Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Reverse (-)

42842120 .. 42845367

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1355600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTTCCGAGAAGGTTGAGACTGTTATAGCCGGAAACTACGTCGAAATGGAAAGGGAACAGAGTGATGCCCAGACAAGTGCTAAGAGCAAGCTATCAACATTTCTTTGGCATGGTGGCTCAGCATATGATGCATGGTTTAGCTGCGCTTCTAACCAGGTTGCTCAAGTGCTTCTCACACTGCCATACTCATTTTCCCAACTGGGTTTGTTATCTGGAATACTATTTCAGCTTTTTTATGGATTGATGGGAAGCTGGACTGCTTACCTCATCAGTTTACTATATGTCGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTGGATTTTAGGAACCATGTAATTCAGTGGTTTGAAGTTCTTGATGGGCTTTTGGGAAAACATTGGAGGAATGTAGGCCTTTTTTTCAACTGCACTTTTCTTCTCTTTGGATCTGTAATTCAGTTAATTGCCTGTGCAAGTAACATCTACTACATAAACGACAATCTCGACAAGAGAACTTGGACTTACATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCCTCATTCCATAATTACCGAATTTGGTCATTTTTGGGCCTTATTATGACTACTTACACTGCTTGGTATCTCACCATTGCTTCCCTTATCCATGGGCAGGTTGAGGGAGTGAAGCACTCTGGTCCAAGCACAATGGTTCTATACTTTACTGGGGCTACCAACATTCTCTACACATTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAAAAGTTCAAGTTAATATACTTGATGGCAACACTGTATGTGCTGACCTTAACCCTACCATCTGCGTCTGCTGTGTACTGGGCTTTCGGGGACAATCTCTTGACTCATTCCAATGCCCTAGCCATGCTTCCAAAGACTAGGTTTAGAGACACTGCAGTAGTCCTAATGCTCATTCATCAGTTTATCACATTTGGATTTGCTTGCACTCCTTTGTACTTTGTGTGGGAGAAATTCATTCAAATGCATGAGACCAAGAGCATGGTGAAGAGGGCACTGGCGAGGCTCCCAGTGGTGATCCCGATATGGTTCCTTGCCATCATTTTCCCATTCTTTGGGCCCATCAACTCAACTGTTGGATCTCTTCTTGTCAGCTTTACTGTCTACATAATTCCTGCTTTAGCTCACATGGTCACCTTTGCTTCTGCATCTGCTAGAGAGAATGCTGTGGAGAAACCACCATCATTCTTAGGAGGCTGGGCAGGATCATACACCATGAACATCTTTGTGGTGGTATGGGTTTTGATAGTGGGATTTGGGTTTGGAGGATGGGCAAGCATGCTCAACTTCATAAACCAAGTTAACACATTTGGTCTATTCACAAAGTGCTACCAATGCCCCCCTCACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

467

Amino Acids

52.7

Weight (kDa)

8.95

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	38 - 431	1.3e-80	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	1 cut(s)	1149
AclWI	GGATC	4 cut(s)	436, 1057, 1132, 1258
AcsI	RAATTY	2 cut(s)	564, 998
AdeI	CACNNNGTG	1 cut(s)	1371
AfaI	GTAC	3 cut(s)	293, 845, 983
AfiI	CCNNNNNNNGG	2 cut(s)	640, 1100
AgsI	TTSAA	4 cut(s)	353, 406, 778, 1007
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	8 cut(s)	94, 144, 232, 255, 518, 1140, 1169, 1397
AluI	AGCT	8 cut(s)	94, 144, 232, 255, 518, 1140, 1169, 1397
Alw26I	GTCTC	3 cut(s)	14, 909, 1010
AlwI	GGATC	4 cut(s)	436, 1057, 1132, 1258
AoxI	GGCC	3 cut(s)	394, 580, 1103
ApaI	GGGCCC	1 cut(s)	1107
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	564, 998
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	4 cut(s)	580, 665, 1103, 1104
AsuHPI	GGTGA	4 cut(s)	607, 1042, 1072, 1171
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	1042, 1107
BanII	GRGCYC	1 cut(s)	1107
BbsI	GAAGAC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	8 cut(s)	241, 356, 787, 835, 1091, 1115, 1234, 1308
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	14, 909, 1010
BfaI	CTAG	4 cut(s)	300, 887, 906, 1200
BfmI	CTRYAG	1 cut(s)	921
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	1 cut(s)	145
BlpI	GCTNAGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	580, 665, 1103, 1104
BmiI	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BmsI	GCATC	3 cut(s)	58, 121, 1202
BmuI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BpiI	GAAGAC	1 cut(s)	529
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 1100
Bse1I	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
Bse3DI	GCAATG	2 cut(s)	618, 762
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	2 cut(s)	540, 1319
BseLI	CCNNNNNNNGG	2 cut(s)	640, 1100
BseMI	GCAATG	2 cut(s)	618, 762
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
BseSI	GKGCMC	2 cut(s)	1042, 1107
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	1242
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	3 cut(s)	396, 582, 1105
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	640, 1100
BsmAI	GTCTC	3 cut(s)	14, 909, 1010
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	3 cut(s)	396, 582, 1105
Bso31I	GGTCTC	1 cut(s)	1010
Bsp120I	GGGCCC	1 cut(s)	1103
Bsp1286I	GDGCHC	2 cut(s)	1042, 1107
Bsp143I	GATC	4 cut(s)	428, 1062, 1124, 1250
Bsp1720I	GCTNAGC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	634
BspANI	GGCC	3 cut(s)	396, 582, 1105
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	4 cut(s)	436, 1057, 1132, 1258
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	618, 762
BsrI	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	4 cut(s)	428, 1062, 1124, 1250
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1147
Bst6I	CTCTTC	2 cut(s)	1028, 1134
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	6 cut(s)	92, 520, 753, 970, 1321, 1325
BstDEI	CTNAG	3 cut(s)	84, 121, 1234
BstDSI	CCRYGG	1 cut(s)	634
BstEII	GGTNACC	1 cut(s)	1177
BstF5I	GGATG	2 cut(s)	540, 1319
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	431, 1065, 1127, 1253
BstMAI	GTCTC	3 cut(s)	14, 909, 1010
BstMBI	GATC	4 cut(s)	428, 1062, 1124, 1250
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 524, 1380
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	3 cut(s)	731, 755, 1327
BstPI	GGTNACC	1 cut(s)	1177
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	2 cut(s)	1042, 1107
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	2 cut(s)	428, 1124
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	2 cut(s)	428, 1124
BsuRI	GGCC	3 cut(s)	396, 582, 1105
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	540, 1319
BtsI	GCAGTG	3 cut(s)	179, 600, 918
BtsIMutI	CAGTG	8 cut(s)	179, 350, 600, 744, 800, 918, 1040, 1062
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	6 cut(s)	92, 520, 753, 970, 1321, 1325
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	580, 665, 1103, 1104
CseI	GACGC	1 cut(s)	822
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	292, 844, 982
CviQI	GTAC	3 cut(s)	292, 844, 982
DdeI	CTNAG	3 cut(s)	84, 121, 1234
DpnI	GATC	4 cut(s)	430, 1064, 1126, 1252
DpnII	GATC	4 cut(s)	428, 1062, 1124, 1250
DraIII	CACNNNGTG	1 cut(s)	1371
Eam1104I	CTCTTC	2 cut(s)	1028, 1134
EarI	CTCTTC	2 cut(s)	1028, 1134
Eco130I	CCWWGG	1 cut(s)	634
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	1107
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	1177
EcoO65I	GGTNACC	1 cut(s)	1177
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	634
EcoT22I	ATGCAT	3 cut(s)	136, 753, 1014
EcoT38I	GRGCYC	1 cut(s)	1107
ErhI	CCWWGG	1 cut(s)	634
FaqI	GGGAC	1 cut(s)	872
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	527, 1326
FriOI	GRGCYC	1 cut(s)	1107
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	4 cut(s)	300, 887, 906, 1200
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	1246
HaeIII	GGCC	3 cut(s)	396, 582, 1105
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	822
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	1348
HindII	GTYRAC	1 cut(s)	1348
HindIII	AAGCTT	1 cut(s)	1395
HinfI	GANTC	1 cut(s)	871
HpaI	GTTAAC	1 cut(s)	1348
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	4 cut(s)	607, 1042, 1072, 1171
Hpy166II	GTNNAC	5 cut(s)	278, 725, 844, 1150, 1348
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	216, 359, 485, 868, 1066
Hpy8I	GTNNAC	5 cut(s)	278, 725, 844, 1150, 1348
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1147
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	9 cut(s)	134, 411, 455, 751, 755, 923, 972, 1012, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 524, 1380
HpyF3I	CTNAG	3 cut(s)	84, 121, 1234
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	4 cut(s)	428, 1062, 1124, 1250
LmnI	GCTCC	2 cut(s)	515, 1056
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	3 cut(s)	58, 121, 1202
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	4 cut(s)	300, 887, 906, 1200
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	458, 733, 1177
MalI	GATC	4 cut(s)	430, 1064, 1126, 1252
MboI	GATC	4 cut(s)	428, 1062, 1124, 1250
MboII	GAAGA	4 cut(s)	410, 529, 1045, 1121
MflI	RGATCY	2 cut(s)	428, 1124
MhlI	GDGCHC	2 cut(s)	1042, 1107
MluCI	AATT	8 cut(s)	339, 435, 444, 556, 564, 744, 998, 1155
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	1102
MnlI	CCTC	9 cut(s)	278, 378, 556, 640, 1029, 1041, 1232, 1304, 1398
Mph1103I	ATGCAT	3 cut(s)	136, 753, 1014
MseI	TTAA	4 cut(s)	443, 782, 818, 1347
MslI	CAYNNNNRTG	3 cut(s)	879, 1007, 1271
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	1213
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	131, 524, 1380
NcoI	CCATGG	1 cut(s)	634
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	4 cut(s)	428, 1062, 1124, 1250
NlaIV	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
NmuCI	GTSAC	1 cut(s)	1177
NsiI	ATGCAT	3 cut(s)	136, 753, 1014
NspI	RCATGY	3 cut(s)	731, 755, 1327
PaeI	GCATGC	2 cut(s)	755, 1327
PceI	AGGCCT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	1 cut(s)	1213
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	1177
PspFI	CCCAGC	1 cut(s)	1242
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
PspOMI	GGGCCC	1 cut(s)	1103
PspPI	GGNCC	4 cut(s)	580, 665, 1103, 1104
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	428, 1124
RsaI	GTAC	3 cut(s)	293, 845, 983
RsaNI	GTAC	3 cut(s)	292, 844, 982
RseI	CAYNNNNRTG	3 cut(s)	879, 1007, 1271
SaqAI	TTAA	4 cut(s)	443, 782, 818, 1347
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	4 cut(s)	428, 1062, 1124, 1250
Sau96I	GGNCC	4 cut(s)	580, 665, 1103, 1104
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	1042, 1107
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	3 cut(s)	58, 121, 1202
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	3 cut(s)	879, 1007, 1271
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	2 cut(s)	755, 1327
Sse9I	AATT	8 cut(s)	339, 435, 444, 556, 564, 744, 998, 1155
SseBI	AGGCCT	1 cut(s)	396
SspMI	CTAG	4 cut(s)	300, 887, 906, 1200
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1147
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	45, 288, 486
TasI	AATT	8 cut(s)	339, 435, 444, 556, 564, 744, 998, 1155
TatI	WGTACW	3 cut(s)	291, 843, 981
Tru1I	TTAA	4 cut(s)	443, 782, 818, 1347
Tru9I	TTAA	4 cut(s)	443, 782, 818, 1347
TscAI	CASTG	8 cut(s)	186, 350, 607, 744, 807, 925, 1047, 1062
TseFI	GTSAC	1 cut(s)	1177
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	1177
TspDTI	ATGAA	5 cut(s)	529, 932, 991, 1277, 1324
TspRI	CASTG	8 cut(s)	186, 350, 607, 744, 807, 925, 1047, 1062
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	564, 998
XceI	RCATGY	3 cut(s)	731, 755, 1327
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	4 cut(s)	300, 887, 906, 1200
Zsp2I	ATGCAT	3 cut(s)	136, 753, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.