Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

42128332 .. 42128678

Gene Structure 347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTAGCGATGAAGAGTAATGGAGAGGGCGGCAGCAGCAACATGGCAATGAAGACTGGCAATGCAGCTCCAAATGATGCAGATGGCAGCTCGAAGCAGCGAGAACCCTTGGTTCATGGACATGATGAATGCACCACCAACAACACCACTGCCACATCTAGATCATCATCAGCATATGGGGTTTACCGGGAGGATATGATGCTTCCTTTCGCGGATCATAACCACGGTACCATGTGGCCAAATCCTCCTCTCTCTGGCGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

91

Amino Acids

9.68

Weight (kDa)

5.67

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	212
AciI	CCGC	3 cut(s)	30, 212, 258
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	236
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	68, 90
AluI	AGCT	2 cut(s)	68, 90
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	5 cut(s)	33, 36, 65, 87, 97
Asp718I	GGTACC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	211, 244
BalI	TGGCCA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	5 cut(s)	45, 48, 77, 99, 109
BccI	CCATC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	7 cut(s)	31, 34, 37, 66, 88, 98, 259
BlsI	GCNGC	7 cut(s)	32, 35, 38, 67, 89, 99, 260
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	67, 189
BpiI	GAAGAC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	108, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	54, 67
Bse8I	GATNNNNATC	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	108, 223
BseJI	GATNNNNATC	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	2 cut(s)	54, 67
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	45, 48, 77, 99, 109
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	161, 214
BspACI	CCGC	3 cut(s)	30, 212, 258
BspANI	GGCC	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	54, 67
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	108, 223
BssMI	GATC	2 cut(s)	161, 214
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	164, 217
BstMBI	GATC	2 cut(s)	161, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	5 cut(s)	45, 48, 77, 99, 109
BstV2I	GAAGAC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	4 cut(s)	43, 116, 122, 232
CviJI	RGCY	4 cut(s)	68, 90, 238, 261
CviKI_1	RGCY	4 cut(s)	68, 90, 238, 261
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	163, 216
DpnII	GATC	2 cut(s)	161, 214
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	4 cut(s)	46, 119, 125, 235
FaiI	YATR	8 cut(s)	44, 117, 123, 175, 177, 197, 219, 233
FatI	CATG	4 cut(s)	42, 115, 121, 231
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	7 cut(s)	31, 34, 37, 66, 88, 98, 259
Fsp4HI	GCNGC	7 cut(s)	31, 34, 37, 66, 88, 98, 259
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	7 cut(s)	31, 34, 37, 66, 88, 98, 259
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	4 cut(s)	46, 119, 125, 235
HpaII	CCGG	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	65, 80, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	46, 119, 125, 235
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	161, 214
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	3 cut(s)	42, 200, 240
Lsp1109I	GCAGC	5 cut(s)	45, 48, 77, 99, 109
LweI	GCATC	2 cut(s)	67, 189
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	163, 216
MboI	GATC	2 cut(s)	161, 214
MboII	GAAGA	2 cut(s)	25, 64
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	1 cut(s)	265
MluNI	TGGCCA	1 cut(s)	238
MnlI	CCTC	4 cut(s)	19, 184, 255, 258
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	47, 120
Msp20I	TGGCCA	1 cut(s)	238
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	161, 214
NlaIII	CATG	4 cut(s)	46, 119, 125, 235
NlaIV	GGNNCC	1 cut(s)	229
PctI	GAATGC	1 cut(s)	134
PkrI	GCNGC	7 cut(s)	32, 35, 38, 67, 89, 99, 260
PspN4I	GGNNCC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	2 cut(s)	47, 120
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	7 cut(s)	31, 34, 37, 66, 88, 98, 259
Sau3AI	GATC	2 cut(s)	161, 214
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	2 cut(s)	70, 92
SfaNI	GCATC	2 cut(s)	67, 189
SmiMI	CAYNNNNRTG	2 cut(s)	47, 120
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	3 cut(s)	30, 212, 258
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	265
TauI	GCSGC	2 cut(s)	33, 261
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	5 cut(s)	33, 36, 65, 87, 97
TspDTI	ATGAA	4 cut(s)	26, 65, 104, 141
TspRI	CASTG	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	158
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.