Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Reverse (-)

29200417 .. 29203418

Gene Structure 3002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCGGCAGAGAAAATAGAGACAGTGGTCGCAGGGAATTACTTAGAAATGGAGAGGGAAGAAGAAAACATAAGTGGTAACAAGAAATCTTCAACTAAAACAAAACTCTCTAATTTCTTCTGGCATGGTGGTTCTGTCTACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGTGGCACAAGTTCTGTTGACATTACCATACTCGTTCTCACAACTTGGGATGATGTCGGGAATTTTGTTTCAACTCTTTTATGGATTAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTCTTTACGTTGAATATCGAACTCGTAAAGAACGAGAAAAATTCGATTTCCGTAACCACGTTATTCAGTGGTTTGAGGTGTTAGATGGATTGTTGGGGAAACATTGGAGGAACCTTGGATTGATCTTTAACTGCACTTTTCTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTGTGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACATATTTGGGGCGTGCTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACTCCTTCATGGCCAGGCTGAGGATGTGAAACACTCTGGTCCAACCACAATGGTGCTTTACTTCACCGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATAATGCACGCTATGTGGAAACCGCAAAAGTTCAAGGCGATATATCTACTAGCGACCATATATGTACTAACGCTAACGCTACCATCCGCGTCTGCGGTTTATTGGGCGTTTGGCGATAAGCTACTAACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTGGTTTTAGAGATACCGCAGTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCGTCTACACCGTTATATTTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGCATGTTCAAAAGAGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTTTTTCGGACCAATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTCTACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGAATGCGGTGGAGAGGCCACCGAGAGTGGTAGGAGGATGGATGGGGACTTACTGCATAAACATATTTGTGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTCAACTTTGTTCGCCAGATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCCTCACAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

470

Amino Acids

53.3

Weight (kDa)

9.08

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	42 - 432	1.2e-78	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
AccI	GTMKAC	3 cut(s)	138, 983, 1161
AccII	CGCG	3 cut(s)	845, 980, 1130
AciI	CCGC	9 cut(s)	5, 779, 843, 851, 933, 1128, 1130, 1173, 1223
AclI	AACGTT	1 cut(s)	968
AclWI	GGATC	3 cut(s)	448, 934, 1144
AcoI	YGGCCR	2 cut(s)	649, 736
AcsI	RAATTY	3 cut(s)	231, 329, 576
AfaI	GTAC	2 cut(s)	822, 1077
AfiI	CCNNNNNNNGG	4 cut(s)	658, 917, 1112, 1177
AgsI	TTSAA	7 cut(s)	93, 165, 242, 302, 790, 1045, 1212
AjnI	CCWGG	1 cut(s)	651
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	3 cut(s)	454, 877, 1152
AluI	AGCT	3 cut(s)	454, 877, 1152
Alw26I	GTCTC	3 cut(s)	14, 1022, 1376
AlwI	GGATC	3 cut(s)	448, 934, 1144
AoxI	GGCC	3 cut(s)	649, 736, 1232
ApoI	RAATTY	3 cut(s)	231, 329, 576
AseI	ATTAAT	2 cut(s)	257, 486
AspLEI	GCGC	1 cut(s)	898
AspS9I	GGNCC	2 cut(s)	677, 1115
AsuHPI	GGTGA	2 cut(s)	619, 694
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	677, 1115
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BalI	TGGCCA	2 cut(s)	651, 738
BbvCI	CCTCAGC	1 cut(s)	657
BccI	CCATC	5 cut(s)	368, 847, 1248, 1252, 1320
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	14, 1022, 1376
BfaI	CTAG	3 cut(s)	468, 806, 1059
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	2 cut(s)	677, 1115
BmgT120I	GGNCC	2 cut(s)	677, 1115
BmiI	GGNNCC	2 cut(s)	401, 709
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	1376
BsaJI	CCNNGG	5 cut(s)	403, 589, 1053, 1068, 1128
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	2 cut(s)	1183, 1213
Bsc4I	CCNNNNNNNGG	4 cut(s)	658, 917, 1112, 1177
Bse1I	ACTGG	1 cut(s)	922
Bse3DI	GCAATG	2 cut(s)	456, 630
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	5 cut(s)	403, 589, 1053, 1068, 1128
BseGI	GGATG	7 cut(s)	225, 667, 839, 1167, 1259, 1263, 1331
BseLI	CCNNNNNNNGG	4 cut(s)	658, 917, 1112, 1177
BseMI	GCAATG	2 cut(s)	456, 630
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	922
BseRI	GAGGAG	1 cut(s)	1389
BsgI	GTGCAG	1 cut(s)	406
Bsh1236I	CGCG	3 cut(s)	845, 980, 1130
Bsh1285I	CGRYCG	1 cut(s)	1134
BshFI	GGCC	3 cut(s)	651, 738, 1234
BsiEI	CGRYCG	1 cut(s)	1134
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	1 cut(s)	1276
BslI	CCNNNNNNNGG	4 cut(s)	658, 917, 1112, 1177
BsmAI	GTCTC	3 cut(s)	14, 1022, 1376
BsmBI	CGTCTC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	1276
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	3 cut(s)	651, 738, 1234
Bso31I	GGTCTC	1 cut(s)	1376
Bsp143I	GATC	5 cut(s)	411, 440, 939, 1136, 1356
Bsp19I	CCATGG	1 cut(s)	1053
BspACI	CCGC	9 cut(s)	5, 779, 843, 851, 933, 1128, 1130, 1173, 1223
BspANI	GGCC	3 cut(s)	651, 738, 1234
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	3 cut(s)	845, 980, 1130
BspLI	GGNNCC	2 cut(s)	401, 709
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	448, 934, 1144
BspQI	GCTCTTC	1 cut(s)	1028
BspTNI	GGTCTC	1 cut(s)	1376
BsrDI	GCAATG	2 cut(s)	456, 630
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	5 cut(s)	403, 589, 1053, 1068, 1128
BssMI	GATC	5 cut(s)	411, 440, 939, 1136, 1356
BssT1I	CCWWGG	2 cut(s)	403, 1053
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	25, 547, 751, 990, 1159
Bst6I	CTCTTC	2 cut(s)	909, 1028
BstC8I	GCNNGC	3 cut(s)	469, 532, 765
BstDEI	CTNAG	5 cut(s)	43, 657, 912, 1090, 1144
BstDSI	CCRYGG	3 cut(s)	1053, 1068, 1128
BstF5I	GGATG	7 cut(s)	225, 667, 839, 1167, 1259, 1263, 1331
BstFNI	CGCG	3 cut(s)	845, 980, 1130
BstHHI	GCGC	1 cut(s)	898
BstKTI	GATC	5 cut(s)	414, 443, 942, 1139, 1359
BstMAI	GTCTC	3 cut(s)	14, 1022, 1376
BstMBI	GATC	5 cut(s)	411, 440, 939, 1136, 1356
BstMCI	CGRYCG	1 cut(s)	1134
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 1392
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	1042
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	651
BstUI	CGCG	3 cut(s)	845, 980, 1130
BstX2I	RGATCY	2 cut(s)	440, 1136
BstYI	RGATCY	2 cut(s)	440, 1136
BsuRI	GGCC	3 cut(s)	651, 738, 1234
BtgI	CCRYGG	3 cut(s)	1053, 1068, 1128
BtsCI	GGATG	7 cut(s)	225, 667, 839, 1167, 1259, 1263, 1331
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	5 cut(s)	30, 362, 756, 942, 1155
Cac8I	GCNNGC	3 cut(s)	469, 532, 765
CfoI	GCGC	1 cut(s)	898
Cfr13I	GGNCC	2 cut(s)	677, 1115
Cfr42I	CCGCGG	1 cut(s)	1131
CseI	GACGC	2 cut(s)	834, 969
Csp6I	GTAC	2 cut(s)	821, 1076
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	8 cut(s)	125, 510, 647, 946, 1025, 1039, 1054, 1410
CviQI	GTAC	2 cut(s)	821, 1076
DdeI	CTNAG	5 cut(s)	43, 657, 912, 1090, 1144
DpnI	GATC	5 cut(s)	413, 442, 941, 1138, 1358
DpnII	GATC	5 cut(s)	411, 440, 939, 1136, 1356
EaeI	YGGCCR	2 cut(s)	649, 736
Eam1104I	CTCTTC	2 cut(s)	909, 1028
EarI	CTCTTC	2 cut(s)	909, 1028
Eco130I	CCWWGG	2 cut(s)	403, 1053
Eco31I	GGTCTC	1 cut(s)	1376
Eco47I	GGWCC	2 cut(s)	677, 1115
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	403, 1053
ErhI	CCWWGG	2 cut(s)	403, 1053
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	8 cut(s)	128, 513, 650, 949, 1028, 1042, 1057, 1413
FaqI	GGGAC	1 cut(s)	1276
FatI	CATG	8 cut(s)	124, 509, 646, 945, 1024, 1038, 1053, 1409
FauI	CCCGC	1 cut(s)	1180
FauNDI	CATATG	2 cut(s)	1082, 1185
FblI	GTMKAC	3 cut(s)	138, 983, 1161
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	7 cut(s)	232, 674, 826, 1154, 1266, 1270, 1338
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	468, 806, 1059
GlaI	GCGC	1 cut(s)	897
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	651, 738, 1234
HapII	CCGG	1 cut(s)	705
HgaI	GACGC	2 cut(s)	834, 969
HhaI	GCGC	1 cut(s)	898
Hin1II	CATG	8 cut(s)	128, 513, 650, 949, 1028, 1042, 1057, 1413
Hin6I	GCGC	1 cut(s)	896
HinP1I	GCGC	1 cut(s)	896
HincII	GTYRAC	2 cut(s)	189, 1342
HindII	GTYRAC	2 cut(s)	189, 1342
HinfI	GANTC	2 cut(s)	594, 975
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	2 cut(s)	619, 694
Hpy166II	GTNNAC	5 cut(s)	139, 189, 984, 1162, 1342
Hpy188I	TCNGA	4 cut(s)	593, 974, 1115, 1136
Hpy188III	TCNNGA	2 cut(s)	228, 1212
Hpy8I	GTNNAC	5 cut(s)	139, 189, 984, 1162, 1342
HpyAV	CCTTC	4 cut(s)	567, 571, 653, 1218
HpyCH4III	ACNGT	5 cut(s)	25, 547, 751, 990, 1159
HpyCH4IV	ACGT	3 cut(s)	297, 348, 968
HpyCH4V	TGCA	5 cut(s)	423, 539, 763, 1024, 1272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 1392
HpyF3I	CTNAG	5 cut(s)	43, 657, 912, 1090, 1144
HpySE526I	ACGT	3 cut(s)	297, 348, 968
Hsp92II	CATG	8 cut(s)	128, 513, 650, 949, 1028, 1042, 1057, 1413
HspAI	GCGC	1 cut(s)	896
KspI	CCGCGG	1 cut(s)	1131
Kzo9I	GATC	5 cut(s)	411, 440, 939, 1136, 1356
LguI	GCTCTTC	1 cut(s)	1028
LmnI	GCTCC	3 cut(s)	707, 1204, 1210
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	468, 806, 1059
MaeII	ACGT	3 cut(s)	297, 348, 968
MaeIII	GTNAC	3 cut(s)	77, 341, 745
MalI	GATC	5 cut(s)	413, 442, 941, 1138, 1358
MboI	GATC	5 cut(s)	411, 440, 939, 1136, 1356
MboII	GAAGA	8 cut(s)	71, 74, 81, 109, 422, 896, 1045, 1093
MflI	RGATCY	2 cut(s)	440, 1136
MlsI	TGGCCA	2 cut(s)	651, 738
MluNI	TGGCCA	2 cut(s)	651, 738
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	3 cut(s)	248, 704, 1114
Mox20I	TGGCCA	2 cut(s)	651, 738
MscI	TGGCCA	2 cut(s)	651, 738
MseI	TTAA	3 cut(s)	257, 417, 486
MslI	CAYNNNNRTG	3 cut(s)	689, 891, 1283
Msp20I	TGGCCA	2 cut(s)	651, 738
MspA1I	CMGCKG	1 cut(s)	1130
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	3 cut(s)	845, 980, 1130
MwoI	GCNNNNNNNGC	2 cut(s)	536, 1392
NcoI	CCATGG	1 cut(s)	1053
NdeI	CATATG	2 cut(s)	1082, 1185
NdeII	GATC	5 cut(s)	411, 440, 939, 1136, 1356
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	8 cut(s)	128, 513, 650, 949, 1028, 1042, 1057, 1413
NlaIV	GGNNCC	2 cut(s)	401, 709
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	1 cut(s)	1042
OliI	CACNNNNGTG	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	1028
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	1 cut(s)	1225
PfeI	GAWTC	1 cut(s)	975
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	26
PshBI	ATTAAT	2 cut(s)	257, 486
PsiI	TTATAA	1 cut(s)	965
Psp1406I	AACGTT	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	2 cut(s)	401, 709
PspPI	GGNCC	2 cut(s)	677, 1115
PsuI	RGATCY	2 cut(s)	440, 1136
RsaI	GTAC	2 cut(s)	822, 1077
RsaNI	GTAC	2 cut(s)	821, 1076
RseI	CAYNNNNRTG	3 cut(s)	689, 891, 1283
SacII	CCGCGG	1 cut(s)	1131
SapI	GCTCTTC	1 cut(s)	1028
SaqAI	TTAA	3 cut(s)	257, 417, 486
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	411, 440, 939, 1136, 1356
Sau96I	GGNCC	2 cut(s)	677, 1115
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	653
SfaNI	GCATC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	1131
SgrBI	CCGCGG	1 cut(s)	1131
SinI	GGWCC	2 cut(s)	677, 1115
SmiMI	CAYNNNNRTG	3 cut(s)	689, 891, 1283
SsiI	CCGC	9 cut(s)	5, 779, 843, 851, 933, 1128, 1130, 1173, 1223
SspMI	CTAG	3 cut(s)	468, 806, 1059
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	403, 1053
TaaI	ACNGT	5 cut(s)	25, 547, 751, 990, 1159
TaiI	ACGT	3 cut(s)	300, 351, 971
TaqI	TCGA	3 cut(s)	307, 333, 1359
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	975
Tru1I	TTAA	3 cut(s)	257, 417, 486
Tru9I	TTAA	3 cut(s)	257, 417, 486
TscAI	CASTG	5 cut(s)	30, 362, 756, 942, 1162
TseFI	GTSAC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	2 cut(s)	635, 944
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	5 cut(s)	30, 362, 756, 942, 1162
VpaK11BI	GGWCC	2 cut(s)	677, 1115
VspI	ATTAAT	2 cut(s)	257, 486
XapI	RAATTY	3 cut(s)	231, 329, 576
XceI	RCATGY	1 cut(s)	1042
XmiI	GTMKAC	3 cut(s)	138, 983, 1161
XspI	CTAG	3 cut(s)	468, 806, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.