Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012446.1

Orthogroup ID

OG0005692

Physical Location & Seq

Genomic Coordinates Forward (+)

9773 .. 10916

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012446.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggcctccgtcgctctcggcggcgccgccgctgctacctctactcgctgcctcctcccctccgccagagcctccctctctctgtctcgctcttctccttcgtctctcaaatgccgaggcctcggctcttctccgctcatctctcacctcttcctcagccgcaaagcctcgccgatggcttgctcctccagccgcggcttcgccgccgctccgaaatgcgcggcttccgatcccgagcagctcaagcttgcgaaggaggacatcaaggagctcctcaagactaagttctgccatccaattctggttcggctgggatggcacgattctggaacttacaacaagaacatcgaggagtggccgcagagaggtggagctaatgggagcttgaggtttgagattgagcttaagcacgccgctaatgcaggtcttgtgaatgctttgaagcttattcagcctatcaaagacaagtactctggtgtcacatacgcagacttgttccaattggctagtgctagcgctgtggaggatgctgggggcccaaagattcctatgaagtatgggagagttgatgtttcagcaccagagcagtgcccagaagaaggaaggcttcctgatgccggccccacttcacctgctgatcatctacgtgaggtgttctacagaatggggttaaatgacaaggtgcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010019 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0023052 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0070887 GO:0071588 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

229

Amino Acids

24.43

Weight (kDa)

9.25

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77490 AT1G77490 AT4G08390 AT4G08390 AT4G08390 AT4G08390 AT4G08390
fragaria_vesca	FvH4_2g27340 FvH4_2g27340 FvH4_2g27340 FvH4_2g27340
malus_domestica	MD00G1029300.v1.1
prunus_persica	Prupe.1G493900_v2.0.a1 Prupe.1G493900_v2.0.a1
pyrus_communis	pycom15g31010
rosa_chinensis	RchiOBHm_Chr6g0296151
rosa_laevigata	RLG00000011722
rosa_multiflora	Rmu_sc0000486.1_g000008 Rmu_sc0012446.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171790 Rroxscaffold_7G00178270
rosa_rugosa	Rorug06G0258900.1 Rorug06G0259000
rosa_samantha	Rh6AG371200 Rh6BG379100 Rh6CG384400 Rh6DG371700
rosa_wichuraiana	Rw6G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	2 cut(s)	413, 640
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	2 cut(s)	136, 209
AccII	CGCG	2 cut(s)	195, 221
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	470
AfeI	AGCGCT	1 cut(s)	517
AfiI	CCNNNNNNNGG	3 cut(s)	365, 599, 617
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	442
AluBI	AGCT	7 cut(s)	241, 247, 271, 374, 384, 403, 445
AluI	AGCT	7 cut(s)	241, 247, 271, 374, 384, 403, 445
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	90, 108
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	517
AoxI	GGCC	5 cut(s)	3, 118, 356, 535, 619
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	32, 48, 238
AspLEI	GCGC	3 cut(s)	26, 221, 518
AspS9I	GGNCC	3 cut(s)	535, 536, 620
AsuHPI	GGTGA	2 cut(s)	137, 621
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	2 cut(s)	539, 593
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	273, 539
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	19, 35, 250
BccI	CCATC	3 cut(s)	169, 300, 309
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	90, 108
BfaI	CTAG	2 cut(s)	507, 513
BfmI	CTRYAG	1 cut(s)	658
BfoI	RGCGCY	2 cut(s)	27, 519
BfrI	CTTAAG	1 cut(s)	404
BfuAI	ACCTGC	2 cut(s)	413, 640
BmcAI	AGTACT	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	535, 536, 620
BmiI	GGNNCC	4 cut(s)	25, 536, 537, 622
BmsI	GCATC	2 cut(s)	517, 604
BmtI	GCTAGC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	3 cut(s)	227, 260, 406
BsaAI	YACGTR	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	115, 121, 193
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 599, 617
Bse118I	RCCGGY	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	115, 121, 193
BseGI	GGATG	3 cut(s)	292, 320, 532
BseLI	CCNNNNNNNGG	3 cut(s)	365, 599, 617
BseMII	CTCAG	1 cut(s)	169
BseRI	GAGGAG	4 cut(s)	44, 175, 263, 365
BseSI	GKGCMC	2 cut(s)	539, 593
BseXI	GCAGC	3 cut(s)	19, 35, 250
BseYI	CCCAGC	2 cut(s)	310, 530
Bsh1236I	CGCG	2 cut(s)	195, 221
BshFI	GGCC	5 cut(s)	5, 120, 358, 537, 621
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	3 cut(s)	365, 599, 617
BsmAI	GTCTC	2 cut(s)	90, 108
BsmBI	CGTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	5 cut(s)	5, 120, 358, 537, 621
BsoBI	CYCGRG	1 cut(s)	233
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	3 cut(s)	273, 539, 593
Bsp143I	GATC	2 cut(s)	229, 637
BspANI	GGCC	5 cut(s)	5, 120, 358, 537, 621
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	195, 221
BspLI	GGNNCC	4 cut(s)	25, 536, 537, 622
BspMI	ACCTGC	2 cut(s)	413, 640
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	2 cut(s)	97, 133
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	404
BsrBI	CCGCTC	2 cut(s)	136, 209
BsrFI	RCCGGY	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	3 cut(s)	115, 121, 193
BssMI	GATC	2 cut(s)	229, 637
BssNI	GRCGYC	1 cut(s)	24
Bst6I	CTCTTC	3 cut(s)	97, 133, 155
BstACI	GRCGYC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	5 cut(s)	181, 249, 411, 514, 619
BstDEI	CTNAG	2 cut(s)	155, 282
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	292, 320, 532
BstFNI	CGCG	2 cut(s)	195, 221
BstH2I	RGCGCY	2 cut(s)	27, 519
BstHHI	GCGC	3 cut(s)	26, 221, 518
BstKTI	GATC	2 cut(s)	232, 640
BstMAI	GTCTC	2 cut(s)	90, 108
BstMBI	GATC	2 cut(s)	229, 637
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 32, 189, 244, 316, 419, 451
BstSFI	CTRYAG	1 cut(s)	658
BstSLI	GKGCMC	2 cut(s)	539, 593
BstUI	CGCG	2 cut(s)	195, 221
BstV1I	GCAGC	3 cut(s)	19, 35, 250
BsuRI	GGCC	5 cut(s)	5, 120, 358, 537, 621
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	292, 320, 532
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	1 cut(s)	593
BveI	ACCTGC	2 cut(s)	413, 640
Cac8I	GCNNGC	5 cut(s)	181, 249, 411, 514, 619
CfoI	GCGC	3 cut(s)	26, 221, 518
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	535, 536, 620
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	469
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	155, 282
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	2 cut(s)	231, 639
DpnII	GATC	2 cut(s)	229, 637
EaeI	YGGCCR	1 cut(s)	356
Eam1104I	CTCTTC	3 cut(s)	97, 133, 155
EarI	CTCTTC	3 cut(s)	97, 133, 155
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	273, 539
Eco47III	AGCGCT	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	273, 539
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	108
FaiI	YATR	3 cut(s)	484, 551, 558
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FbaI	TGATCA	1 cut(s)	637
FokI	GGATG	3 cut(s)	279, 327, 539
FriOI	GRGCYC	2 cut(s)	273, 539
FspBI	CTAG	2 cut(s)	507, 513
GlaI	GCGC	3 cut(s)	25, 220, 517
GsaI	CCCAGC	2 cut(s)	314, 534
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	2 cut(s)	27, 519
HaeIII	GGCC	5 cut(s)	5, 120, 358, 537, 621
HapII	CCGG	1 cut(s)	618
HhaI	GCGC	3 cut(s)	26, 221, 518
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	3 cut(s)	24, 219, 516
HinP1I	GCGC	3 cut(s)	24, 219, 516
HindIII	AAGCTT	2 cut(s)	245, 443
HinfI	GANTC	2 cut(s)	323, 544
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	2 cut(s)	137, 621
Hpy188I	TCNGA	2 cut(s)	213, 229
Hpy188III	TCNNGA	4 cut(s)	233, 277, 327, 611
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	108, 247, 593, 597
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 32, 189, 244, 316, 419, 451
HpyF3I	CTNAG	2 cut(s)	155, 282
HpySE526I	ACGT	1 cut(s)	646
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	3 cut(s)	24, 219, 516
KasI	GGCGCC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	617
KroNI	GCCGGC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	637
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	229, 637
LguI	GCTCTTC	2 cut(s)	97, 133
LmnI	GCTCC	6 cut(s)	188, 214, 268, 276, 371, 381
Lsp1109I	GCAGC	3 cut(s)	19, 35, 250
LweI	GCATC	2 cut(s)	517, 604
MaeI	CTAG	2 cut(s)	507, 513
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	231, 639
MbiI	CCGCTC	2 cut(s)	136, 209
MboI	GATC	2 cut(s)	229, 637
MboII	GAAGA	4 cut(s)	84, 120, 142, 608
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	3 cut(s)	273, 539, 593
MluCI	AATT	2 cut(s)	297, 500
Mly113I	GGCGCC	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	617
MseI	TTAA	3 cut(s)	405, 671, 688
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	2 cut(s)	32, 195
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	439
MvnI	CGCG	2 cut(s)	195, 221
MwoI	GCNNNNNNNGC	7 cut(s)	11, 32, 189, 244, 316, 419, 451
NaeI	GCCGGC	1 cut(s)	619
NarI	GGCGCC	1 cut(s)	24
NdeII	GATC	2 cut(s)	229, 637
NgoMIV	GCCGGC	1 cut(s)	617
NheI	GCTAGC	1 cut(s)	512
NlaIV	GGNNCC	4 cut(s)	25, 536, 537, 622
NmeAIII	GCCGAG	2 cut(s)	102, 140
NmuCI	GTSAC	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	640
PceI	AGGCCT	1 cut(s)	120
PciSI	GCTCTTC	2 cut(s)	97, 133
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	323, 544
PluTI	GGCGCC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	273
PspFI	CCCAGC	2 cut(s)	310, 530
PspN4I	GGNNCC	4 cut(s)	25, 536, 537, 622
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	3 cut(s)	535, 536, 620
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	2 cut(s)	97, 133
SaqAI	TTAA	3 cut(s)	405, 671, 688
Sau3AI	GATC	2 cut(s)	229, 637
Sau96I	GGNCC	3 cut(s)	535, 536, 620
ScaI	AGTACT	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	273, 539, 593
SfaNI	GCATC	2 cut(s)	517, 604
SfcI	CTRYAG	1 cut(s)	658
SfoI	GGCGCC	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	4 cut(s)	242, 275, 385, 404
SmoI	CTYRAG	4 cut(s)	242, 275, 385, 404
Sse9I	AATT	2 cut(s)	297, 500
SseBI	AGGCCT	1 cut(s)	120
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	507, 513
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	1 cut(s)	348
TasI	AATT	2 cut(s)	297, 500
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	323, 544
Tru1I	TTAA	3 cut(s)	405, 671, 688
Tru9I	TTAA	3 cut(s)	405, 671, 688
TscAI	CASTG	1 cut(s)	593
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	32, 48, 238
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	404
XspI	CTAG	2 cut(s)	507, 513
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.