Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005692

Physical Location & Seq

Genomic Coordinates Forward (+)

5314871 .. 5317963

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08390.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAGAGCGTGTGTCTCTCACACTCAACGGAACCCTCCTTTCTCCTCCTCCCACAACAACAACAACAACAATGTCTTCTTCTCTCCGATCTACCACCGCCGCTTCTCTTCTCCTCCGCTCCTCCTCCTCCTCCTCCAGATCCACTCTCACTCTCTCCGCTTCCTCCTCTCTCTCCTTCGTCAGATCTCTCGTCTCTTCTCCACGTCTCTCTTCTTCTTCATCCCTCTCTCAGAAGAAATATCGAATTGCGTCGGTGAATCGGAGTTTCAACTCCACCACCGCCGCTACTAAATCTTCATCTTCAGATCCTGATCAGTTGAAGAACGCTAGAGAAGATATCAAAGAGCTTCTCAGCACCAAATTCTGCCATCCGATTTTGGTTAGATTAGGTTGGCATGATGCTGGTACGTATAACAAGAACATTAAGGAATGGCCACAAAGAGGTGGAGCTAATGGAAGTTTGAGATTCGATATTGAGCTTAAACATGCTGCTAACGCTGGTCTTGTGAATGCTTTAAACTTGATTAAGGATATCAAAGAGAAATACTCTGGGATCAGTTATGCTGATTTGTTCCAGTTAGCTAGTGCTACTGCTATAGAGGAAGCTGGAGGACCGAAAATACCGATGAAATATGGTAGAGTTGATGCCTCTGGTCCTGAGGATTGTCCAGAAGAAGGAAGGCTTCCAGATGCTGGTCCTCCTTCACCTGCTACTCATCTCAGAGAAGTTTTTTACAGAATGGGATTAGATGACAAGGACATAGTTGCATTATCTGGTGCTCACACGTTAGGAAGATCTAGGCCAGAACGTAGTGGTTGGGGGAAGCCTGAGACGAAGTACACGAAAGAAGGACCTGGAGCACCAGGAGGACAGTCATGGACACCAGAGTGGCTGAAGTTTGATAATTCTTACTTCAAGGAGATCAAGGAAAAGAGAGATGAAGATCTCCTTGTCCTACCCACTGATGCTGCCATCTTCGAAGATTCTTCTTTCAAGGTCTATGCTGAAAAGTATGCTGCAGATCAGGATGCATTTTTCAAGGATTACGCTGTAGCCCATGCGAAGCTCAGCAATCTTGGAGCAGAATTTAACCCTCCGGAGGGTATCGTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010019 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0023052 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0070887 GO:0071588 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

372

Amino Acids

40.41

Weight (kDa)

8.31

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	111 - 342	3.3e-45	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77490 AT1G77490 AT4G08390 AT4G08390 AT4G08390 AT4G08390 AT4G08390
fragaria_vesca	FvH4_2g27340 FvH4_2g27340 FvH4_2g27340 FvH4_2g27340
malus_domestica	MD00G1029300.v1.1
prunus_persica	Prupe.1G493900_v2.0.a1 Prupe.1G493900_v2.0.a1
pyrus_communis	pycom15g31010
rosa_chinensis	RchiOBHm_Chr6g0296151
rosa_laevigata	RLG00000011722
rosa_multiflora	Rmu_sc0000486.1_g000008 Rmu_sc0012446.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171790 Rroxscaffold_7G00178270
rosa_rugosa	Rorug06G0258900.1 Rorug06G0259000
rosa_samantha	Rh6AG371200 Rh6BG379100 Rh6CG384400 Rh6DG371700
rosa_wichuraiana	Rw6G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	718
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccBSI	CCGCTC	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	1099
AciI	CCGC	6 cut(s)	99, 102, 118, 159, 282, 285
AclWI	GGATC	3 cut(s)	135, 302, 563
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	362, 1088
AcuI	CTGAAG	2 cut(s)	288, 917
AfaI	GTAC	2 cut(s)	409, 842
AfiI	CCNNNNNNNGG	5 cut(s)	443, 677, 695, 1102, 1103
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	5 cut(s)	271, 322, 919, 997, 1042
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	856, 865
AleI	CACNNNNGTG	1 cut(s)	889
AluBI	AGCT	6 cut(s)	349, 452, 481, 584, 608, 1069
AluI	AGCT	6 cut(s)	349, 452, 481, 584, 608, 1069
Alw21I	GWGCWC	2 cut(s)	784, 865
Alw26I	GTCTC	4 cut(s)	21, 199, 212, 827
AlwI	GGATC	3 cut(s)	135, 302, 563
AlwNI	CAGNNNCTG	2 cut(s)	311, 695
Aor13HI	TCCGGA	1 cut(s)	1099
AoxI	GGCC	2 cut(s)	434, 803
ApeKI	GCWGC	3 cut(s)	491, 971, 1019
ApoI	RAATTY	2 cut(s)	362, 1088
AspS9I	GGNCC	4 cut(s)	614, 656, 698, 854
AsuHPI	GGTGA	2 cut(s)	268, 699
AsuII	TTCGAA	1 cut(s)	981
AvaII	GGWCC	4 cut(s)	614, 656, 698, 854
AxyI	CCTNAGG	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	784, 865
BbvI	GCAGC	3 cut(s)	478, 958, 1006
BccI	CCATC	2 cut(s)	378, 983
BciT130I	CCWGG	2 cut(s)	858, 867
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	4 cut(s)	21, 199, 212, 827
BfaI	CTAG	3 cut(s)	330, 585, 801
BfmI	CTRYAG	3 cut(s)	597, 1020, 1053
BfuAI	ACCTGC	1 cut(s)	718
BglII	AGATCT	3 cut(s)	185, 797, 946
BisI	GCNGC	5 cut(s)	102, 285, 492, 972, 1020
BlpI	GCTNAGC	1 cut(s)	1070
BlsI	GCNGC	5 cut(s)	103, 286, 493, 973, 1021
Bme1390I	CCNGG	2 cut(s)	858, 867
Bme18I	GGWCC	4 cut(s)	614, 656, 698, 854
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	4 cut(s)	614, 656, 698, 854
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	858, 867
BmsI	GCATC	5 cut(s)	391, 637, 682, 958, 1021
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	3 cut(s)	121, 630, 879
Bpu1102I	GCTNAGC	1 cut(s)	1070
Bpu14I	TTCGAA	1 cut(s)	981
BsaAI	YACGTR	1 cut(s)	411
BsaBI	GATNNNNATC	2 cut(s)	312, 945
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	5 cut(s)	443, 677, 695, 1102, 1103
Bse1I	ACTGG	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	660
Bse8I	GATNNNNATC	2 cut(s)	312, 945
BseAI	TCCGGA	1 cut(s)	1099
BseBI	CCWGG	2 cut(s)	858, 867
BseGI	GGATG	3 cut(s)	221, 370, 1036
BseJI	GATNNNNATC	2 cut(s)	312, 945
BseLI	CCNNNNNNNGG	5 cut(s)	443, 677, 695, 1102, 1103
BseMII	CTCAG	6 cut(s)	245, 367, 651, 736, 822, 1084
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	9 cut(s)	36, 39, 104, 112, 115, 118, 121, 124, 157
BseXI	GCAGC	3 cut(s)	478, 958, 1006
BshFI	GGCC	2 cut(s)	436, 805
BsiHKAI	GWGCWC	2 cut(s)	784, 865
BsiSI	CCGG	1 cut(s)	1100
BslI	CCNNNNNNNGG	5 cut(s)	443, 677, 695, 1102, 1103
BsmAI	GTCTC	4 cut(s)	21, 199, 212, 827
BsmBI	CGTCTC	3 cut(s)	199, 212, 827
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	436, 805
Bsp119I	TTCGAA	1 cut(s)	981
Bsp1286I	GDGCHC	2 cut(s)	784, 865
Bsp13I	TCCGGA	1 cut(s)	1099
Bsp1720I	GCTNAGC	1 cut(s)	1070
BspACI	CCGC	6 cut(s)	99, 102, 118, 159, 282, 285
BspANI	GGCC	2 cut(s)	436, 805
BspCNI	CTCAG	6 cut(s)	244, 366, 652, 735, 823, 1083
BspEI	TCCGGA	1 cut(s)	1099
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	1024
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	3 cut(s)	135, 302, 563
BspT104I	TTCGAA	1 cut(s)	981
BsrBI	CCGCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	858, 867
Bst4CI	ACNGT	1 cut(s)	876
Bst6I	CTCTTC	3 cut(s)	114, 202, 217
BstBAI	YACGTR	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	981
BstDEI	CTNAG	6 cut(s)	231, 353, 660, 722, 831, 1070
BstF5I	GGATG	3 cut(s)	221, 370, 1036
BstMAI	GTCTC	4 cut(s)	21, 199, 212, 827
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	2 cut(s)	858, 867
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	856, 865
BstSFI	CTRYAG	3 cut(s)	597, 1020, 1053
BstSNI	TACGTA	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	478, 958, 1006
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	5 cut(s)	140, 185, 307, 797, 946
BstYI	RGATCY	5 cut(s)	140, 185, 307, 797, 946
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	436, 805
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	221, 370, 1036
BtsIMutI	CAGTG	1 cut(s)	963
BveI	ACCTGC	1 cut(s)	718
CaiI	CAGNNNCTG	2 cut(s)	311, 695
Cfr13I	GGNCC	4 cut(s)	614, 656, 698, 854
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	408, 841
CviAII	CATG	4 cut(s)	398, 488, 879, 1061
CviQI	GTAC	2 cut(s)	408, 841
DdeI	CTNAG	6 cut(s)	231, 353, 660, 722, 831, 1070
DraI	TTTAAA	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	3 cut(s)	114, 202, 217
EarI	CTCTTC	3 cut(s)	114, 202, 217
Eco105I	TACGTA	1 cut(s)	411
Eco32I	GATATC	2 cut(s)	340, 535
Eco47I	GGWCC	4 cut(s)	614, 656, 698, 854
Eco57I	CTGAAG	2 cut(s)	288, 917
Eco81I	CCTNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	856, 865
EcoRV	GATATC	2 cut(s)	340, 535
EcoT22I	ATGCAT	1 cut(s)	1036
Esp3I	CGTCTC	3 cut(s)	199, 212, 827
FaeI	CATG	4 cut(s)	401, 491, 882, 1064
FalI	AAGNNNNNCTT	4 cut(s)	669, 701, 936, 968
FatI	CATG	4 cut(s)	397, 487, 878, 1060
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	102, 285, 492, 972, 1020
FokI	GGATG	3 cut(s)	208, 357, 1043
Fsp4HI	GCNGC	5 cut(s)	102, 285, 492, 972, 1020
FspBI	CTAG	3 cut(s)	330, 585, 801
GluI	GCNGC	5 cut(s)	102, 285, 492, 972, 1020
GsuI	CTGGAG	3 cut(s)	121, 630, 879
HaeIII	GGCC	2 cut(s)	436, 805
HapII	CCGG	1 cut(s)	1100
HgaI	GACGC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	401, 491, 882, 1064
HinfI	GANTC	3 cut(s)	259, 468, 986
HpaII	CCGG	1 cut(s)	1100
HphI	GGTGA	2 cut(s)	268, 699
Hpy166II	GTNNAC	1 cut(s)	843
Hpy188I	TCNGA	7 cut(s)	89, 185, 234, 264, 307, 375, 725
Hpy188III	TCNNGA	7 cut(s)	138, 311, 659, 671, 689, 1028, 1100
Hpy8I	GTNNAC	1 cut(s)	843
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	5 cut(s)	187, 671, 675, 714, 845
HpyCH4III	ACNGT	1 cut(s)	876
HpyCH4IV	ACGT	4 cut(s)	205, 410, 788, 811
HpyCH4V	TGCA	3 cut(s)	770, 1022, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	6 cut(s)	231, 353, 660, 722, 831, 1070
HpySE526I	ACGT	4 cut(s)	205, 410, 788, 811
Hsp92II	CATG	4 cut(s)	401, 491, 882, 1064
Kpn2I	TCCGGA	1 cut(s)	1099
Ksp22I	TGATCA	1 cut(s)	313
LmnI	GCTCC	4 cut(s)	125, 449, 860, 1082
Lsp1109I	GCAGC	3 cut(s)	478, 958, 1006
LweI	GCATC	5 cut(s)	391, 637, 682, 958, 1021
MaeI	CTAG	3 cut(s)	330, 585, 801
MaeII	ACGT	4 cut(s)	205, 410, 788, 811
MbiI	CCGCTC	1 cut(s)	120
MflI	RGATCY	5 cut(s)	140, 185, 307, 797, 946
MhlI	GDGCHC	2 cut(s)	784, 865
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	4 cut(s)	246, 362, 907, 1088
MluNI	TGGCCA	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	436
Mph1103I	ATGCAT	1 cut(s)	1036
MroI	TCCGGA	1 cut(s)	1099
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	5 cut(s)	426, 483, 518, 528, 1092
MslI	CAYNNNNRTG	1 cut(s)	889
Msp20I	TGGCCA	1 cut(s)	436
MspI	CCGG	1 cut(s)	1100
MspR9I	CCNGG	2 cut(s)	858, 867
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	858, 867
MwoI	GCNNNNNNNGC	1 cut(s)	497
NlaIII	CATG	4 cut(s)	401, 491, 882, 1064
NlaIV	GGNNCC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	981
OliI	CACNNNNGTG	1 cut(s)	889
PaqCI	CACCTGC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	259, 468, 986
PflMI	CCANNNNNTGG	1 cut(s)	695
PkrI	GCNGC	5 cut(s)	103, 286, 493, 973, 1021
Ppu21I	YACGTR	1 cut(s)	411
PpuMI	RGGWCCY	1 cut(s)	854
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	856, 865
PspGI	CCWGG	2 cut(s)	856, 865
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	4 cut(s)	614, 656, 698, 854
PspPPI	RGGWCCY	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	1024
PstNI	CAGNNNCTG	2 cut(s)	311, 695
PsuI	RGATCY	5 cut(s)	140, 185, 307, 797, 946
RsaI	GTAC	2 cut(s)	409, 842
RsaNI	GTAC	2 cut(s)	408, 841
RseI	CAYNNNNRTG	1 cut(s)	889
SaqAI	TTAA	5 cut(s)	426, 483, 518, 528, 1092
SatI	GCNGC	5 cut(s)	102, 285, 492, 972, 1020
Sau96I	GGNCC	4 cut(s)	614, 656, 698, 854
ScrFI	CCNGG	2 cut(s)	858, 867
SduI	GDGCHC	2 cut(s)	784, 865
SfaNI	GCATC	5 cut(s)	391, 637, 682, 958, 1021
SfcI	CTRYAG	3 cut(s)	597, 1020, 1053
SfuI	TTCGAA	1 cut(s)	981
SinI	GGWCC	4 cut(s)	614, 656, 698, 854
SmiMI	CAYNNNNRTG	1 cut(s)	889
SnaBI	TACGTA	1 cut(s)	411
Sse9I	AATT	4 cut(s)	246, 362, 907, 1088
SsiI	CCGC	6 cut(s)	99, 102, 118, 159, 282, 285
SspMI	CTAG	3 cut(s)	330, 585, 801
StyD4I	CCNGG	2 cut(s)	856, 865
TaaI	ACNGT	1 cut(s)	876
TaiI	ACGT	4 cut(s)	208, 413, 791, 814
TaqI	TCGA	3 cut(s)	244, 471, 981
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	4 cut(s)	246, 362, 907, 1088
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	2 cut(s)	104, 287
TfiI	GAWTC	3 cut(s)	259, 468, 986
Tru1I	TTAA	5 cut(s)	426, 483, 518, 528, 1092
Tru9I	TTAA	5 cut(s)	426, 483, 518, 528, 1092
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	3 cut(s)	491, 971, 1019
TspDTI	ATGAA	4 cut(s)	210, 288, 644, 957
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	970
Van91I	CCANNNNNTGG	1 cut(s)	695
VpaK11BI	GGWCC	4 cut(s)	614, 656, 698, 854
XapI	RAATTY	2 cut(s)	362, 1088
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	3 cut(s)	330, 585, 801
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.