Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

5075371 .. 5076246

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTAGAAAGAAGGTGAAACTTACCTATATCACTAATGATAGTGCTCGAAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTTATGAAGAAGGTGAGTGAACTGACCACCCTCTGTGATATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCAGCCTGAAGTCTGGCCTTCCCCCTTGGGAGTCCATCGCGTGCTTGCACAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAGGAGACTTTCCTAAGGCAAAGAATCAACAAGGCTCAGGAGCAACTCAAGAAGCACAAGAAAGACAATCGGGAGAAGGAGATGGCTCGTGTTATGTTCCAAAGCCTAACCGGAAAGACCCTCCAAGGCTTGACAATGTCAGACCTGACTGACCTTAACTGGGTCATTGACCAGCACATGAAAGAGATACAACTCAGGATGAAGAACATTAAGGAGGGCTCTGTGAAGAGCCAGAACCAGGTGCAAGGATCACAGGGGGTGCCAGCTGCAGTGGATCATAAAAATACAACGATGAAGAGTAACGGTGAGGGAAGCAGCAACAACATGGCGATGAAGAGTGGCGAAGAGGGCAGCAACATGGAACATCGAATCCTAGACAGGCAAGCTTTTGATCACATACAGAACATGGAGGCAATGCAGCTCCATATGTTGCAGATGGCTGCTCAGAAGCAGCACAACTCGTGGTTCGTGGACATGATGAATGCACCACCACCACCACCTCATCCAGATCATCATCAGCAAATGGGGTTCACCGGGGAGGAAATGATGCTTCCCTTTGCGGATCATAACAACAATACCATGTGGCCAAATCCTCCAGCTGACGGCTTTAATTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

292

Amino Acids

33.4

Weight (kDa)

9.25

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	1.5e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	815
AclWI	GGATC	3 cut(s)	511, 537, 825
AcoI	YGGCCR	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	3 cut(s)	415, 493, 857
AgsI	TTSAA	2 cut(s)	64, 214
AjnI	CCWGG	1 cut(s)	492
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	4 cut(s)	521, 641, 676, 854
AluI	AGCT	4 cut(s)	521, 641, 676, 854
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	511, 537, 825
AoxI	GGCC	2 cut(s)	173, 839
ApeKI	GCWGC	6 cut(s)	521, 570, 606, 673, 695, 706
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	5 cut(s)	28, 106, 262, 572, 778
AxyI	CCTNAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	476
BauI	CACGAG	2 cut(s)	342, 715
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	6 cut(s)	508, 582, 618, 682, 685, 718
BccI	CCATC	4 cut(s)	201, 241, 331, 685
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	6, 629
BfmI	CTRYAG	2 cut(s)	142, 522
BisI	GCNGC	6 cut(s)	522, 571, 607, 674, 696, 707
BlsI	GCNGC	6 cut(s)	523, 572, 608, 675, 697, 708
Bme1390I	CCNGG	2 cut(s)	494, 790
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	494, 790
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	2 cut(s)	115, 792
BmuI	ACTGGG	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	183, 379, 789
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 493, 857
Bse1I	ACTGG	1 cut(s)	419
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	183, 379, 789
BseGI	GGATG	2 cut(s)	459, 757
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	3 cut(s)	415, 493, 857
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	305, 463, 713
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	6 cut(s)	508, 582, 618, 682, 685, 718
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	175, 841
BshNI	GGYRCC	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	366, 789
BslI	CCNNNNNNNGG	3 cut(s)	415, 493, 857
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	175, 841
Bsp1286I	GDGCHC	2 cut(s)	49, 476
Bsp143I	GATC	5 cut(s)	503, 529, 646, 763, 817
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	2 cut(s)	175, 841
BspCNI	CTCAG	3 cut(s)	304, 462, 712
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	3 cut(s)	511, 537, 825
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	183, 379, 789
BssMI	GATC	5 cut(s)	503, 529, 646, 763, 817
BssSI	CACGAG	2 cut(s)	342, 715
BssT1I	CCWWGG	2 cut(s)	183, 379
Bst2BI	CACGAG	2 cut(s)	342, 715
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	210, 560
Bst6I	CTCTTC	4 cut(s)	476, 545, 584, 594
BstC8I	GCNNGC	4 cut(s)	200, 204, 519, 639
BstDEI	CTNAG	5 cut(s)	269, 291, 449, 699, 873
BstF5I	GGATG	2 cut(s)	459, 757
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	5 cut(s)	506, 532, 649, 766, 820
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	503, 529, 646, 763, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 603
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	492, 788
BstSFI	CTRYAG	2 cut(s)	142, 522
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	6 cut(s)	508, 582, 618, 682, 685, 718
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	175, 841
BtgZI	GCGATG	2 cut(s)	179, 599
BtsCI	GGATG	2 cut(s)	459, 757
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	200, 204, 519, 639
CsiI	ACCWGGT	1 cut(s)	492
CviAII	CATG	7 cut(s)	220, 433, 580, 613, 661, 730, 835
DdeI	CTNAG	5 cut(s)	269, 291, 449, 699, 873
DpnI	GATC	5 cut(s)	505, 531, 648, 765, 819
DpnII	GATC	5 cut(s)	503, 529, 646, 763, 817
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	4 cut(s)	476, 545, 584, 594
EarI	CTCTTC	4 cut(s)	476, 545, 584, 594
Eco130I	CCWWGG	2 cut(s)	183, 379
Eco24I	GRGCYC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	183, 379
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	2 cut(s)	183, 379
FaeI	CATG	7 cut(s)	223, 436, 583, 616, 664, 733, 838
FatI	CATG	7 cut(s)	219, 432, 579, 612, 660, 729, 834
FauNDI	CATATG	1 cut(s)	681
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	6 cut(s)	522, 571, 607, 674, 696, 707
FokI	GGATG	2 cut(s)	466, 744
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	6 cut(s)	522, 571, 607, 674, 696, 707
FspBI	CTAG	2 cut(s)	6, 629
GluI	GCNGC	6 cut(s)	522, 571, 607, 674, 696, 707
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	2 cut(s)	175, 841
HapII	CCGG	2 cut(s)	366, 789
Hin1II	CATG	7 cut(s)	223, 436, 583, 616, 664, 733, 838
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	5 cut(s)	155, 189, 253, 279, 624
HpaII	CCGG	2 cut(s)	366, 789
HphI	GGTGA	5 cut(s)	28, 106, 262, 572, 778
Hpy166II	GTNNAC	3 cut(s)	101, 727, 786
Hpy188I	TCNGA	2 cut(s)	397, 702
Hpy188III	TCNNGA	8 cut(s)	64, 214, 257, 293, 304, 326, 451, 761
Hpy8I	GTNNAC	3 cut(s)	101, 727, 786
HpyAV	CCTTC	5 cut(s)	7, 70, 85, 186, 325
HpyCH4III	ACNGT	2 cut(s)	210, 560
HpyCH4V	TGCA	6 cut(s)	206, 499, 524, 673, 688, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 603
HpyF3I	CTNAG	5 cut(s)	269, 291, 449, 699, 873
Hsp92II	CATG	7 cut(s)	223, 436, 583, 616, 664, 733, 838
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	503, 529, 646, 763, 817
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	232, 295, 681
Lsp1109I	GCAGC	6 cut(s)	508, 582, 618, 682, 685, 718
LweI	GCATC	2 cut(s)	115, 792
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	2 cut(s)	6, 629
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	5 cut(s)	505, 531, 648, 765, 819
MboI	GATC	5 cut(s)	503, 529, 646, 763, 817
MboII	GAAGA	8 cut(s)	85, 100, 256, 469, 493, 562, 601, 611
MhlI	GDGCHC	2 cut(s)	49, 476
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	1 cut(s)	865
MluNI	TGGCCA	1 cut(s)	841
MlyI	GAGTC	2 cut(s)	149, 198
MnlI	CCTC	9 cut(s)	122, 386, 463, 556, 595, 658, 765, 787, 858
Mox20I	TGGCCA	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	841
MseI	TTAA	3 cut(s)	411, 465, 864
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	841
MspA1I	CMGCKG	2 cut(s)	521, 854
MspI	CCGG	2 cut(s)	366, 789
MspR9I	CCNGG	2 cut(s)	494, 790
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	53, 603
NciI	CCSGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	5 cut(s)	503, 529, 646, 763, 817
NlaIII	CATG	7 cut(s)	223, 436, 583, 616, 664, 733, 838
NlaIV	GGNNCC	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	3 cut(s)	253, 279, 624
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	6 cut(s)	523, 572, 608, 675, 697, 708
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
Psp6I	CCWGG	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	516
PstI	CTGCAG	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	391
PvuII	CAGCTG	2 cut(s)	521, 854
RseI	CAYNNNNRTG	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	411, 465, 864
SatI	GCNGC	6 cut(s)	522, 571, 607, 674, 696, 707
Sau3AI	GATC	5 cut(s)	503, 529, 646, 763, 817
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	2 cut(s)	494, 790
SduI	GDGCHC	2 cut(s)	49, 476
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	115, 792
SfcI	CTRYAG	2 cut(s)	142, 522
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	865
SsiI	CCGC	1 cut(s)	815
SspMI	CTAG	2 cut(s)	6, 629
StyD4I	CCNGG	2 cut(s)	492, 788
StyI	CCWWGG	2 cut(s)	183, 379
TaaI	ACNGT	2 cut(s)	210, 560
TaqI	TCGA	2 cut(s)	49, 622
TasI	AATT	1 cut(s)	865
TfiI	GAWTC	3 cut(s)	253, 279, 624
Tru1I	TTAA	3 cut(s)	411, 465, 864
Tru9I	TTAA	3 cut(s)	411, 465, 864
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	6 cut(s)	521, 570, 606, 673, 695, 706
TspDTI	ATGAA	6 cut(s)	101, 449, 470, 563, 602, 749
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	6, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.