Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43610430 .. 43611059

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G533600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGAAAGTGAGTGAACTCAACAACCTTTTTGATGTTCCAGCATGTGCCATAATCTATAGCCTATATGATACCCAACATGAAATTTGGCCATCCTCTCTCCAAGTGCAATGCGATCTTAAAAAATTTAAGACCATGCCGGAGATGGAACAAAGCAGAAAGATGGTGAACCAAGAAAGTTTTCTGAGGCAGAGAATTGAGAAAGCCAATGAACAATTGAAGAACCAAAGGAAGGAGATGACGAGGGTGCTATTCCATAGTCTGACTGGTAAGTCCCTCCACAATTTGAACATGGTTTCTTTGAATGATTTGGGTTGGCTGATTGACCAAAGCTTGAAGGAGATTCGCGTCAAAATTAAGATTCTGAATGAGGCGAAGGAGAACAAACAAGTCCAAGTAGAACCAACAGGACTGCTAAGGCAGGCTTTCGAAACTAACAGTATAGAGACAATGCTGAGGCATCCATGGTTCATGGGCATGAAGAACTCACAAGATCAGCATATGGGGGCGGGGGTTGGTGGTGGAGATGAGATGATTATGCCATTTTGGGGTCAAAATCACATTAATGTTATTTGGTCTAATAATGCCTTTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

200

Amino Acids

23.18

Weight (kDa)

8.51

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	84, 125
AfiI	CCNNNNNNNGG	2 cut(s)	232, 548
AgsI	TTSAA	4 cut(s)	220, 289, 304, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	84, 125
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	100, 139, 157
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	469
Bpu10I	CCTNAGC	2 cut(s)	416, 455
Bpu14I	TTCGAA	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 548
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	2 cut(s)	92, 460
BseLI	CCNNNNNNNGG	2 cut(s)	232, 548
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	176, 446
BseNI	ACTGG	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	232, 548
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	115, 493
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	2 cut(s)	177, 447
BspFNI	CGCG	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	115, 493
BssT1I	CCWWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	185, 416, 455
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	92, 460
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	118, 496
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	115, 493
BstNSI	RCATGY	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	92, 460
Cac8I	GCNNGC	1 cut(s)	423
CseI	GACGC	1 cut(s)	337
CviAII	CATG	7 cut(s)	45, 80, 136, 292, 465, 472, 478
CviJI	RGCY	6 cut(s)	63, 91, 206, 319, 333, 425
CviKI_1	RGCY	6 cut(s)	63, 91, 206, 319, 333, 425
DdeI	CTNAG	3 cut(s)	185, 416, 455
DpnI	GATC	2 cut(s)	117, 495
DpnII	GATC	2 cut(s)	115, 493
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	7 cut(s)	48, 83, 139, 295, 468, 475, 481
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	7 cut(s)	44, 79, 135, 291, 464, 471, 477
FauI	CCCGC	1 cut(s)	502
FauNDI	CATATG	1 cut(s)	501
FokI	GGATG	2 cut(s)	79, 447
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	337
Hin1II	CATG	7 cut(s)	48, 83, 139, 295, 468, 475, 481
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	343, 361
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	17, 169
Hpy188I	TCNGA	3 cut(s)	186, 264, 366
Hpy8I	GTNNAC	2 cut(s)	17, 169
HpyAV	CCTTC	3 cut(s)	226, 331, 370
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	1 cut(s)	109
HpyF3I	CTNAG	3 cut(s)	185, 416, 455
Hsp92II	CATG	7 cut(s)	48, 83, 139, 295, 468, 475, 481
Kzo9I	GATC	2 cut(s)	115, 493
LpnPI	CCDG	5 cut(s)	54, 153, 252, 393, 407
LweI	GCATC	1 cut(s)	469
MalI	GATC	2 cut(s)	117, 495
MboI	GATC	2 cut(s)	115, 493
MboII	GAAGA	3 cut(s)	16, 232, 493
MfeI	CAATTG	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	6 cut(s)	84, 125, 195, 215, 283, 354
MluNI	TGGCCA	1 cut(s)	91
MnlI	CCTC	6 cut(s)	106, 180, 237, 287, 364, 450
Mox20I	TGGCCA	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	91
MseI	TTAA	4 cut(s)	120, 129, 357, 564
MslI	CAYNNNNRTG	2 cut(s)	476, 564
Msp20I	TGGCCA	1 cut(s)	91
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	2 cut(s)	115, 493
NlaIII	CATG	7 cut(s)	48, 83, 139, 295, 468, 475, 481
NspI	RCATGY	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	343, 361
PshBI	ATTAAT	1 cut(s)	564
RseI	CAYNNNNRTG	2 cut(s)	476, 564
SaqAI	TTAA	4 cut(s)	120, 129, 357, 564
Sau3AI	GATC	2 cut(s)	115, 493
SetI	ASST	2 cut(s)	30, 335
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	476, 564
Sse9I	AATT	6 cut(s)	84, 125, 195, 215, 283, 354
SsiI	CCGC	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	429
TasI	AATT	6 cut(s)	84, 125, 195, 215, 283, 354
TfiI	GAWTC	2 cut(s)	343, 361
Tru1I	TTAA	4 cut(s)	120, 129, 357, 564
Tru9I	TTAA	4 cut(s)	120, 129, 357, 564
TspDTI	ATGAA	5 cut(s)	17, 96, 225, 460, 494
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	2 cut(s)	84, 125
XceI	RCATGY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 263
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.