Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005692

Physical Location & Seq

Genomic Coordinates Forward (+)

29130145 .. 29132948

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCGCACCCTCTCTCTCTCTCTACACCGCCACCCCTCTCCTCCCATTCCCACACTTCAACTCCCGCCATGTCCTCCGTCGCATTCCGCAACCCCGCCATTACTTCCCGCGTTCTTCCTTTCTTCTCCGCCAGATTCTCCCTCTACCACTCCTCCTCCATCTCACTCAAGTCCCTCAGCTCCGCTCCCCTCATTTCCCACCTCTTCCTAAACCCCAAACTCCGCTCGCCCCCTCACGCGCTAACCCGAGCATACAGCCCGGCCACCGCGCCCAAATGCCTCGCCTCCGACCCGGAGCAACTGAAGCTCGCCAGAGAGGACATCAAAGAGCTCCTCAAGATCACTTTTAGCCACCCGATTCTCGTTCGGTTGGGGTGGCACGATACTGGAACTTACAACAAGAACATTGACGAGAGTCTTGTGAATGCATTGAAGCTCGTTCAGCAGATAAAAGGCAAGTACCCTGGTGTCTCATACGCCGACTTGTTCCAATTGGCCAGTGCTACTGCGGTGGAGGAGGCAGGGGGCCCGAAGATTCCAATGAAGTATGGGAGAGTTGAGGTCTCAGGACCTGAGCAATGCCCGGAAGAAGGGGAGGCTTCCTGGTTAGAAATAGTTGCATTGTCTGGGGCACACACTCTTGGGAGGTCCAGACCTGATCGCAGTGGTTGGGGCAAGCCAGAGACAAAGTACACAAAAGACGGGCCAGGGGCACCAGGAGGACAATCGTCGACAGCACAATGGTTGAAGTTTGATAATTCCTGCTTCAAGGATATCAAGGAAAAGAGGGATGAATATCTACTGGTGTTGCCAACTGATGCAGCTATTTTTGAAGATCCAGCATTCAAGATATATGCTGAGAAATATACTGAAGACCAAGAAGCCTCCTTCAAGGATTATGCTGAAGCTTATGCTAAAGTCAGCAACCTGGGGGCCAAATTTGACCCTCCAGAGGGTATTGTGATCGATGATGGTCCTTTGCAGCCTATACCAGAAAAGTTTGTGGCAGCCAAATACTCGTCTGGCAAGGGAGAGCTGTCAGATAATATGAAGCAGAAATTCGGGCGGAGTATCAAGCAGCTGGTGGAAGTCCAGATAAGCCTCTACAGTCTAACTATTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010019 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0023052 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0070887 GO:0071588 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

375

Amino Acids

40.96

Weight (kDa)

7.69

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77490 AT1G77490 AT4G08390 AT4G08390 AT4G08390 AT4G08390 AT4G08390
fragaria_vesca	FvH4_2g27340 FvH4_2g27340 FvH4_2g27340 FvH4_2g27340
malus_domestica	MD00G1029300.v1.1
prunus_persica	Prupe.1G493900_v2.0.a1 Prupe.1G493900_v2.0.a1
pyrus_communis	pycom15g31010
rosa_chinensis	RchiOBHm_Chr6g0296151
rosa_laevigata	RLG00000011722
rosa_multiflora	Rmu_sc0000486.1_g000008 Rmu_sc0012446.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171790 Rroxscaffold_7G00178270
rosa_rugosa	Rorug06G0258900.1 Rorug06G0259000
rosa_samantha	Rh6AG371200 Rh6BG379100 Rh6CG384400 Rh6DG371700
rosa_wichuraiana	Rw6G032330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	712
AccBSI	CCGCTC	2 cut(s)	185, 225
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	3 cut(s)	111, 239, 269
AclWI	GGATC	1 cut(s)	830
AcoI	YGGCCR	2 cut(s)	261, 495
AcsI	RAATTY	2 cut(s)	938, 1058
AcuI	CTGAAG	3 cut(s)	323, 891, 924
AfaI	GTAC	2 cut(s)	461, 692
AfiI	CCNNNNNNNGG	3 cut(s)	590, 952, 953
AgsI	TTSAA	7 cut(s)	60, 433, 748, 769, 833, 847, 892
AjnI	CCWGG	5 cut(s)	463, 602, 706, 715, 927
AluBI	AGCT	8 cut(s)	180, 307, 331, 436, 824, 908, 1036, 1081
AluI	AGCT	8 cut(s)	180, 307, 331, 436, 824, 908, 1036, 1081
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	3 cut(s)	475, 568, 677
AlwI	GGATC	1 cut(s)	830
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	5 cut(s)	261, 495, 526, 704, 933
ApaI	GGGCCC	1 cut(s)	530
ApeKI	GCWGC	4 cut(s)	821, 982, 1007, 1078
ApoI	RAATTY	2 cut(s)	938, 1058
AspLEI	GCGC	2 cut(s)	241, 271
AspS9I	GGNCC	7 cut(s)	526, 527, 569, 648, 704, 933, 974
AsuC2I	CCSGG	3 cut(s)	260, 293, 584
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	3 cut(s)	569, 648, 974
BaeGI	GKGCMC	3 cut(s)	530, 634, 715
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	2 cut(s)	333, 530
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	833, 994, 1019, 1090
BccI	CCATC	2 cut(s)	167, 965
BciT130I	CCWGG	5 cut(s)	465, 604, 708, 717, 929
BcnI	CCSGG	3 cut(s)	260, 293, 584
BcoDI	GTCTC	3 cut(s)	475, 568, 677
BfmI	CTRYAG	1 cut(s)	1105
BisI	GCNGC	4 cut(s)	822, 983, 1008, 1079
BlsI	GCNGC	4 cut(s)	823, 984, 1009, 1080
Bme1390I	CCNGG	8 cut(s)	260, 293, 465, 584, 604, 708, 717, 929
Bme18I	GGWCC	3 cut(s)	569, 648, 974
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	7 cut(s)	526, 527, 569, 648, 704, 933, 974
BmiI	GGNNCC	4 cut(s)	527, 528, 714, 934
BmrFI	CCNGG	8 cut(s)	260, 293, 465, 584, 604, 708, 717, 929
BmsI	GCATC	1 cut(s)	808
BoxI	GACNNNNGTC	2 cut(s)	414, 727
BpiI	GAAGAC	1 cut(s)	879
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	2 cut(s)	176, 573
BpuEI	CTTGAG	2 cut(s)	152, 320
BpuMI	CCSGG	3 cut(s)	260, 293, 584
Bsa29I	ATCGAT	1 cut(s)	966
BsaBI	GATNNNNATC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	463, 707, 928
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 137, 140, 167, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	590, 952, 953
Bse1I	ACTGG	3 cut(s)	391, 498, 807
Bse3DI	GCAATG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	5 cut(s)	465, 604, 708, 717, 929
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	3 cut(s)	463, 707, 928
BseGI	GGATG	1 cut(s)	796
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	3 cut(s)	590, 952, 953
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	4 cut(s)	190, 564, 579, 849
BseNI	ACTGG	3 cut(s)	391, 498, 807
BseRI	GAGGAG	5 cut(s)	31, 142, 145, 323, 530
BseSI	GKGCMC	3 cut(s)	530, 634, 715
BseXI	GCAGC	4 cut(s)	833, 994, 1019, 1090
Bsh1236I	CGCG	3 cut(s)	111, 239, 269
BshFI	GGCC	5 cut(s)	263, 497, 528, 706, 935
BshNI	GGYRCC	1 cut(s)	712
BshVI	ATCGAT	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	260, 293, 584
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	590, 952, 953
BsmAI	GTCTC	3 cut(s)	475, 568, 677
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	3 cut(s)	83, 430, 842
BsnI	GGCC	5 cut(s)	263, 497, 528, 706, 935
Bso31I	GGTCTC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	246
Bsp120I	GGGCCC	1 cut(s)	526
Bsp1286I	GDGCHC	4 cut(s)	333, 530, 634, 715
Bsp143I	GATC	4 cut(s)	339, 658, 835, 963
BspANI	GGCC	5 cut(s)	263, 497, 528, 706, 935
BspCNI	CTCAG	4 cut(s)	189, 565, 578, 850
BspDI	ATCGAT	1 cut(s)	966
BspFNI	CGCG	3 cut(s)	111, 239, 269
BspLI	GGNNCC	4 cut(s)	527, 528, 714, 934
BspPI	GGATC	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	568
BsrBI	CCGCTC	2 cut(s)	185, 225
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	391, 498, 807
BssECI	CCNNGG	3 cut(s)	463, 707, 928
BssMI	GATC	4 cut(s)	339, 658, 835, 963
Bst2UI	CCWGG	5 cut(s)	465, 604, 708, 717, 929
Bst4CI	ACNGT	1 cut(s)	1109
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	227, 309, 677
BstDEI	CTNAG	4 cut(s)	176, 565, 573, 858
BstF5I	GGATG	1 cut(s)	796
BstFNI	CGCG	3 cut(s)	111, 239, 269
BstHHI	GCGC	2 cut(s)	241, 271
BstKTI	GATC	4 cut(s)	342, 661, 838, 966
BstMAI	GTCTC	3 cut(s)	475, 568, 677
BstMBI	GATC	4 cut(s)	339, 658, 835, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 442
BstNI	CCWGG	5 cut(s)	465, 604, 708, 717, 929
BstPAI	GACNNNNGTC	2 cut(s)	414, 727
BstSCI	CCNGG	8 cut(s)	258, 291, 463, 582, 602, 706, 715, 927
BstSFI	CTRYAG	1 cut(s)	1105
BstSLI	GKGCMC	3 cut(s)	530, 634, 715
BstUI	CGCG	3 cut(s)	111, 239, 269
BstV1I	GCAGC	4 cut(s)	833, 994, 1019, 1090
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
Bsu15I	ATCGAT	1 cut(s)	966
BsuRI	GGCC	5 cut(s)	263, 497, 528, 706, 935
BsuTUI	ATCGAT	1 cut(s)	966
BtsCI	GGATG	1 cut(s)	796
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	505, 670
Cac8I	GCNNGC	3 cut(s)	227, 309, 677
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	2 cut(s)	241, 271
Cfr13I	GGNCC	7 cut(s)	526, 527, 569, 648, 704, 933, 974
ClaI	ATCGAT	1 cut(s)	966
Csp6I	GTAC	2 cut(s)	460, 691
CviAII	CATG	1 cut(s)	70
CviQI	GTAC	2 cut(s)	460, 691
DdeI	CTNAG	4 cut(s)	176, 565, 573, 858
DpnI	GATC	4 cut(s)	341, 660, 837, 965
DpnII	GATC	4 cut(s)	339, 658, 835, 963
EaeI	YGGCCR	2 cut(s)	261, 495
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	118, 1081
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	333, 530
Eco31I	GGTCTC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	569, 648, 974
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	3 cut(s)	323, 891, 924
Eco88I	CYCGRG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	2 cut(s)	526, 569
EcoRII	CCWGG	5 cut(s)	463, 602, 706, 715, 927
EcoRV	GATATC	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	333, 530
FaeI	CATG	1 cut(s)	73
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	69
FauI	CCCGC	3 cut(s)	73, 103, 116
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	4 cut(s)	822, 983, 1008, 1079
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	2 cut(s)	333, 530
Fsp4HI	GCNGC	4 cut(s)	822, 983, 1008, 1079
GlaI	GCGC	2 cut(s)	240, 270
GluI	GCNGC	4 cut(s)	822, 983, 1008, 1079
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	5 cut(s)	263, 497, 528, 706, 935
HapII	CCGG	3 cut(s)	260, 293, 584
HhaI	GCGC	2 cut(s)	241, 271
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	2 cut(s)	239, 269
HinP1I	GCGC	2 cut(s)	239, 269
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	906
HinfI	GANTC	4 cut(s)	135, 358, 415, 535
HpaII	CCGG	3 cut(s)	260, 293, 584
Hpy166II	GTNNAC	2 cut(s)	693, 732
Hpy188I	TCNGA	2 cut(s)	289, 1042
Hpy188III	TCNNGA	6 cut(s)	337, 567, 651, 847, 950, 1093
Hpy8I	GTNNAC	2 cut(s)	693, 732
Hpy99I	CGWCG	2 cut(s)	83, 733
HpyAV	CCTTC	2 cut(s)	584, 898
HpyCH4III	ACNGT	1 cut(s)	1109
HpyCH4V	TGCA	4 cut(s)	428, 620, 821, 982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 442
HpyF3I	CTNAG	4 cut(s)	176, 565, 573, 858
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	2 cut(s)	239, 269
Kzo9I	GATC	4 cut(s)	339, 658, 835, 963
LmnI	GCTCC	4 cut(s)	185, 190, 295, 336
Lsp1109I	GCAGC	4 cut(s)	833, 994, 1019, 1090
LweI	GCATC	1 cut(s)	808
MalI	GATC	4 cut(s)	341, 660, 837, 965
MbiI	CCGCTC	2 cut(s)	185, 225
MboI	GATC	4 cut(s)	339, 658, 835, 963
MboII	GAAGA	7 cut(s)	107, 115, 196, 544, 599, 845, 884
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	4 cut(s)	333, 530, 634, 715
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	4 cut(s)	491, 757, 938, 1058
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	1081
MspI	CCGG	3 cut(s)	260, 293, 584
MspR9I	CCNGG	8 cut(s)	260, 293, 465, 584, 604, 708, 717, 929
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	3 cut(s)	83, 430, 842
MvaI	CCWGG	5 cut(s)	465, 604, 708, 717, 929
MvnI	CGCG	3 cut(s)	111, 239, 269
MwoI	GCNNNNNNNGC	2 cut(s)	304, 442
NciI	CCSGG	3 cut(s)	260, 293, 584
NdeII	GATC	4 cut(s)	339, 658, 835, 963
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	4 cut(s)	527, 528, 714, 934
NsiI	ATGCAT	1 cut(s)	430
PctI	GAATGC	3 cut(s)	83, 430, 842
PfeI	GAWTC	3 cut(s)	135, 358, 535
PkrI	GCNGC	4 cut(s)	823, 984, 1009, 1080
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PpuMI	RGGWCCY	1 cut(s)	569
PshAI	GACNNNNGTC	2 cut(s)	414, 727
Psp124BI	GAGCTC	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	5 cut(s)	463, 602, 706, 715, 927
PspGI	CCWGG	5 cut(s)	463, 602, 706, 715, 927
PspN4I	GGNNCC	4 cut(s)	527, 528, 714, 934
PspOMI	GGGCCC	1 cut(s)	526
PspPI	GGNCC	7 cut(s)	526, 527, 569, 648, 704, 933, 974
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	2 cut(s)	461, 692
RsaNI	GTAC	2 cut(s)	460, 691
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	730
SatI	GCNGC	4 cut(s)	822, 983, 1008, 1079
Sau3AI	GATC	4 cut(s)	339, 658, 835, 963
Sau96I	GGNCC	7 cut(s)	526, 527, 569, 648, 704, 933, 974
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	8 cut(s)	260, 293, 465, 584, 604, 708, 717, 929
SduI	GDGCHC	4 cut(s)	333, 530, 634, 715
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	1 cut(s)	1105
SinI	GGWCC	3 cut(s)	569, 648, 974
SmlI	CTYRAG	2 cut(s)	167, 335
SmoI	CTYRAG	2 cut(s)	167, 335
Sse9I	AATT	4 cut(s)	491, 757, 938, 1058
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	8 cut(s)	258, 291, 463, 582, 602, 706, 715, 927
TaaI	ACNGT	1 cut(s)	1109
TaqI	TCGA	2 cut(s)	731, 966
TasI	AATT	4 cut(s)	491, 757, 938, 1058
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	135, 358, 535
TscAI	CASTG	2 cut(s)	505, 670
TseI	GCWGC	4 cut(s)	821, 982, 1007, 1078
TspDTI	ATGAA	3 cut(s)	557, 807, 1064
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	505, 670
VpaK11BI	GGWCC	3 cut(s)	569, 648, 974
XapI	RAATTY	2 cut(s)	938, 1058
XmiI	GTMKAC	1 cut(s)	731
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.