Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001634.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43881 .. 44768

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001634.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgactagaaagaaggtgaaacttacctacatcactaatgatagtgctcgaaaagcaacatataagaaaaggaagaagggtctgatgaaaaaggtgagtgaactcaccaccctttgtgacattgatgcttgtgctattatctacagcccttatgactcccagcctgaaatttggccttcccccttgggagtccaacgtgtgcttgcgcagttcaagaccatgcctgaaatggagcaaagcaagaagatggtgaatcaggagactttcctgaggcaacgaatcaacaaggctcaggaacaacttaagaagcaaaagaaagacaaccgggaaaaggagatggctcgtgtgatgttccaaagcctaaccggaaagtccctccggggcttgacactgtcagacctgactgatctcggatgggtcattgaccaacacatgcaggagttacatctcaggatgaagaacattaaggaggaggctgtgaagagccagaaccaagtgcaaggagcacaaggggtgtcggctgctgcaacggaacatagaatggcagtgatgaagagtaatggagagggcagcagcagcaacatggcgatgaagactggtgaagagagcagcaacatgcagcatgcagcccttgacaggcaagtttttgatcacatgcataacatggaggcaatgcagctccaaatgatgcagatggcagctcagaagcagcagaacccttggttcatggacatgatgaatgcgccactaccaacaccactgccacatccagatcatcatcagcatatggggtttaccggggaggatatgatggttcctttcgcggatcataaccacaatactatgtggccaaatcctcctcctgctagcgcctttaattttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

295

Amino Acids

33.79

Weight (kDa)

9.27

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	1 cut(s)	824
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	331, 636
AflII	CTTAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	2 cut(s)	679, 701
AluI	AGCT	2 cut(s)	679, 701
Alw21I	GWGCWC	2 cut(s)	49, 508
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	2 cut(s)	173, 848
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	208, 745, 872
AsuC2I	CCSGG	3 cut(s)	326, 380, 799
AsuHPI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
AsuNHI	GCTAGC	1 cut(s)	866
AxyI	CCTNAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	850
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	49, 508
BccI	CCATC	5 cut(s)	241, 331, 408, 688, 805
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	3 cut(s)	326, 380, 799
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	6, 867
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	302
Bme1390I	CCNGG	3 cut(s)	326, 380, 799
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	326, 380, 799
BmsI	GCATC	2 cut(s)	115, 678
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	3 cut(s)	326, 380, 799
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	4 cut(s)	183, 379, 719, 798
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 636
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	4 cut(s)	183, 379, 719, 798
BseGI	GGATG	3 cut(s)	419, 459, 766
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	331, 636
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	260, 305, 463, 716
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	485, 849
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	175, 850
BsiHKAI	GWGCWC	2 cut(s)	49, 508
BsiSI	CCGG	4 cut(s)	325, 366, 379, 798
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	331, 636
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	175, 850
Bsp1286I	GDGCHC	2 cut(s)	49, 508
Bsp143I	GATC	4 cut(s)	406, 649, 772, 826
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	2 cut(s)	175, 850
BspCNI	CTCAG	4 cut(s)	261, 304, 462, 715
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	816
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	1 cut(s)	476
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	4 cut(s)	183, 379, 719, 798
BssMI	GATC	4 cut(s)	406, 649, 772, 826
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	183, 719
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	476, 548, 597
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	204, 624, 868
BstDEI	CTNAG	4 cut(s)	269, 291, 449, 702
BstF5I	GGATG	3 cut(s)	419, 459, 766
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	3 cut(s)	208, 745, 872
BstKTI	GATC	4 cut(s)	409, 652, 775, 829
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	406, 649, 772, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 576
BstNSI	RCATGY	4 cut(s)	436, 619, 626, 658
BstSCI	CCNGG	3 cut(s)	324, 378, 797
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	824
BstV2I	GAAGAC	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	175, 850
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	419, 459, 766
BtsI	GCAGTG	2 cut(s)	552, 758
BtsIMutI	CAGTG	3 cut(s)	389, 552, 758
Cac8I	GCNNGC	3 cut(s)	204, 624, 868
CfoI	GCGC	3 cut(s)	208, 745, 872
CviAII	CATG	9 cut(s)	220, 433, 583, 616, 623, 655, 664, 727, 733
DdeI	CTNAG	4 cut(s)	269, 291, 449, 702
DpnI	GATC	4 cut(s)	408, 651, 774, 828
DpnII	GATC	4 cut(s)	406, 649, 772, 826
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	3 cut(s)	476, 548, 597
EarI	CTCTTC	3 cut(s)	476, 548, 597
Eco130I	CCWWGG	2 cut(s)	183, 719
Eco81I	CCTNAGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	183, 719
EcoT22I	ATGCAT	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	183, 719
FaeI	CATG	9 cut(s)	223, 436, 586, 619, 626, 658, 667, 730, 736
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	9 cut(s)	219, 432, 582, 615, 622, 654, 663, 726, 732
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	649
FokI	GGATG	3 cut(s)	426, 466, 753
FspBI	CTAG	2 cut(s)	6, 867
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	3 cut(s)	207, 744, 871
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	2 cut(s)	175, 850
HapII	CCGG	4 cut(s)	325, 366, 379, 798
HhaI	GCGC	3 cut(s)	208, 745, 872
Hin1II	CATG	9 cut(s)	223, 436, 586, 619, 626, 658, 667, 730, 736
Hin6I	GCGC	3 cut(s)	206, 743, 870
HinP1I	GCGC	3 cut(s)	206, 743, 870
HinfI	GANTC	4 cut(s)	155, 189, 253, 279
HpaII	CCGG	4 cut(s)	325, 366, 379, 798
HphI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
Hpy166II	GTNNAC	2 cut(s)	101, 795
Hpy188I	TCNGA	4 cut(s)	84, 397, 413, 705
Hpy188III	TCNNGA	6 cut(s)	214, 257, 268, 293, 451, 770
Hpy8I	GTNNAC	2 cut(s)	101, 795
HpyAV	CCTTC	3 cut(s)	7, 70, 186
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	8 cut(s)	436, 499, 527, 619, 626, 658, 676, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 576
HpyF3I	CTNAG	4 cut(s)	269, 291, 449, 702
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	9 cut(s)	223, 436, 586, 619, 626, 658, 667, 730, 736
HspAI	GCGC	3 cut(s)	206, 743, 870
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	406, 649, 772, 826
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	232, 503, 684
LweI	GCATC	2 cut(s)	115, 678
MaeI	CTAG	2 cut(s)	6, 867
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	116, 441
MalI	GATC	4 cut(s)	408, 651, 774, 828
MboI	GATC	4 cut(s)	406, 649, 772, 826
MboII	GAAGA	7 cut(s)	85, 256, 469, 493, 565, 604, 614
MhlI	GDGCHC	2 cut(s)	49, 508
MlsI	TGGCCA	1 cut(s)	850
MluCI	AATT	2 cut(s)	168, 877
MluNI	TGGCCA	1 cut(s)	850
MlyI	GAGTC	2 cut(s)	149, 198
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	264, 386, 463, 466, 559, 661, 796, 867, 870
Mox20I	TGGCCA	1 cut(s)	850
Mph1103I	ATGCAT	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	850
MseI	TTAA	3 cut(s)	303, 465, 876
MslI	CAYNNNNRTG	2 cut(s)	587, 731
Msp20I	TGGCCA	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	4 cut(s)	325, 366, 379, 798
MspR9I	CCNGG	3 cut(s)	326, 380, 799
Mva1269I	GAATGC	1 cut(s)	745
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	2 cut(s)	53, 576
NciI	CCSGG	3 cut(s)	326, 380, 799
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	4 cut(s)	406, 649, 772, 826
NheI	GCTAGC	1 cut(s)	866
NlaIII	CATG	9 cut(s)	223, 436, 586, 619, 626, 658, 667, 730, 736
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	660
NspI	RCATGY	4 cut(s)	436, 619, 626, 658
PaeI	GCATGC	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	253, 279
PflFI	GACNNNGTC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	816
PsyI	GACNNNGTC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	587, 731
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	303, 465, 876
Sau3AI	GATC	4 cut(s)	406, 649, 772, 826
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	3 cut(s)	326, 380, 799
SduI	GDGCHC	2 cut(s)	49, 508
SetI	ASST	7 cut(s)	18, 29, 96, 199, 402, 681, 703
SfaNI	GCATC	2 cut(s)	115, 678
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	587, 731
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	2 cut(s)	168, 877
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	2 cut(s)	6, 867
StyD4I	CCNGG	3 cut(s)	324, 378, 797
StyI	CCWWGG	2 cut(s)	183, 719
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	168, 877
TfiI	GAWTC	2 cut(s)	253, 279
Tru1I	TTAA	3 cut(s)	303, 465, 876
Tru9I	TTAA	3 cut(s)	303, 465, 876
TscAI	CASTG	3 cut(s)	396, 552, 765
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	101, 470, 566, 605, 715, 752
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	3 cut(s)	396, 552, 765
Tth111I	GACNNNGTC	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	4 cut(s)	436, 619, 626, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	6, 867
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.