Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Forward (+)

55671331 .. 55674172

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCTTCCGAGAAGGTGGAGACCATTATCGCCGGAAGCTACTTAGAGATGGAAAGGGAAGATGGTAGTGATTCGAAGGCTTCTGCTAAGAGCAAGCTATCGACGTTTTTCTGGCACGGCGGCTCCGCCTATGATGCATGGTTTAGCTGTGCTTCTAACCAGGTTGCACAAGTGCTTTTGACACTGCCATACTCATTTTCACAACTGGGTTTGTTGTCTGGGATTCTATTTCAGCTTTTTTATGGGTTGATGGGAAGCTGGACTGCTTACCTTATCAGTCTACTGTACGTTGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTCGATTTCAGAAACCACGTAATTCAGTGGTTTGAAGTTCTTGATGGACTTCTGGGAAAGCACTGGAGAAATTTAGGCCTCTTTTTCAACTGTACTTTTCTTCTGTTCGGATCTGTCATTCAGTTAATCGCTTGTGCAAGTAACATCTACTACATAAACGACAACCTCGACAAGAGAACTTGGACGTATATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCTTCATTTCATAATTACAGAATCTGGTCATTCTTGGGTCTTATTATGACTACTTATACTGCATGGTACCTCACCATTGCTTCCCTTATCCATGGACAGGTTGAAGGAGTGAAGCACTCAGGTCCAACCACGATGGTTCTCTACTTCACTGGAGCTACCAACATTCTCTACACTTTTGGTGGACATGCTGTTACAGTGGAGATTATGCATGCAATGTGGAAGCCACAGAAGTTCAAGATGATATACTTGATGGCAACACTTTATGTGCTGACCTTAACTTTACCATCAGCTTCTGCTGTGTACTGGGCTTTTGGAGACGCCCTCTTGACTCATTCGAACGCTCTCGCTTTGCTTCCGAGGACCAGATTTAGAGACACTGCTGTTGTTCTCATGCTTATTCACCAGTTTATAACATTTGGATTTGCTTGCACTCCATTGTACTTTGTGTGGGAGAAATTCCTGAGGGTTCATGAGACCAAGAGCATGTTAAAGAGGGCCCTTGCCAGACTTCCAGTGGTGATCCCAATTTGGTTCCTTGCAATCATATTCCCGTTCTTTGGCCCCATCAACTCAACTGTTGGATCTCTTCTTGTCAGCTTTACTGTCTATATAATCCCTGCTTTAGCTCACATGGTCACTTTTGCTTCTCCACAAGCCCGAGAGAATGCTGTGGAGAGACCACCATCATTCTTGGGAGGGTGGGCAGGATCATACACCATGAACATCTTTGTGGTGGTGTGGGTGGCAATAGTGGGATTTGGATTCGGAGGGTGGGCAAGCATGCTCAACTTTATACACCAAGTTAATACATTTGGTCTATTCACCAAGTGCTACCAATGCCCTCCCCACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

467

Amino Acids

52.86

Weight (kDa)

9.04

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 432	2.4e-80	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	956
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	2 cut(s)	120, 126
AclWI	GGATC	4 cut(s)	439, 1060, 1135, 1261
AcsI	RAATTY	2 cut(s)	391, 1001
AcyI	GRCGYC	1 cut(s)	864
AdeI	CACNNNGTG	1 cut(s)	1374
AfaI	GTAC	6 cut(s)	287, 296, 415, 614, 848, 986
AfiI	CCNNNNNNNGG	2 cut(s)	643, 1103
AgsI	TTSAA	4 cut(s)	356, 409, 650, 781
AjnI	CCWGG	1 cut(s)	159
Alw26I	GTCTC	5 cut(s)	14, 855, 912, 1013, 1216
AlwI	GGATC	4 cut(s)	439, 1060, 1135, 1261
AlwNI	CAGNNNCTG	2 cut(s)	570, 839
Ama87I	CYCGRG	1 cut(s)	1203
AoxI	GGCC	3 cut(s)	397, 1041, 1105
ApaI	GGGCCC	1 cut(s)	1045
ApoI	RAATTY	2 cut(s)	391, 1001
Asp718I	GGTACC	1 cut(s)	612
AspS9I	GGNCC	5 cut(s)	668, 906, 1041, 1042, 1106
AsuHPI	GGTGA	4 cut(s)	610, 938, 1075, 1360
AsuII	TTCGAA	2 cut(s)	74, 881
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	2 cut(s)	668, 906
AxyI	CCTNAGG	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	1045
BanI	GGYRCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	1045
BbsI	GAAGAC	1 cut(s)	532
BccI	CCATC	9 cut(s)	43, 56, 244, 359, 673, 790, 838, 1118, 1237
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	161
BcoDI	GTCTC	5 cut(s)	14, 855, 912, 1013, 1216
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	668, 906
BmeT110I	CYCGRG	1 cut(s)	1203
BmgT120I	GGNCC	5 cut(s)	668, 906, 1041, 1042, 1106
BmiI	GGNNCC	5 cut(s)	124, 614, 1043, 1079, 1108
BmrFI	CCNGG	1 cut(s)	161
BmrI	ACTGGG	2 cut(s)	215, 859
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	2 cut(s)	215, 859
BpiI	GAAGAC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	852, 884
BpmI	CTGGAG	2 cut(s)	406, 717
Bpu14I	TTCGAA	2 cut(s)	74, 881
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	3 cut(s)	14, 1013, 1216
BsaJI	CCNNGG	2 cut(s)	637, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 1103
Bse1I	ACTGG	6 cut(s)	210, 389, 700, 854, 949, 1058
Bse21I	CCTNAGG	1 cut(s)	1007
Bse3DI	GCAATG	2 cut(s)	621, 765
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	637, 902
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	2 cut(s)	643, 1103
BseMI	GCAATG	2 cut(s)	621, 765
BseMII	CTCAG	2 cut(s)	678, 998
BseNI	ACTGG	6 cut(s)	210, 389, 700, 854, 949, 1058
BseSI	GKGCMC	1 cut(s)	1045
BshFI	GGCC	3 cut(s)	399, 1043, 1107
BshNI	GGYRCC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	643, 1103
BsmAI	GTCTC	5 cut(s)	14, 855, 912, 1013, 1216
BsmBI	CGTCTC	1 cut(s)	855
BsmI	GAATGC	1 cut(s)	1216
BsnI	GGCC	3 cut(s)	399, 1043, 1107
Bso31I	GGTCTC	3 cut(s)	14, 1013, 1216
BsoBI	CYCGRG	1 cut(s)	1203
Bsp119I	TTCGAA	2 cut(s)	74, 881
Bsp120I	GGGCCC	1 cut(s)	1041
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp143I	GATC	4 cut(s)	431, 1065, 1127, 1253
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	2 cut(s)	120, 126
BspANI	GGCC	3 cut(s)	399, 1043, 1107
BspCNI	CTCAG	2 cut(s)	677, 999
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	5 cut(s)	124, 614, 1043, 1079, 1108
BspPI	GGATC	4 cut(s)	439, 1060, 1135, 1261
BspT104I	TTCGAA	2 cut(s)	74, 881
BspT107I	GGYRCC	1 cut(s)	612
BspTNI	GGTCTC	3 cut(s)	14, 1013, 1216
BsrDI	GCAATG	2 cut(s)	621, 765
BsrI	ACTGG	6 cut(s)	210, 389, 700, 854, 949, 1058
BssECI	CCNNGG	2 cut(s)	637, 902
BssMI	GATC	4 cut(s)	431, 1065, 1127, 1253
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	6 cut(s)	285, 413, 538, 742, 1123, 1150
Bst6I	CTCTTC	1 cut(s)	1137
BstACI	GRCGYC	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	2 cut(s)	74, 881
BstC8I	GCNNGC	6 cut(s)	95, 523, 756, 973, 1324, 1328
BstDEI	CTNAG	4 cut(s)	43, 87, 664, 1007
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	543
BstKTI	GATC	4 cut(s)	434, 1068, 1130, 1256
BstMAI	GTCTC	5 cut(s)	14, 855, 912, 1013, 1216
BstMBI	GATC	4 cut(s)	431, 1065, 1127, 1253
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 527, 1383
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	4 cut(s)	734, 758, 1033, 1330
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	1045
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	2 cut(s)	431, 1127
BstYI	RGATCY	2 cut(s)	431, 1127
Bsu36I	CCTNAGG	1 cut(s)	1007
BsuRI	GGCC	3 cut(s)	399, 1043, 1107
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	2 cut(s)	182, 921
BtsIMutI	CAGTG	7 cut(s)	182, 353, 382, 693, 747, 921, 1065
Cac8I	GCNNGC	6 cut(s)	95, 523, 756, 973, 1324, 1328
CaiI	CAGNNNCTG	2 cut(s)	570, 839
CciI	TCATGA	1 cut(s)	1015
Cfr13I	GGNCC	5 cut(s)	668, 906, 1041, 1042, 1106
CseI	GACGC	1 cut(s)	872
CsiI	ACCWGGT	1 cut(s)	159
Csp6I	GTAC	6 cut(s)	286, 295, 414, 613, 847, 985
CspCI	CAANNNNNGTGG	1 cut(s)	1382
CviQI	GTAC	6 cut(s)	286, 295, 414, 613, 847, 985
DdeI	CTNAG	4 cut(s)	43, 87, 664, 1007
DpnI	GATC	4 cut(s)	433, 1067, 1129, 1255
DpnII	GATC	4 cut(s)	431, 1065, 1127, 1253
DraIII	CACNNNGTG	1 cut(s)	1374
Eam1104I	CTCTTC	1 cut(s)	1137
EarI	CTCTTC	1 cut(s)	1137
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	637
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	1045
Eco31I	GGTCTC	3 cut(s)	14, 1013, 1216
Eco47I	GGWCC	2 cut(s)	668, 906
Eco81I	CCTNAGG	1 cut(s)	1007
Eco88I	CYCGRG	1 cut(s)	1203
EcoO109I	RGGNCCY	2 cut(s)	1041, 1042
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	139, 756
EcoT38I	GRGCYC	1 cut(s)	1045
ErhI	CCWWGG	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	1045
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	406, 717
HaeIII	GGCC	3 cut(s)	399, 1043, 1107
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	872
Hin1I	GRCGYC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	1398
HinfI	GANTC	5 cut(s)	71, 223, 567, 874, 1308
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	4 cut(s)	610, 938, 1075, 1360
Hpy166II	GTNNAC	3 cut(s)	281, 728, 847
Hpy188I	TCNGA	5 cut(s)	10, 332, 431, 903, 1313
Hpy188III	TCNNGA	5 cut(s)	362, 781, 871, 1006, 1016
Hpy8I	GTNNAC	3 cut(s)	281, 728, 847
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	7, 70, 558, 644
HpyCH4III	ACNGT	6 cut(s)	285, 413, 538, 742, 1123, 1150
HpyCH4IV	ACGT	4 cut(s)	104, 288, 339, 506
HpyCH4V	TGCA	8 cut(s)	137, 167, 458, 608, 754, 758, 975, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 527, 1383
HpyF3I	CTNAG	4 cut(s)	43, 87, 664, 1007
HpySE526I	ACGT	4 cut(s)	104, 288, 339, 506
Hsp92I	GRCGYC	1 cut(s)	864
KpnI	GGTACC	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	431, 1065, 1127, 1253
LmnI	GCTCC	3 cut(s)	128, 518, 698
LweI	GCATC	1 cut(s)	124
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	4 cut(s)	104, 288, 339, 506
MaeIII	GTNAC	3 cut(s)	461, 736, 1180
MalI	GATC	4 cut(s)	433, 1067, 1129, 1255
MboI	GATC	4 cut(s)	431, 1065, 1127, 1253
MboII	GAAGA	4 cut(s)	71, 413, 532, 1124
MflI	RGATCY	2 cut(s)	431, 1127
MhlI	GDGCHC	1 cut(s)	1045
MluCI	AATT	5 cut(s)	342, 391, 559, 1001, 1071
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	2 cut(s)	695, 1105
Mph1103I	ATGCAT	2 cut(s)	139, 756
MseI	TTAA	4 cut(s)	446, 821, 1034, 1350
MslI	CAYNNNNRTG	1 cut(s)	1274
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	1216
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	134, 527, 1383
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	4 cut(s)	431, 1065, 1127, 1253
NlaIV	GGNNCC	5 cut(s)	124, 614, 1043, 1079, 1108
NmuCI	GTSAC	1 cut(s)	1180
NsiI	ATGCAT	2 cut(s)	139, 756
NspI	RCATGY	4 cut(s)	734, 758, 1033, 1330
NspV	TTCGAA	2 cut(s)	74, 881
PaeI	GCATGC	2 cut(s)	758, 1330
PagI	TCATGA	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	1 cut(s)	1216
PfeI	GAWTC	4 cut(s)	71, 223, 567, 1308
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
Ppu21I	YACGTR	1 cut(s)	340
PsiI	TTATAA	1 cut(s)	956
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	5 cut(s)	124, 614, 1043, 1079, 1108
PspOMI	GGGCCC	1 cut(s)	1041
PspPI	GGNCC	5 cut(s)	668, 906, 1041, 1042, 1106
PstNI	CAGNNNCTG	2 cut(s)	570, 839
PsuI	RGATCY	2 cut(s)	431, 1127
RsaI	GTAC	6 cut(s)	287, 296, 415, 614, 848, 986
RsaNI	GTAC	6 cut(s)	286, 295, 414, 613, 847, 985
RseI	CAYNNNNRTG	1 cut(s)	1274
SaqAI	TTAA	4 cut(s)	446, 821, 1034, 1350
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	4 cut(s)	431, 1065, 1127, 1253
Sau96I	GGNCC	5 cut(s)	668, 906, 1041, 1042, 1106
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	1045
SexAI	ACCWGGT	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	2 cut(s)	74, 881
SinI	GGWCC	2 cut(s)	668, 906
SmiMI	CAYNNNNRTG	1 cut(s)	1274
SphI	GCATGC	2 cut(s)	758, 1330
Sse9I	AATT	5 cut(s)	342, 391, 559, 1001, 1071
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	2 cut(s)	120, 126
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	6 cut(s)	285, 413, 538, 742, 1123, 1150
TaiI	ACGT	4 cut(s)	107, 291, 342, 509
TaqI	TCGA	5 cut(s)	74, 101, 324, 489, 881
TasI	AATT	5 cut(s)	342, 391, 559, 1001, 1071
TatI	WGTACW	4 cut(s)	294, 413, 846, 984
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	71, 223, 567, 1308
Tru1I	TTAA	4 cut(s)	446, 821, 1034, 1350
Tru9I	TTAA	4 cut(s)	446, 821, 1034, 1350
TscAI	CASTG	7 cut(s)	189, 353, 389, 700, 747, 928, 1065
TseFI	GTSAC	1 cut(s)	1180
Tsp45I	GTSAC	1 cut(s)	1180
TspDTI	ATGAA	5 cut(s)	532, 540, 545, 1004, 1280
TspRI	CASTG	7 cut(s)	189, 353, 389, 700, 747, 928, 1065
VpaK11BI	GGWCC	2 cut(s)	668, 906
XapI	RAATTY	2 cut(s)	391, 1001
XceI	RCATGY	4 cut(s)	734, 758, 1033, 1330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	2 cut(s)	139, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.