Rroxscaffold_7G00171790

Belongs to the peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
12076642 .. 12080012
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171790.1

Sequence Viewer

Length: 1149 bp
ATGGCACACCATCACAGTCTTCTCTCCCCATCACTCCCAACAACTCCAACAGCATCCCACTCCCAAATTCACACTTCCCTTTCTTCTTCTTCTTCAACTCCAGCCATGGCCTCCGTCGCTCTCGGCGGCGCCGCCGCTGCTACCTCTACTCGCTGCCTCCTCCCCTCCGCCAGAGCCTCCCTCTCTCTGTCTCGCTCTTCTCCTTCGTCTCTCAAATGCCGAGGCCTCGGCTCTTCTCCGCTCATCTCTCACCTCTTCCTCAGCCGCAAAGCCTCGCCGATGGTGTGCTCCTCCAACCGCGGCTTCGCCGCCGCTCCGAAATGCGCGGCCTCCGATCCCGAGCAGCTCAAGCTTGCGAAGGAGGACATCAAGGAGCTCCTCAAGACTAAGTTCTGCCATCCAATTCTGGTTCGGCTGGGATGGCACGATTCTGGAACTTACAACAAGAACATTGAGGAGTGGCCGCAGAGAGGTGGAGCTAATGGGAGCTTGAGGTTTGAGATTGAGCTTAAGCACGCCGCTAATGCAGGTCTTGTGAATGCTTTGAAGCTTATTCAGCCTATCAAAGACAAGTACTCTGGTGTCTCATACGCAGACTTGTTCCAATTGGCTAGTGCTAGCGCTGTGGAGGATGCTGGGGGCCCAAAGATTCCTATGAAGTATGGGAGAGTTGATGTTTCAGCACCAGAGCAGTGCCCAGAAGAAGGAAGACTTCCTGATGCCGGCCCCCCTTCACCTGCTGATCATCTACGTGAGGTGTTCTACAGAATGGGGTTAAATGACAAGGAAATAGTTGCATTATCAGGGGCACACACTCTGGGGAGGTCCAGACCTGAACGCAGTGGTTGGGGCAAGCCAGAGACAAAGTATACGGTTGGCCATATGTTAGAGAAAGACGGGCCAGGTGCACCAGGAGGACAGTCTTGGACAGCACAATGGTTGAAGTTTGATAATTCCTACTTCAAGGTATTTGCTGAGAAGTATGCTGAAGATCAAGAAGCCTTCTTCAAGGACTATGCTGAAGCTCATGCTAAACTCAGCAATTTAGGAGCCAAATTTGATCCTCCAGAGGGTATTGTGATCGATGATGGTGCACAACCTGTACCAGAAAAGTTTGTGGCAGCTAAATACTCATCTGGCAAGGACTAG

Protein Analysis

382

Amino Acids

40.93

Weight (kDa)

8.58

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 120 - 326 4.7e-40 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 2 cut(s) 518, 745
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 2 cut(s) 241, 314
AccI GTMKAC 1 cut(s) 869
AccII CGCG 2 cut(s) 300, 326
AclWI GGATC 2 cut(s) 329, 1055
AcoI YGGCCR 2 cut(s) 461, 877
AcsI RAATTY 2 cut(s) 66, 1055
AcuI CTGAAG 2 cut(s) 1008, 1041
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 575, 1104
AfeI AGCGCT 1 cut(s) 622
AfiI CCNNNNNNNGG 4 cut(s) 470, 704, 722, 1070
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 5 cut(s) 96, 547, 943, 964, 1009
AjnI CCWGG 2 cut(s) 901, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 9 cut(s) 346, 352, 376, 479, 489, 508, 550, 1025, 1124
AluI AGCT 9 cut(s) 346, 352, 376, 479, 489, 508, 550, 1025, 1124
Alw21I GWGCWC 4 cut(s) 290, 378, 910, 1096
Alw26I GTCTC 4 cut(s) 195, 213, 589, 854
Alw44I GTGCAC 2 cut(s) 906, 1092
AlwI GGATC 2 cut(s) 329, 1055
Ama87I CYCGRG 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 622
AoxI GGCC 8 cut(s) 108, 223, 327, 461, 640, 724, 877, 899
ApaI GGGCCC 1 cut(s) 644
ApaLI GTGCAC 2 cut(s) 906, 1092
ApeKI GCWGC 4 cut(s) 137, 153, 343, 1121
ApoI RAATTY 2 cut(s) 66, 1055
AspLEI GCGC 3 cut(s) 131, 326, 623
AspS9I GGNCC 5 cut(s) 640, 641, 725, 825, 899
AsuHPI GGTGA 2 cut(s) 242, 726
AsuNHI GCTAGC 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 5 cut(s) 644, 698, 811, 910, 1096
BalI TGGCCA 1 cut(s) 879
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 378, 644
BbsI GAAGAC 2 cut(s) 11, 715
Bbv12I GWGCWC 4 cut(s) 290, 378, 910, 1096
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 124, 140, 355, 1133
BccI CCATC 6 cut(s) 18, 37, 274, 405, 414, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1073, 1107
BciT130I CCWGG 2 cut(s) 903, 912
BclI TGATCA 1 cut(s) 742
BcoDI GTCTC 4 cut(s) 195, 213, 589, 854
BfaI CTAG 3 cut(s) 612, 618, 1147
BfmI CTRYAG 1 cut(s) 763
BfoI RGCGCY 2 cut(s) 132, 624
BfrI CTTAAG 1 cut(s) 509
BfuAI ACCTGC 2 cut(s) 518, 745
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 2 cut(s) 903, 912
Bme18I GGWCC 1 cut(s) 825
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 5 cut(s) 640, 641, 725, 825, 899
BmiI GGNNCC 5 cut(s) 130, 641, 642, 727, 1051
BmrFI CCNGG 2 cut(s) 903, 912
BmsI GCATC 3 cut(s) 62, 622, 709
BmtI GCTAGC 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 11, 715
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 2 cut(s) 84, 1050
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 3 cut(s) 332, 365, 511
Bsa29I ATCGAT 1 cut(s) 1083
BsaAI YACGTR 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 105, 220, 226, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 704, 722, 1070
Bse118I RCCGGY 1 cut(s) 722
BseBI CCWGG 2 cut(s) 903, 912
BseCI ATCGAT 1 cut(s) 1083
BseDI CCNNGG 4 cut(s) 105, 220, 226, 298
BseGI GGATG 4 cut(s) 53, 397, 425, 637
BseLI CCNNNNNNNGG 4 cut(s) 470, 704, 722, 1070
BseMII CTCAG 3 cut(s) 274, 966, 1051
BseRI GAGGAG 4 cut(s) 149, 280, 368, 470
BseSI GKGCMC 5 cut(s) 644, 698, 811, 910, 1096
BseXI GCAGC 4 cut(s) 124, 140, 355, 1133
BseYI CCCAGC 2 cut(s) 415, 635
Bsh1236I CGCG 2 cut(s) 300, 326
BshFI GGCC 8 cut(s) 110, 225, 329, 463, 642, 726, 879, 901
BshNI GGYRCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 1083
BsiHKAI GWGCWC 4 cut(s) 290, 378, 910, 1096
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 723
BslI CCNNNNNNNGG 4 cut(s) 470, 704, 722, 1070
BsmAI GTCTC 4 cut(s) 195, 213, 589, 854
BsmBI CGTCTC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 8 cut(s) 110, 225, 329, 463, 642, 726, 879, 901
BsoBI CYCGRG 1 cut(s) 338
Bsp120I GGGCCC 1 cut(s) 640
Bsp1286I GDGCHC 7 cut(s) 290, 378, 644, 698, 811, 910, 1096
Bsp143I GATC 5 cut(s) 334, 742, 991, 1060, 1080
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 8 cut(s) 110, 225, 329, 463, 642, 726, 879, 901
BspCNI CTCAG 3 cut(s) 273, 967, 1050
BspDI ATCGAT 1 cut(s) 1083
BspFNI CGCG 2 cut(s) 300, 326
BspLI GGNNCC 5 cut(s) 130, 641, 642, 727, 1051
BspMI ACCTGC 2 cut(s) 518, 745
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 2 cut(s) 329, 1055
BspQI GCTCTTC 2 cut(s) 202, 238
BspT107I GGYRCC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 509
BsrBI CCGCTC 2 cut(s) 241, 314
BsrFI RCCGGY 1 cut(s) 722
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 4 cut(s) 105, 220, 226, 298
BssMI GATC 5 cut(s) 334, 742, 991, 1060, 1080
BssNAI GTATAC 1 cut(s) 870
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 903, 912
Bst4CI ACNGT 3 cut(s) 17, 874, 921
Bst6I CTCTTC 3 cut(s) 202, 238, 260
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 5 cut(s) 354, 516, 619, 724, 854
BstDEI CTNAG 4 cut(s) 260, 387, 975, 1037
BstDSI CCRYGG 2 cut(s) 105, 298
BstF5I GGATG 4 cut(s) 53, 397, 425, 637
BstFNI CGCG 2 cut(s) 300, 326
BstH2I RGCGCY 2 cut(s) 132, 624
BstHHI GCGC 3 cut(s) 131, 326, 623
BstKTI GATC 5 cut(s) 337, 745, 994, 1063, 1083
BstMAI GTCTC 4 cut(s) 195, 213, 589, 854
BstMBI GATC 5 cut(s) 334, 742, 991, 1060, 1080
BstMWI GCNNNNNNNGC 6 cut(s) 116, 137, 349, 421, 524, 556
BstNI CCWGG 2 cut(s) 903, 912
BstSCI CCNGG 2 cut(s) 901, 910
BstSFI CTRYAG 1 cut(s) 763
BstSLI GKGCMC 5 cut(s) 644, 698, 811, 910, 1096
BstUI CGCG 2 cut(s) 300, 326
BstV1I GCAGC 4 cut(s) 124, 140, 355, 1133
BstV2I GAAGAC 2 cut(s) 11, 715
BstZ17I GTATAC 1 cut(s) 870
Bsu15I ATCGAT 1 cut(s) 1083
BsuRI GGCC 8 cut(s) 110, 225, 329, 463, 642, 726, 879, 901
BsuTUI ATCGAT 1 cut(s) 1083
BtgI CCRYGG 2 cut(s) 105, 298
BtsCI GGATG 4 cut(s) 53, 397, 425, 637
BtsI GCAGTG 2 cut(s) 698, 847
BtsIMutI CAGTG 2 cut(s) 698, 847
BveI ACCTGC 2 cut(s) 518, 745
Cac8I GCNNGC 5 cut(s) 354, 516, 619, 724, 854
CfoI GCGC 3 cut(s) 131, 326, 623
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 5 cut(s) 640, 641, 725, 825, 899
Cfr42I CCGCGG 1 cut(s) 301
ClaI ATCGAT 1 cut(s) 1083
Csp6I GTAC 2 cut(s) 574, 1103
CviAII CATG 2 cut(s) 106, 1028
CviQI GTAC 2 cut(s) 574, 1103
DdeI CTNAG 4 cut(s) 260, 387, 975, 1037
DinI GGCGCC 1 cut(s) 130
DpnI GATC 5 cut(s) 336, 744, 993, 1062, 1082
DpnII GATC 5 cut(s) 334, 742, 991, 1060, 1080
EaeI YGGCCR 2 cut(s) 461, 877
Eam1104I CTCTTC 3 cut(s) 202, 238, 260
EarI CTCTTC 3 cut(s) 202, 238, 260
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 378, 644
Eco47I GGWCC 1 cut(s) 825
Eco47III AGCGCT 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 1008, 1041
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 901, 910
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 2 cut(s) 378, 644
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 2 cut(s) 109, 1031
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FatI CATG 2 cut(s) 105, 1027
FauNDI CATATG 1 cut(s) 882
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 869
FokI GGATG 4 cut(s) 40, 384, 432, 644
FriOI GRGCYC 2 cut(s) 378, 644
FspBI CTAG 3 cut(s) 612, 618, 1147
GlaI GCGC 3 cut(s) 130, 325, 622
GsaI CCCAGC 2 cut(s) 419, 639
GsuI CTGGAG 2 cut(s) 84, 1050
HaeII RGCGCY 2 cut(s) 132, 624
HaeIII GGCC 8 cut(s) 110, 225, 329, 463, 642, 726, 879, 901
HapII CCGG 1 cut(s) 723
HhaI GCGC 3 cut(s) 131, 326, 623
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 109, 1031
Hin6I GCGC 3 cut(s) 129, 324, 621
HinP1I GCGC 3 cut(s) 129, 324, 621
HindIII AAGCTT 2 cut(s) 350, 548
HinfI GANTC 2 cut(s) 428, 649
HpaII CCGG 1 cut(s) 723
HphI GGTGA 2 cut(s) 242, 726
Hpy166II GTNNAC 3 cut(s) 870, 908, 1094
Hpy188I TCNGA 2 cut(s) 318, 334
Hpy188III TCNNGA 7 cut(s) 338, 382, 432, 716, 828, 995, 1067
Hpy8I GTNNAC 3 cut(s) 870, 908, 1094
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 5 cut(s) 213, 352, 698, 741, 1012
HpyCH4III ACNGT 3 cut(s) 17, 874, 921
HpyCH4IV ACGT 1 cut(s) 751
HpyCH4V TGCA 4 cut(s) 527, 797, 908, 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 137, 349, 421, 524, 556
HpyF3I CTNAG 4 cut(s) 260, 387, 975, 1037
HpySE526I ACGT 1 cut(s) 751
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 109, 1031
HspAI GCGC 3 cut(s) 129, 324, 621
KasI GGCGCC 1 cut(s) 128
KroI GCCGGC 1 cut(s) 722
KroNI GCCGGC 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 742
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 5 cut(s) 334, 742, 991, 1060, 1080
LguI GCTCTTC 2 cut(s) 202, 238
LmnI GCTCC 7 cut(s) 293, 319, 373, 381, 476, 486, 1049
Lsp1109I GCAGC 4 cut(s) 124, 140, 355, 1133
LweI GCATC 3 cut(s) 62, 622, 709
MaeI CTAG 3 cut(s) 612, 618, 1147
MaeII ACGT 1 cut(s) 751
MalI GATC 5 cut(s) 336, 744, 993, 1062, 1082
MbiI CCGCTC 2 cut(s) 241, 314
MboI GATC 5 cut(s) 334, 742, 991, 1060, 1080
MfeI CAATTG 1 cut(s) 605
MhlI GDGCHC 7 cut(s) 290, 378, 644, 698, 811, 910, 1096
MlsI TGGCCA 1 cut(s) 879
MluCI AATT 6 cut(s) 66, 402, 605, 952, 1042, 1055
MluNI TGGCCA 1 cut(s) 879
Mly113I GGCGCC 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 71, 318
Mox20I TGGCCA 1 cut(s) 879
MroNI GCCGGC 1 cut(s) 722
MscI TGGCCA 1 cut(s) 879
MseI TTAA 2 cut(s) 510, 776
MslI CAYNNNNRTG 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 879
MspA1I CMGCKG 2 cut(s) 137, 300
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 1 cut(s) 723
MspR9I CCNGG 2 cut(s) 903, 912
MunI CAATTG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 2 cut(s) 903, 912
MvnI CGCG 2 cut(s) 300, 326
MwoI GCNNNNNNNGC 6 cut(s) 116, 137, 349, 421, 524, 556
NaeI GCCGGC 1 cut(s) 724
NarI GGCGCC 1 cut(s) 129
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 882
NdeII GATC 5 cut(s) 334, 742, 991, 1060, 1080
NgoMIV GCCGGC 1 cut(s) 722
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 2 cut(s) 109, 1031
NlaIV GGNNCC 5 cut(s) 130, 641, 642, 727, 1051
NmeAIII GCCGAG 3 cut(s) 102, 207, 245
PaqCI CACCTGC 1 cut(s) 745
PceI AGGCCT 1 cut(s) 225
PciSI GCTCTTC 2 cut(s) 202, 238
PctI GAATGC 1 cut(s) 544
PdiI GCCGGC 1 cut(s) 724
PfeI GAWTC 2 cut(s) 428, 649
PluTI GGCGCC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 901, 910
PspFI CCCAGC 2 cut(s) 415, 635
PspGI CCWGG 2 cut(s) 901, 910
PspN4I GGNNCC 5 cut(s) 130, 641, 642, 727, 1051
PspOMI GGGCCC 1 cut(s) 640
PspPI GGNCC 5 cut(s) 640, 641, 725, 825, 899
RsaI GTAC 2 cut(s) 575, 1104
RsaNI GTAC 2 cut(s) 574, 1103
RseI CAYNNNNRTG 1 cut(s) 750
SacI GAGCTC 1 cut(s) 378
SacII CCGCGG 1 cut(s) 301
SapI GCTCTTC 2 cut(s) 202, 238
SaqAI TTAA 2 cut(s) 510, 776
Sau3AI GATC 5 cut(s) 334, 742, 991, 1060, 1080
Sau96I GGNCC 5 cut(s) 640, 641, 725, 825, 899
ScaI AGTACT 1 cut(s) 575
ScrFI CCNGG 2 cut(s) 903, 912
SduI GDGCHC 7 cut(s) 290, 378, 644, 698, 811, 910, 1096
SfaNI GCATC 3 cut(s) 62, 622, 709
SfcI CTRYAG 1 cut(s) 763
SfoI GGCGCC 1 cut(s) 130
Sfr303I CCGCGG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 4 cut(s) 347, 380, 490, 509
SmoI CTYRAG 4 cut(s) 347, 380, 490, 509
Sse9I AATT 6 cut(s) 66, 402, 605, 952, 1042, 1055
SseBI AGGCCT 1 cut(s) 225
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 3 cut(s) 612, 618, 1147
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 901, 910
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 17, 874, 921
TaiI ACGT 1 cut(s) 754
TaqI TCGA 1 cut(s) 1083
TasI AATT 6 cut(s) 66, 402, 605, 952, 1042, 1055
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 2 cut(s) 428, 649
Tru1I TTAA 2 cut(s) 510, 776
Tru9I TTAA 2 cut(s) 510, 776
TscAI CASTG 2 cut(s) 698, 847
TseI GCWGC 4 cut(s) 137, 153, 343, 1121
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 2 cut(s) 698, 847
Vha464I CTTAAG 1 cut(s) 509
VneI GTGCAC 2 cut(s) 906, 1092
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 2 cut(s) 66, 1055
XmiI GTMKAC 1 cut(s) 869
XspI CTAG 3 cut(s) 612, 618, 1147
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.