Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

1694457 .. 1694954

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1013500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTCGAAAGAAGGTGAAGCTTGCCTACATCCAAAACGACACGACTCGAAAACTAACATTCAAAAAAAGAAAGAAGGGTTTCATGAAGAAGATGAGTGAAATCACTGCCCTTTGTGATGTTGAGGCATGTGCTGTTGTTTACGGACAGAACGATACTCAGCCCGAGGTTTGGCCATCCCCTTCGGGAGTACAAGGCACTTACGCGAAGTTCAGGGCCATGCCGTCAATGGAGCAGACCAAAAATCAACTGAACATGGTGACTTTTCTGAGGCAGCGGATCGAGAAGGCAAAGGAACAGCTGAGGAAACAGAAGAAGGAGAACCGGGAGAAAGAAATGTCAATCCTGATGAACCAGTGTCTGACTGGGAGGTCCCTTCAAGATCTGAACATGGGGGATCTGAAAGACCTAGGGTGGGTGGTTGACCACAAAGTGGAAGAGATCAATAAAAAGGTGAAGAAAGTGAATGACGAGCTGGCTAGGAACGGGAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

9.79

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	2.9e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccII	CGCG	1 cut(s)	206
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	287, 405
AcoI	YGGCCR	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	171, 415, 433
AgsI	TTSAA	2 cut(s)	64, 380
AluBI	AGCT	3 cut(s)	22, 301, 475
AluI	AGCT	3 cut(s)	22, 301, 475
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	287, 405
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	173, 216
ApeKI	GCWGC	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	216, 372
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	28, 271, 466
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	372
AvrII	CCTAGG	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	410, 480
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	275
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	216, 372
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	165, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 415, 433
Bse1I	ACTGG	2 cut(s)	355, 370
BseDI	CCNNGG	2 cut(s)	165, 409
BseGI	GGATG	2 cut(s)	30, 176
BseLI	CCNNNNNNNGG	3 cut(s)	171, 415, 433
BseMII	CTCAG	3 cut(s)	173, 260, 293
BseNI	ACTGG	2 cut(s)	355, 370
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	175, 218
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	171, 415, 433
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	175, 218
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	279, 382, 397, 441
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	175, 218
BspCNI	CTCAG	3 cut(s)	172, 261, 294
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	287, 405
BsrI	ACTGG	2 cut(s)	355, 370
BssECI	CCNNGG	2 cut(s)	165, 409
BssMI	GATC	4 cut(s)	279, 382, 397, 441
BssT1I	CCWWGG	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	24, 477
BstDEI	CTNAG	3 cut(s)	159, 269, 302
BstF5I	GGATG	2 cut(s)	30, 176
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	4 cut(s)	282, 385, 400, 444
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	279, 382, 397, 441
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	382, 397
BstYI	RGATCY	2 cut(s)	382, 397
BsuRI	GGCC	2 cut(s)	175, 218
BtsCI	GGATG	2 cut(s)	30, 176
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 362
Cac8I	GCNNGC	2 cut(s)	24, 477
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	216, 372
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	5 cut(s)	85, 129, 220, 256, 391
CviJI	RGCY	7 cut(s)	22, 163, 175, 218, 301, 475, 479
CviKI_1	RGCY	7 cut(s)	22, 163, 175, 218, 301, 475, 479
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	159, 269, 302
DpnI	GATC	4 cut(s)	281, 384, 399, 443
DpnII	GATC	4 cut(s)	279, 382, 397, 441
DraIII	CACNNNGTG	1 cut(s)	433
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	5 cut(s)	88, 132, 223, 259, 394
FaiI	YATR	5 cut(s)	86, 130, 221, 257, 392
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	5 cut(s)	84, 128, 219, 255, 390
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	17, 163
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	2 cut(s)	410, 480
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	175, 218
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	5 cut(s)	88, 132, 223, 259, 394
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	3 cut(s)	28, 271, 466
Hpy166II	GTNNAC	2 cut(s)	142, 424
Hpy188I	TCNGA	4 cut(s)	270, 363, 387, 402
Hpy188III	TCNNGA	6 cut(s)	6, 85, 186, 283, 346, 380
Hpy8I	GTNNAC	2 cut(s)	142, 424
HpyAV	CCTTC	6 cut(s)	7, 70, 192, 280, 310, 386
HpyF3I	CTNAG	3 cut(s)	159, 269, 302
Hsp92II	CATG	5 cut(s)	88, 132, 223, 259, 394
Kzo9I	GATC	4 cut(s)	279, 382, 397, 441
LmnI	GCTCC	2 cut(s)	232, 489
LpnPI	CCDG	6 cut(s)	199, 338, 351, 359, 368, 461
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	410, 480
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	281, 384, 399, 443
MboI	GATC	4 cut(s)	279, 382, 397, 441
MboII	GAAGA	5 cut(s)	100, 103, 325, 449, 469
MflI	RGATCY	2 cut(s)	382, 397
MlsI	TGGCCA	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	118, 160, 264, 297, 363
Mox20I	TGGCCA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	1 cut(s)	496
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	277, 301
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	206
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	279, 382, 397, 441
NlaIII	CATG	5 cut(s)	88, 132, 223, 259, 394
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	132
PagI	TCATGA	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	216, 372
PspPPI	RGGWCCY	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	382, 397
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	496
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	4 cut(s)	279, 382, 397, 441
Sau96I	GGNCC	2 cut(s)	216, 372
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	8 cut(s)	18, 24, 171, 303, 374, 411, 456, 477
SinI	GGWCC	1 cut(s)	372
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	410, 480
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	409
TaqI	TCGA	3 cut(s)	7, 49, 282
TatI	WGTACW	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TscAI	CASTG	2 cut(s)	112, 362
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	73, 101, 365
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	112, 362
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	372
XceI	RCATGY	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XmaJI	CCTAGG	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	410, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.