Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

9855671 .. 9856458

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGAAAGTACATGAACTCTCAACTCTATGTGGCATCACATCGTGTGCGATCATCTACAGTCCGTATGATACCAGTCATGAAGTGTGGCCATCAAATTCTGGTGTGCAAAGAGTGGTTTCCGAATTTAGGACACTCCCGGAAATGGATCAACACAAAAAGATGGTAGATCAAGAAGGTTTTCTCAAACAAAGGATCGCGAAACCGACAGAGAATTTGAGGAGACAAAGAAAGGACAATAAGGAGCTCGAGATGACTGAAGTCATGTTTCGATGCTTAATTGGAAACATGGAGATGCTTAAATCAGAATCACAATCAGAATCAACAACAATGGTTTATGAAAATGATGAACCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

119

Amino Acids

13.85

Weight (kDa)

5.64

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	1 - 26	3.9e-06	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AclWI	GGATC	2 cut(s)	156, 203
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	97, 125, 214
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	129, 145
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	156, 203
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	97, 125, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
Asp700I	GAANNNNTTC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	2 cut(s)	100, 157
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	45, 263, 285
BoxI	GACNNNNGTC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 145
Bse1I	ACTGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	129, 145
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	129, 145
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	51, 148, 169, 195
Bsp68I	TCGCGA	1 cut(s)	200
BspANI	GGCC	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	79
BspPI	GGATC	2 cut(s)	156, 203
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	51, 148, 169, 195
Bst4CI	ACNGT	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	4 cut(s)	54, 151, 172, 198
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	4 cut(s)	51, 148, 169, 195
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	91
BtuMI	TCGCGA	1 cut(s)	200
CciI	TCATGA	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	4 cut(s)	14, 80, 265, 289
CviJI	RGCY	2 cut(s)	91, 247
CviKI_1	RGCY	2 cut(s)	91, 247
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	4 cut(s)	53, 150, 171, 197
DpnII	GATC	4 cut(s)	51, 148, 169, 195
DraIII	CACNNNGTG	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	17, 83, 268, 292
FaiI	YATR	7 cut(s)	15, 31, 69, 81, 266, 290, 339
FatI	CATG	4 cut(s)	13, 79, 264, 288
FriOI	GRGCYC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	4 cut(s)	17, 83, 268, 292
HinfI	GANTC	2 cut(s)	308, 320
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	124, 307, 319
Hpy188III	TCNNGA	5 cut(s)	80, 173, 199, 250, 357
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	17, 83, 268, 292
Kzo9I	GATC	4 cut(s)	51, 148, 169, 195
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	87, 88, 153
LweI	GCATC	3 cut(s)	45, 263, 285
MalI	GATC	4 cut(s)	53, 150, 171, 197
MboI	GATC	4 cut(s)	51, 148, 169, 195
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	4 cut(s)	97, 125, 214, 279
MluNI	TGGCCA	1 cut(s)	91
MnlI	CCTC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	2 cut(s)	278, 300
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	200
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	4 cut(s)	51, 148, 169, 195
NlaIII	CATG	4 cut(s)	17, 83, 268, 292
NruI	TCGCGA	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	308, 320
PfoI	TCCNGGA	1 cut(s)	138
PshAI	GACNNNNGTC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	249
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	278, 300
Sau3AI	GATC	4 cut(s)	51, 148, 169, 195
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	2 cut(s)	181, 249
SfaNI	GCATC	3 cut(s)	45, 263, 285
SfcI	CTRYAG	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	97, 125, 214, 279
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	249, 271
TasI	AATT	4 cut(s)	97, 125, 214, 279
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	308, 320
Tru1I	TTAA	2 cut(s)	278, 300
Tru9I	TTAA	2 cut(s)	278, 300
TspDTI	ATGAA	4 cut(s)	17, 30, 96, 354
TspGWI	ACGGA	1 cut(s)	54
XapI	RAATTY	3 cut(s)	97, 125, 214
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.