, 1428
Eco91I	GGTNACC	3 cut(s)	89, 100, 399
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	677
EcoO65I	GGTNACC	3 cut(s)	89, 100, 399
EcoRII	CCWGG	4 cut(s)	669, 1045, 1098, 1195
EcoT14I	CCWWGG	3 cut(s)	142, 264, 1347
EcoT22I	ATGCAT	1 cut(s)	1207
ErhI	CCWWGG	3 cut(s)	142, 264, 1347
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	6 cut(s)	146, 179, 874, 908, 1579, 1592
FalI	AAGNNNNNCTT	4 cut(s)	1142, 1174, 1162, 1194
FatI	CATG	6 cut(s)	142, 175, 870, 904, 1575, 1588
FbaI	TGATCA	1 cut(s)	1263
Fnu4HI	GCNGC	8 cut(s)	245, 252, 309, 582, 618, 621, 917, 1377
FokI	GGATG	4 cut(s)	505, 701, 872, 887
Fsp4HI	GCNGC	8 cut(s)	245, 252, 309, 582, 618, 621, 917, 1377
FspBI	CTAG	5 cut(s)	210, 236, 879, 923, 1467
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	8 cut(s)	245, 252, 309, 582, 618, 621, 917, 1377
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	5 cut(s)	390, 543, 623, 1346, 1425
HapII	CCGG	3 cut(s)	945, 1429, 1524
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	6 cut(s)	146, 179, 874, 908, 1579, 1592
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	765, 1096
HindII	GTYRAC	2 cut(s)	765, 1096
HindIII	AAGCTT	2 cut(s)	1176, 1286
HinfI	GANTC	7 cut(s)	35, 365, 533, 598, 647, 701, 1470
HpaI	GTTAAC	2 cut(s)	765, 1096
HpaII	CCGG	3 cut(s)	945, 1429, 1524
HphI	GGTGA	6 cut(s)	83, 393, 1176, 1240, 1273, 1378
Hpy166II	GTNNAC	7 cut(s)	514, 524, 765, 1022, 1069, 1096, 1519
Hpy188I	TCNGA	7 cut(s)	66, 442, 538, 562, 753, 793, 1418
Hpy188III	TCNNGA	6 cut(s)	176, 293, 335, 470, 653, 866
Hpy8I	GTNNAC	7 cut(s)	514, 524, 765, 1022, 1069, 1096, 1519
Hpy99I	CGWCG	3 cut(s)	726, 996, 999
HpyAV	CCTTC	7 cut(s)	61, 179, 343, 533, 668, 691, 1156
HpyCH4III	ACNGT	5 cut(s)	217, 409, 1073, 1494, 1512
HpyCH4IV	ACGT	3 cut(s)	991, 1497, 1568
HpyF10VI	GCNNNNNNNGC	9 cut(s)	232, 241, 260, 317, 614, 629, 1175, 1256, 1294
HpyF3I	CTNAG	4 cut(s)	16, 360, 535, 752
HpySE526I	ACGT	3 cut(s)	991, 1497, 1568
Hsp92II	CATG	6 cut(s)	146, 179, 874, 908, 1579, 1592
HspAI	GCGC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	1489
Ksp22I	TGATCA	1 cut(s)	1263
KspAI	GTTAAC	2 cut(s)	765, 1096
Kzo9I	GATC	2 cut(s)	1263, 1309
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	3 cut(s)	480, 1279, 1294
Lsp1109I	GCAGC	6 cut(s)	263, 295, 568, 604, 928, 1363
LweI	GCATC	5 cut(s)	295, 850, 865, 1078, 1214
MaeI	CTAG	5 cut(s)	210, 236, 879, 923, 1467
MaeII	ACGT	3 cut(s)	991, 1497, 1568
MaeIII	GTNAC	8 cut(s)	89, 100, 376, 399, 446, 460, 1366, 1432
MalI	GATC	2 cut(s)	1265, 1311
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	2 cut(s)	1263, 1309
MflI	RGATCY	1 cut(s)	1309
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	551, 962, 975, 1083
MlyI	GAGTC	3 cut(s)	374, 527, 1479
MmeI	TCCRAC	3 cut(s)	729, 837, 1396
Mph1103I	ATGCAT	1 cut(s)	1207
MroXI	GAANNNNTTC	3 cut(s)	288, 1177, 1457
MseI	TTAA	5 cut(s)	161, 764, 813, 1095, 1254
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	3 cut(s)	254, 1007, 1336
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	3 cut(s)	945, 1429, 1524
MspR9I	CCNGG	7 cut(s)	671, 1047, 1100, 1197, 1429, 1430, 1524
Mva1269I	GAATGC	4 cut(s)	237, 1047, 1109, 1207
MvaI	CCWGG	4 cut(s)	671, 1047, 1100, 1197
MwoI	GCNNNNNNNGC	9 cut(s)	232, 241, 260, 317, 614, 629, 1175, 1256, 1294
NciI	CCSGG	3 cut(s)	1429, 1430, 1524
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	1263, 1309
NheI	GCTAGC	1 cut(s)	878
NlaIII	CATG	6 cut(s)	146, 179, 874, 908, 1579, 1592
NlaIV	GGNNCC	4 cut(s)	679, 1311, 1426, 1487
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	6 cut(s)	89, 376, 399, 460, 1366, 1432
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	1 cut(s)	1579
NspV	TTCGAA	1 cut(s)	1113
PaeR7I	CTCGAG	1 cut(s)	333
PagI	TCATGA	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	126
PctI	GAATGC	4 cut(s)	237, 1047, 1109, 1207
PdmI	GAANNNNTTC	3 cut(s)	288, 1177, 1457
PfeI	GAWTC	4 cut(s)	35, 598, 647, 701
PkrI	GCNGC	8 cut(s)	246, 253, 310, 583, 619, 622, 918, 1378
PleI	GAGTC	3 cut(s)	373, 527, 1478
PpsI	GAGTC	3 cut(s)	373, 527, 1478
Ppu21I	YACGTR	1 cut(s)	1569
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	4 cut(s)	669, 1045, 1098, 1195
PspEI	GGTNACC	3 cut(s)	89, 100, 399
PspGI	CCWGG	4 cut(s)	669, 1045, 1098, 1195
PspN4I	GGNNCC	4 cut(s)	679, 1311, 1426, 1487
PspPI	GGNCC	3 cut(s)	677, 1424, 1526
PspPPI	RGGWCCY	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	1309
PvuII	CAGCTG	3 cut(s)	254, 1007, 1336
RsaI	GTAC	3 cut(s)	1487, 1496, 1571
RsaNI	GTAC	3 cut(s)	1486, 1495, 1570
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	161, 764, 813, 1095, 1254
SatI	GCNGC	8 cut(s)	245, 252, 309, 582, 618, 621, 917, 1377
Sau3AI	GATC	2 cut(s)	1263, 1309
Sau96I	GGNCC	3 cut(s)	677, 1424, 1526
SchI	GAGTC	3 cut(s)	374, 527, 1479
ScrFI	CCNGG	7 cut(s)	671, 1047, 1100, 1197, 1429, 1430, 1524
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	5 cut(s)	295, 850, 865, 1078, 1214
Sfr274I	CTCGAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	1113
SinI	GGWCC	2 cut(s)	677, 1526
SlaI	CTCGAG	1 cut(s)	333
SmaI	CCCGGG	1 cut(s)	1430
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	5 cut(s)	83, 149, 333, 1253, 1289
SmoI	CTYRAG	5 cut(s)	83, 149, 333, 1253, 1289
SnaBI	TACGTA	1 cut(s)	1569
Sse9I	AATT	4 cut(s)	551, 962, 975, 1083
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	5 cut(s)	98, 244, 620, 667, 1259
SspMI	CTAG	5 cut(s)	210, 236, 879, 923, 1467
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	7 cut(s)	669, 1045, 1098, 1195, 1427, 1428, 1522
StyI	CCWWGG	3 cut(s)	142, 264, 1347
TaaI	ACNGT	5 cut(s)	217, 409, 1073, 1494, 1512
TaiI	ACGT	3 cut(s)	994, 1500, 1571
TaqI	TCGA	4 cut(s)	334, 356, 724, 1113
TasI	AATT	4 cut(s)	551, 962, 975, 1083
TauI	GCSGC	2 cut(s)	247, 623
TfiI	GAWTC	4 cut(s)	35, 598, 647, 701
Tru1I	TTAA	5 cut(s)	161, 764, 813, 1095, 1254
Tru9I	TTAA	5 cut(s)	161, 764, 813, 1095, 1254
TscAI	CASTG	6 cut(s)	222, 385, 900, 1078, 1311, 1547
TseFI	GTSAC	6 cut(s)	89, 376, 399, 460, 1366, 1432
TseI	GCWGC	6 cut(s)	251, 308, 581, 617, 916, 1376
Tsp45I	GTSAC	6 cut(s)	89, 376, 399, 460, 1366, 1432
TspDTI	ATGAA	2 cut(s)	164, 969
TspGWI	ACGGA	1 cut(s)	710
TspMI	CCCGGG	1 cut(s)	1428
TspRI	CASTG	6 cut(s)	222, 385, 900, 1078, 1311, 1547
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	2 cut(s)	677, 1526
XagI	CCTNNNNNAGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	1579
XhoI	CTCGAG	1 cut(s)	333
XmaI	CCCGGG	1 cut(s)	1428
XmnI	GAANNNNTTC	3 cut(s)	288, 1177, 1457
XspI	CTAG	5 cut(s)	210, 236, 879, 923, 1467
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.