Rorug06G0249000
MADS Family

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
39541161 .. 39544419
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0249000.1

Sequence Viewer

Length: 1158 bp
ATGGCTGCAGGGACAGATACCCCATCTTCACTTTCCATGTTAGATGGCAGTTACAGAAAGAACGTAACTGTTACAAGGGACGAGAAATCAAATACTTTTGAGAACATGAAGCAATCCAACATCGGCAAACCTCCTAGGCATCTTTCAGCTATTAGGAACTGTGTCAGCTCTGCCCAGTTGGCTCCGGCAACTGAAGTGGAGTTCGATAGTGGGATTGTTAGCTCAAAATCCTCGTCAGATAGTAATTCACCATTTGTACCTATTTTTCGGTCCGGAAGCTGTTCAGAGATTGGACCGAAACAATTTATGGAGGATGAGCATATCTGTATAGACAATATTCTTGAACATCTAGGATCTACTGCAGACTTTCCTTCTCCTGGAGCTTTCTATGGGGTTTTTGATGGCCATGGTGGTACAGATGCAGCTTCTTATATCAGAGAGAATATTTTGAGGTTTATAGTGGAGGATTCACATTTCCCTTTTTGTGCTAAGCAAGCTATTAAGAGTGCTTTTCTAAAGGCTGACCATGCTTTTGCTGATAATGGTACTCTTGATAGTTCCTCTGGTACCACTGCACTTACTGCCCTTATCTCTGGAAGGACGATGCTAGTTGCCAATGCTGGAGATTGTCGAGCTGTTCTGGGAAGAAGAGGCAGGGTGGTGGAACTGTCCAAAGACCATAAACCAAATTGTGCTTCAGAAAGAGTAAGAATTGAAGAACTGGGAGGCGTGGTGTATGATGGATACCTCAACGGCCAATTGTCAGTGGCACGAGCACTTGGAGATTGGCACATGAAAGGGTCCAAAGGTTCCTCTTGTCCCTTAAGTGCAGAACCGGAGCTTGAGGAGACAATTCTGAGTGAGGAAGATGAGTTCTTGATCATAGGTTGTGATGGACTGTGGGATGTGATGAGCAGCCAGTGTGCCGTCACAATTGCAAGGAAAGAATTGATGCTTCACAATGATCCTGAAAGATGCTCCAGAGAGCTAGTTAGAGAAGCTCTCAAGCGTGATACATGTGATAACTTGACCGTCGTAGTGGTATGCTTCTCCCCAGAACCACCGCCTCAGCTTGAGATCCCAAAGTTCAAGTTCAAGAGGAATATATCAGCAGAAGGTCTGAATCTTCTGCAGGAGGTACTAGATAGTAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

41.85

Weight (kDa)

5.12

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 92 - 342 1.9e-74 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 1064
AclWI GGATC 3 cut(s) 361, 959, 1072
AcoI YGGCCR 2 cut(s) 403, 754
AcuI CTGAAG 2 cut(s) 213, 681
AfaI GTAC 5 cut(s) 258, 415, 547, 568, 1140
AfiI CCNNNNNNNGG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 4 cut(s) 344, 716, 1090, 1096
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AloI GAACNNNNNNTCC 2 cut(s) 857, 889
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 3 cut(s) 361, 959, 1072
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 403, 754
ApeKI GCWGC 3 cut(s) 5, 422, 915
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 515, 547
Asp700I GAANNNNTTC 1 cut(s) 280
Asp718I GGTACC 1 cut(s) 566
AspA2I CCTAGG 1 cut(s) 134
AspS9I GGNCC 3 cut(s) 270, 293, 801
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 3 cut(s) 270, 293, 801
AvrII CCTAGG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 566
BauI CACGAG 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 778
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 434, 927
BccI CCATC 5 cut(s) 31, 38, 395, 734, 887
BceAI ACGGC 2 cut(s) 769, 911
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 737
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 5 cut(s) 135, 350, 608, 989, 1142
BfmI CTRYAG 3 cut(s) 6, 360, 1130
BfrI CTTAAG 1 cut(s) 823
BfuI GTATCC 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 3 cut(s) 6, 423, 916
BlnI CCTAGG 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 3 cut(s) 7, 424, 917
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 270, 293, 801
BmgT120I GGNCC 3 cut(s) 270, 293, 801
BmiI GGNNCC 4 cut(s) 183, 568, 802, 811
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 2 cut(s) 169, 731
BmsI GCATC 5 cut(s) 148, 409, 594, 942, 965
BmuI ACTGGG 2 cut(s) 169, 731
BplI GAGNNNNNCTC 2 cut(s) 987, 1019
BpmI CTGGAG 3 cut(s) 399, 642, 964
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 3 cut(s) 863, 989, 1094
BsaJI CCNNGG 2 cut(s) 134, 406
BsaWI WCCGGW 2 cut(s) 272, 835
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 175, 726, 919
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 134, 406
BseGI GGATG 2 cut(s) 319, 910
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 848, 1082
BseNI ACTGG 3 cut(s) 175, 726, 919
BseRI GAGGAG 1 cut(s) 860
BseXI GCAGC 2 cut(s) 434, 927
BsgI GTGCAG 2 cut(s) 558, 849
BshFI GGCC 2 cut(s) 405, 756
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 3 cut(s) 185, 273, 836
BslFI GGGAC 3 cut(s) 25, 92, 804
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 842
BsmFI GGGAC 3 cut(s) 25, 92, 804
BsnI GGCC 2 cut(s) 405, 756
Bsp1286I GDGCHC 1 cut(s) 778
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 4 cut(s) 353, 879, 964, 1077
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 1 cut(s) 1064
BspANI GGCC 2 cut(s) 405, 756
BspCNI CTCAG 2 cut(s) 849, 1081
BspEI TCCGGA 1 cut(s) 272
BspLI GGNNCC 4 cut(s) 183, 568, 802, 811
BspMAI CTGCAG 3 cut(s) 10, 364, 1134
BspPI GGATC 3 cut(s) 361, 959, 1072
BspT107I GGYRCC 1 cut(s) 566
BspTI CTTAAG 1 cut(s) 823
BsrI ACTGG 3 cut(s) 175, 726, 919
BssECI CCNNGG 2 cut(s) 134, 406
BssMI GATC 4 cut(s) 353, 879, 964, 1077
BssSI CACGAG 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 134, 406
Bst2BI CACGAG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 5 cut(s) 70, 161, 669, 900, 1033
Bst6I CTCTTC 1 cut(s) 643
BstAFI CTTAAG 1 cut(s) 823
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 489, 857, 1068
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 319, 910
BstKTI GATC 4 cut(s) 356, 882, 967, 1080
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 4 cut(s) 353, 879, 964, 1077
BstMWI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 1020
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 3 cut(s) 6, 360, 1130
BstV1I GCAGC 2 cut(s) 434, 927
BstX2I RGATCY 2 cut(s) 353, 1077
BstYI RGATCY 2 cut(s) 353, 1077
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 2 cut(s) 405, 756
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 319, 910
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 570, 771, 926
Cac8I GCNNGC 1 cut(s) 495
Cfr13I GGNCC 3 cut(s) 270, 293, 801
CpoI CGGWCCG 1 cut(s) 270
Csp6I GTAC 5 cut(s) 257, 414, 546, 567, 1139
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 6 cut(s) 37, 106, 407, 527, 793, 1017
CviQI GTAC 5 cut(s) 257, 414, 546, 567, 1139
DdeI CTNAG 3 cut(s) 489, 857, 1068
DpnI GATC 4 cut(s) 355, 881, 966, 1079
DpnII GATC 4 cut(s) 353, 879, 964, 1077
EaeI YGGCCR 2 cut(s) 403, 754
Eam1104I CTCTTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 134, 406
Eco47I GGWCC 3 cut(s) 270, 293, 801
Eco57I CTGAAG 2 cut(s) 213, 681
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 134, 406
ErhI CCWWGG 2 cut(s) 134, 406
FaeI CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
FaqI GGGAC 3 cut(s) 25, 92, 804
FatI CATG 6 cut(s) 36, 105, 406, 526, 792, 1016
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 6, 423, 916
FokI GGATG 2 cut(s) 326, 917
Fsp4HI GCNGC 3 cut(s) 6, 423, 916
FspBI CTAG 5 cut(s) 135, 350, 608, 989, 1142
GluI GCNGC 3 cut(s) 6, 423, 916
GsuI CTGGAG 3 cut(s) 399, 642, 964
HaeIII GGCC 2 cut(s) 405, 756
HapII CCGG 3 cut(s) 185, 273, 836
Hin1II CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
HinfI GANTC 2 cut(s) 467, 1123
HpaII CCGG 3 cut(s) 185, 273, 836
HphI GGTGA 1 cut(s) 240
Hpy188I TCNGA 6 cut(s) 238, 286, 437, 700, 858, 1122
Hpy188III TCNNGA 8 cut(s) 273, 341, 551, 594, 877, 968, 981, 1096
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 3 cut(s) 381, 591, 1109
HpyCH4III ACNGT 5 cut(s) 70, 161, 669, 900, 1033
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 8, 362, 422, 575, 830, 938, 1132
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
HpyF3I CTNAG 3 cut(s) 489, 857, 1068
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
Kpn2I TCCGGA 1 cut(s) 272
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 4 cut(s) 353, 879, 964, 1077
LmnI GCTCC 4 cut(s) 187, 380, 838, 983
Lsp1109I GCAGC 2 cut(s) 434, 927
LweI GCATC 5 cut(s) 148, 409, 594, 942, 965
MaeI CTAG 5 cut(s) 135, 350, 608, 989, 1142
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 4 cut(s) 50, 64, 70, 928
MalI GATC 4 cut(s) 355, 881, 966, 1079
MboI GATC 4 cut(s) 353, 879, 964, 1077
MboII GAAGA 6 cut(s) 18, 657, 660, 728, 878, 1118
MfeI CAATTG 2 cut(s) 758, 933
MflI RGATCY 2 cut(s) 353, 1077
MhlI GDGCHC 1 cut(s) 778
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
MluNI TGGCCA 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 405
MroI TCCGGA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 280
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 501, 824
Msp20I TGGCCA 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 823
MspI CCGG 3 cut(s) 185, 273, 836
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 2 cut(s) 758, 933
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 179, 494, 527, 581
NcoI CCATGG 1 cut(s) 406
NdeII GATC 4 cut(s) 353, 879, 964, 1077
NlaIII CATG 6 cut(s) 40, 109, 410, 530, 796, 1020
NlaIV GGNNCC 4 cut(s) 183, 568, 802, 811
NmuCI GTSAC 1 cut(s) 928
NspI RCATGY 1 cut(s) 1020
PciI ACATGT 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 467, 1123
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 3 cut(s) 7, 424, 917
PscI ACATGT 1 cut(s) 1016
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 183, 568, 802, 811
PspPI GGNCC 3 cut(s) 270, 293, 801
PstI CTGCAG 3 cut(s) 10, 364, 1134
PsuI RGATCY 2 cut(s) 353, 1077
RsaI GTAC 5 cut(s) 258, 415, 547, 568, 1140
RsaNI GTAC 5 cut(s) 257, 414, 546, 567, 1139
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 501, 824
SatI GCNGC 3 cut(s) 6, 423, 916
Sau3AI GATC 4 cut(s) 353, 879, 964, 1077
Sau96I GGNCC 3 cut(s) 270, 293, 801
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 5 cut(s) 148, 409, 594, 942, 965
SfcI CTRYAG 3 cut(s) 6, 360, 1130
SinI GGWCC 3 cut(s) 270, 293, 801
SmlI CTYRAG 4 cut(s) 823, 842, 1004, 1073
SmoI CTYRAG 4 cut(s) 823, 842, 1004, 1073
Sse9I AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
SsiI CCGC 1 cut(s) 1064
SspI AATATT 2 cut(s) 337, 445
SspMI CTAG 5 cut(s) 135, 350, 608, 989, 1142
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 2 cut(s) 134, 406
TaaI ACNGT 5 cut(s) 70, 161, 669, 900, 1033
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 204, 631
TaqII GACCGA 2 cut(s) 258, 310
TasI AATT 8 cut(s) 244, 302, 688, 711, 758, 852, 933, 947
TfiI GAWTC 2 cut(s) 467, 1123
Tru1I TTAA 2 cut(s) 501, 824
Tru9I TTAA 2 cut(s) 501, 824
TscAI CASTG 3 cut(s) 577, 771, 926
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 3 cut(s) 5, 422, 915
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 2 cut(s) 122, 809
TspRI CASTG 3 cut(s) 577, 771, 926
Vha464I CTTAAG 1 cut(s) 823
VpaK11BI GGWCC 3 cut(s) 270, 293, 801
XceI RCATGY 1 cut(s) 1020
XmaJI CCTAGG 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 5 cut(s) 135, 350, 608, 989, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.