Agamous-like MADS-box protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1321 |
| AccBSI | CCGCTC | 1 cut(s) | 1868 |
| AccI | GTMKAC | 1 cut(s) | 1474 |
| AciI | CCGC | 2 cut(s) | 858, 1866 |
| AclWI | GGATC | 3 cut(s) | 407, 592, 1160 |
| AcoI | YGGCCR | 2 cut(s) | 14, 495 |
| AcsI | RAATTY | 7 cut(s) | 689, 940, 1081, 1135, 1250, 1956, 2290 |
| AcuI | CTGAAG | 2 cut(s) | 615, 1479 |
| AcyI | GRCGYC | 1 cut(s) | 519 |
| AfaI | GTAC | 5 cut(s) | 347, 609, 991, 2083, 2126 |
| AfeI | AGCGCT | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 235, 395, 1048, 2034, 2075, 2117, 2237 |
| AgsI | TTSAA | 9 cut(s) | 76, 110, 220, 506, 1399, 1499, 1598, 1823, 2064 |
| AhlI | ACTAGT | 1 cut(s) | 710 |
| AjnI | CCWGG | 2 cut(s) | 124, 1324 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 997, 1029, 1409, 1441 |
| AleI | CACNNNNGTG | 1 cut(s) | 1744 |
| Alw21I | GWGCWC | 2 cut(s) | 973, 2334 |
| Alw26I | GTCTC | 4 cut(s) | 397, 608, 1252, 1702 |
| AlwI | GGATC | 3 cut(s) | 407, 592, 1160 |
| Aor51HI | AGCGCT | 1 cut(s) | 462 |
| AoxI | GGCC | 5 cut(s) | 14, 237, 495, 1057, 2228 |
| ApeKI | GCWGC | 3 cut(s) | 2038, 2274, 2285 |
| ApoI | RAATTY | 7 cut(s) | 689, 940, 1081, 1135, 1250, 1956, 2290 |
| AseI | ATTAAT | 1 cut(s) | 2133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1464 |
| AspA2I | CCTAGG | 1 cut(s) | 1060 |
| AspLEI | GCGC | 1 cut(s) | 463 |
| AspS9I | GGNCC | 2 cut(s) | 238, 952 |
| AsuC2I | CCSGG | 1 cut(s) | 2252 |
| AsuHPI | GGTGA | 6 cut(s) | 289, 331, 414, 422, 1135, 1943 |
| AsuII | TTCGAA | 1 cut(s) | 53 |
| AsuNHI | GCTAGC | 1 cut(s) | 829 |
| AvaII | GGWCC | 1 cut(s) | 952 |
| AvrII | CCTAGG | 1 cut(s) | 1060 |
| BanI | GGYRCC | 1 cut(s) | 1321 |
| BanII | GRGCYC | 1 cut(s) | 2334 |
| BbsI | GAAGAC | 2 cut(s) | 136, 2097 |
| Bbv12I | GWGCWC | 2 cut(s) | 973, 2334 |
| BbvCI | CCTCAGC | 1 cut(s) | 2262 |
| BbvI | GCAGC | 3 cut(s) | 2025, 2261, 2297 |
| BccI | CCATC | 4 cut(s) | 188, 274, 2115, 2135 |
| BceAI | ACGGC | 1 cut(s) | 29 |
| BciT130I | CCWGG | 2 cut(s) | 126, 1326 |
| BclI | TGATCA | 2 cut(s) | 135, 532 |
| BcnI | CCSGG | 1 cut(s) | 2252 |
| BcoDI | GTCTC | 4 cut(s) | 397, 608, 1252, 1702 |
| BcuI | ACTAGT | 1 cut(s) | 710 |
| BfaI | CTAG | 9 cut(s) | 303, 374, 390, 711, 830, 1061, 1334, 1488, 2034 |
| BfmI | CTRYAG | 1 cut(s) | 2275 |
| BfoI | RGCGCY | 1 cut(s) | 464 |
| BisI | GCNGC | 4 cut(s) | 1866, 2039, 2275, 2286 |
| BlnI | CCTAGG | 1 cut(s) | 1060 |
| BlsI | GCNGC | 4 cut(s) | 1867, 2040, 2276, 2287 |
| BmcAI | AGTACT | 1 cut(s) | 991 |
| Bme1390I | CCNGG | 3 cut(s) | 126, 1326, 2252 |
| Bme18I | GGWCC | 1 cut(s) | 952 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 952 |
| BmiI | GGNNCC | 3 cut(s) | 240, 1323, 2146 |
| BmrFI | CCNGG | 3 cut(s) | 126, 1326, 2252 |
| BmsI | GCATC | 3 cut(s) | 312, 1897, 2326 |
| BmtI | GCTAGC | 1 cut(s) | 833 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1714 |
| BpiI | GAAGAC | 2 cut(s) | 136, 2097 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1462, 1494 |
| BpmI | CTGGAG | 2 cut(s) | 1347, 1567 |
| Bpu10I | CCTNAGC | 2 cut(s) | 230, 2262 |
| Bpu14I | TTCGAA | 1 cut(s) | 53 |
| BpuEI | CTTGAG | 4 cut(s) | 632, 879, 977, 1724 |
| BpuMI | CCSGG | 1 cut(s) | 2252 |
| BsaBI | GATNNNNATC | 1 cut(s) | 591 |
| BsaHI | GRCGYC | 1 cut(s) | 519 |
| BsaJI | CCNNGG | 2 cut(s) | 1060, 1659 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 473, 503, 1763, 1793, 2070, 2100, 2294, 2324 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 235, 395, 1048, 2034, 2075, 2117, 2237 |
| Bse118I | RCCGGY | 1 cut(s) | 497 |
| Bse1I | ACTGG | 1 cut(s) | 1346 |
| Bse3DI | GCAATG | 4 cut(s) | 37, 60, 1101, 2231 |
| Bse8I | GATNNNNATC | 1 cut(s) | 591 |
| BseBI | CCWGG | 2 cut(s) | 126, 1326 |
| BseDI | CCNNGG | 2 cut(s) | 1060, 1659 |
| BseGI | GGATG | 3 cut(s) | 1644, 2097, 2126 |
| BseJI | GATNNNNATC | 1 cut(s) | 591 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 235, 395, 1048, 2034, 2075, 2117, 2237 |
| BseMI | GCAATG | 4 cut(s) | 37, 60, 1101, 2231 |
| BseMII | CTCAG | 5 cut(s) | 950, 1188, 1460, 1856, 2253 |
| BseNI | ACTGG | 1 cut(s) | 1346 |
| BseRI | GAGGAG | 3 cut(s) | 1064, 2100, 2187 |
| BseXI | GCAGC | 3 cut(s) | 2025, 2261, 2297 |
| BseYI | CCCAGC | 3 cut(s) | 523, 2216, 2269 |
| BsgI | GTGCAG | 1 cut(s) | 465 |
| BshFI | GGCC | 5 cut(s) | 16, 239, 497, 1059, 2230 |
| BshNI | GGYRCC | 1 cut(s) | 1321 |
| BsiHKAI | GWGCWC | 2 cut(s) | 973, 2334 |
| BsiSI | CCGG | 2 cut(s) | 498, 2252 |
| BslFI | GGGAC | 1 cut(s) | 2080 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 235, 395, 1048, 2034, 2075, 2117, 2237 |
| BsmAI | GTCTC | 4 cut(s) | 397, 608, 1252, 1702 |
| BsmBI | CGTCTC | 1 cut(s) | 608 |
| BsmFI | GGGAC | 1 cut(s) | 2080 |
| BsnI | GGCC | 5 cut(s) | 16, 239, 497, 1059, 2230 |
| Bsp119I | TTCGAA | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 2 cut(s) | 973, 2334 |
| Bsp143I | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| BspACI | CCGC | 2 cut(s) | 858, 1866 |
| BspANI | GGCC | 5 cut(s) | 16, 239, 497, 1059, 2230 |
| BspCNI | CTCAG | 5 cut(s) | 949, 1189, 1461, 1855, 2254 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 3 cut(s) | 240, 1323, 2146 |
| BspMAI | CTGCAG | 1 cut(s) | 2279 |
| BspOI | GCTAGC | 1 cut(s) | 833 |
| BspPI | GGATC | 3 cut(s) | 407, 592, 1160 |
| BspQI | GCTCTTC | 1 cut(s) | 1765 |
| BspT104I | TTCGAA | 1 cut(s) | 53 |
| BspT107I | GGYRCC | 1 cut(s) | 1321 |
| BsrBI | CCGCTC | 1 cut(s) | 1868 |
| BsrDI | GCAATG | 4 cut(s) | 37, 60, 1101, 2231 |
| BsrFI | RCCGGY | 1 cut(s) | 497 |
| BsrI | ACTGG | 1 cut(s) | 1346 |
| BssAI | RCCGGY | 1 cut(s) | 497 |
| BssECI | CCNNGG | 2 cut(s) | 1060, 1659 |
| BssMI | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| BssNAI | GTATAC | 1 cut(s) | 1475 |
| BssNI | GRCGYC | 1 cut(s) | 519 |
| BssT1I | CCWWGG | 2 cut(s) | 1060, 1659 |
| Bst1107I | GTATAC | 1 cut(s) | 1475 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 1326 |
| Bst4CI | ACNGT | 5 cut(s) | 345, 426, 1543, 1559, 2086 |
| Bst6I | CTCTTC | 1 cut(s) | 1765 |
| BstACI | GRCGYC | 1 cut(s) | 519 |
| BstBI | TTCGAA | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 5 cut(s) | 495, 499, 831, 2043, 2259 |
| BstDEI | CTNAG | 8 cut(s) | 230, 936, 1197, 1469, 1481, 1842, 2262, 2340 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 3 cut(s) | 1644, 2097, 2126 |
| BstH2I | RGCGCY | 1 cut(s) | 464 |
| BstHHI | GCGC | 1 cut(s) | 463 |
| BstKTI | GATC | 5 cut(s) | 138, 415, 535, 600, 1155 |
| BstMAI | GTCTC | 4 cut(s) | 397, 608, 1252, 1702 |
| BstMBI | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 475, 1100, 1109, 2294 |
| BstNI | CCWGG | 2 cut(s) | 126, 1326 |
| BstNSI | RCATGY | 2 cut(s) | 2045, 2261 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1714 |
| BstSCI | CCNGG | 3 cut(s) | 124, 1324, 2250 |
| BstSFI | CTRYAG | 1 cut(s) | 2275 |
| BstV1I | GCAGC | 3 cut(s) | 2025, 2261, 2297 |
| BstV2I | GAAGAC | 2 cut(s) | 136, 2097 |
| BstX2I | RGATCY | 2 cut(s) | 597, 1152 |
| BstYI | RGATCY | 2 cut(s) | 597, 1152 |
| BstZ17I | GTATAC | 1 cut(s) | 1475 |
| BsuRI | GGCC | 5 cut(s) | 16, 239, 497, 1059, 2230 |
| BtsCI | GGATG | 3 cut(s) | 1644, 2097, 2126 |
| BtsI | GCAGTG | 1 cut(s) | 332 |
| BtsIMutI | CAGTG | 3 cut(s) | 138, 332, 1611 |
| Cac8I | GCNNGC | 5 cut(s) | 495, 499, 831, 2043, 2259 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 1 cut(s) | 463 |
| Cfr10I | RCCGGY | 1 cut(s) | 497 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 952 |
| CseI | GACGC | 2 cut(s) | 527, 1704 |
| Csp6I | GTAC | 5 cut(s) | 346, 608, 990, 2082, 2125 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1707, 1742 |
| CviAII | CATG | 9 cut(s) | 316, 559, 743, 916, 1113, 1862, 2029, 2042, 2258 |
| CviQI | GTAC | 5 cut(s) | 346, 608, 990, 2082, 2125 |
| DdeI | CTNAG | 8 cut(s) | 230, 936, 1197, 1469, 1481, 1842, 2262, 2340 |
| DpnI | GATC | 5 cut(s) | 137, 414, 534, 599, 1154 |
| DpnII | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| EaeI | YGGCCR | 2 cut(s) | 14, 495 |
| Eam1104I | CTCTTC | 1 cut(s) | 1765 |
| EarI | CTCTTC | 1 cut(s) | 1765 |
| Ecl136II | GAGCTC | 1 cut(s) | 2332 |
| Eco130I | CCWWGG | 2 cut(s) | 1060, 1659 |
| Eco24I | GRGCYC | 1 cut(s) | 2334 |
| Eco32I | GATATC | 1 cut(s) | 99 |
| Eco47I | GGWCC | 1 cut(s) | 952 |
| Eco47III | AGCGCT | 1 cut(s) | 462 |
| Eco53kI | GAGCTC | 1 cut(s) | 2332 |
| Eco57I | CTGAAG | 2 cut(s) | 615, 1479 |
| EcoICRI | GAGCTC | 1 cut(s) | 2332 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 233 |
| EcoO109I | RGGNCCY | 2 cut(s) | 238, 952 |
| EcoRI | GAATTC | 1 cut(s) | 1135 |
| EcoRII | CCWGG | 2 cut(s) | 124, 1324 |
| EcoRV | GATATC | 1 cut(s) | 99 |
| EcoT14I | CCWWGG | 2 cut(s) | 1060, 1659 |
| EcoT38I | GRGCYC | 1 cut(s) | 2334 |
| ErhI | CCWWGG | 2 cut(s) | 1060, 1659 |
| Esp3I | CGTCTC | 1 cut(s) | 608 |
| FaeI | CATG | 9 cut(s) | 319, 562, 746, 919, 1116, 1865, 2032, 2045, 2261 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 594, 626, 2004, 2036 |
| FaqI | GGGAC | 1 cut(s) | 2080 |
| FatI | CATG | 9 cut(s) | 315, 558, 742, 915, 1112, 1861, 2028, 2041, 2257 |
| FbaI | TGATCA | 2 cut(s) | 135, 532 |
| FblI | GTMKAC | 1 cut(s) | 1474 |
| Fnu4HI | GCNGC | 4 cut(s) | 1866, 2039, 2275, 2286 |
| FokI | GGATG | 3 cut(s) | 1631, 2104, 2133 |
| FriOI | GRGCYC | 1 cut(s) | 2334 |
| Fsp4HI | GCNGC | 4 cut(s) | 1866, 2039, 2275, 2286 |
| FspBI | CTAG | 9 cut(s) | 303, 374, 390, 711, 830, 1061, 1334, 1488, 2034 |
| GlaI | GCGC | 1 cut(s) | 462 |
| GluI | GCNGC | 4 cut(s) | 1866, 2039, 2275, 2286 |
| GsaI | CCCAGC | 3 cut(s) | 527, 2220, 2273 |
| GsuI | CTGGAG | 2 cut(s) | 1347, 1567 |
| HaeII | RGCGCY | 1 cut(s) | 464 |
| HaeIII | GGCC | 5 cut(s) | 16, 239, 497, 1059, 2230 |
| HapII | CCGG | 2 cut(s) | 498, 2252 |
| HgaI | GACGC | 2 cut(s) | 527, 1704 |
| HhaI | GCGC | 1 cut(s) | 463 |
| Hin1I | GRCGYC | 1 cut(s) | 519 |
| Hin1II | CATG | 9 cut(s) | 319, 562, 746, 919, 1116, 1865, 2032, 2045, 2261 |
| Hin6I | GCGC | 1 cut(s) | 461 |
| HinP1I | GCGC | 1 cut(s) | 461 |
| HincII | GTYRAC | 3 cut(s) | 646, 1194, 1615 |
| HindII | GTYRAC | 3 cut(s) | 646, 1194, 1615 |
| HindIII | AAGCTT | 3 cut(s) | 77, 221, 897 |
| HinfI | GANTC | 5 cut(s) | 737, 1009, 1329, 1491, 1772 |
| HpaI | GTTAAC | 3 cut(s) | 646, 1194, 1615 |
| HpaII | CCGG | 2 cut(s) | 498, 2252 |
| HphI | GGTGA | 6 cut(s) | 289, 331, 414, 422, 1135, 1943 |
| Hpy166II | GTNNAC | 6 cut(s) | 646, 1194, 1475, 1539, 1615, 1776 |
| Hpy188I | TCNGA | 9 cut(s) | 7, 597, 688, 939, 1134, 1152, 1312, 1470, 1980 |
| Hpy188III | TCNNGA | 9 cut(s) | 743, 995, 1175, 1488, 1562, 1584, 1703, 1764, 1793 |
| Hpy8I | GTNNAC | 6 cut(s) | 646, 1194, 1475, 1539, 1615, 1776 |
| HpyAV | CCTTC | 6 cut(s) | 49, 771, 1021, 1630, 1707, 1957 |
| HpyCH4III | ACNGT | 5 cut(s) | 345, 426, 1543, 1559, 2086 |
| HpyCH4IV | ACGT | 2 cut(s) | 617, 1778 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 475, 1100, 1109, 2294 |
| HpyF3I | CTNAG | 8 cut(s) | 230, 936, 1197, 1469, 1481, 1842, 2262, 2340 |
| HpySE526I | ACGT | 2 cut(s) | 617, 1778 |
| Hsp92I | GRCGYC | 1 cut(s) | 519 |
| Hsp92II | CATG | 9 cut(s) | 319, 562, 746, 919, 1116, 1865, 2032, 2045, 2261 |
| HspAI | GCGC | 1 cut(s) | 461 |
| KroI | GCCGGC | 1 cut(s) | 497 |
| KroNI | GCCGGC | 1 cut(s) | 499 |
| Ksp22I | TGATCA | 2 cut(s) | 135, 532 |
| KspAI | GTTAAC | 3 cut(s) | 646, 1194, 1615 |
| Kzo9I | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| LguI | GCTCTTC | 1 cut(s) | 1765 |
| LmnI | GCTCC | 3 cut(s) | 2254, 2302, 2329 |
| Lsp1109I | GCAGC | 3 cut(s) | 2025, 2261, 2297 |
| LweI | GCATC | 3 cut(s) | 312, 1897, 2326 |
| MaeI | CTAG | 9 cut(s) | 303, 374, 390, 711, 830, 1061, 1334, 1488, 2034 |
| MaeII | ACGT | 2 cut(s) | 617, 1778 |
| MaeIII | GTNAC | 5 cut(s) | 382, 1037, 1779, 1850, 1999 |
| MalI | GATC | 5 cut(s) | 137, 414, 534, 599, 1154 |
| MbiI | CCGCTC | 1 cut(s) | 1868 |
| MboI | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| MboII | GAAGA | 9 cut(s) | 77, 141, 713, 793, 835, 1636, 1639, 1752, 2097 |
| MfeI | CAATTG | 1 cut(s) | 18 |
| MflI | RGATCY | 2 cut(s) | 597, 1152 |
| MhlI | GDGCHC | 2 cut(s) | 973, 2334 |
| MlyI | GAGTC | 3 cut(s) | 1338, 1500, 1781 |
| MmeI | TCCRAC | 7 cut(s) | 287, 754, 952, 1290, 1350, 1713, 1958 |
| MroNI | GCCGGC | 1 cut(s) | 497 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1464 |
| MseI | TTAA | 9 cut(s) | 312, 645, 854, 1086, 1193, 1545, 1614, 1920, 2133 |
| MslI | CAYNNNNRTG | 3 cut(s) | 320, 884, 1744 |
| MspA1I | CMGCKG | 1 cut(s) | 527 |
| MspI | CCGG | 2 cut(s) | 498, 2252 |
| MspR9I | CCNGG | 3 cut(s) | 126, 1326, 2252 |
| MunI | CAATTG | 1 cut(s) | 18 |
| MvaI | CCWGG | 2 cut(s) | 126, 1326 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 475, 1100, 1109, 2294 |
| NaeI | GCCGGC | 1 cut(s) | 499 |
| NciI | CCSGG | 1 cut(s) | 2252 |
| NdeII | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| NgoMIV | GCCGGC | 1 cut(s) | 497 |
| NheI | GCTAGC | 1 cut(s) | 829 |
| NlaIII | CATG | 9 cut(s) | 319, 562, 746, 919, 1116, 1865, 2032, 2045, 2261 |
| NlaIV | GGNNCC | 3 cut(s) | 240, 1323, 2146 |
| NmuCI | GTSAC | 2 cut(s) | 382, 1999 |
| NspI | RCATGY | 2 cut(s) | 2045, 2261 |
| NspV | TTCGAA | 1 cut(s) | 53 |
| OliI | CACNNNNGTG | 1 cut(s) | 1744 |
| PaeI | GCATGC | 2 cut(s) | 2045, 2261 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PciSI | GCTCTTC | 1 cut(s) | 1765 |
| PdiI | GCCGGC | 1 cut(s) | 499 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1464 |
| PfeI | GAWTC | 2 cut(s) | 737, 1009 |
| PfoI | TCCNGGA | 1 cut(s) | 124 |
| PkrI | GCNGC | 4 cut(s) | 1867, 2040, 2276, 2287 |
| PleI | GAGTC | 3 cut(s) | 1337, 1499, 1780 |
| PpsI | GAGTC | 3 cut(s) | 1337, 1499, 1780 |
| PpuMI | RGGWCCY | 1 cut(s) | 952 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1714 |
| PshBI | ATTAAT | 1 cut(s) | 2133 |
| Psp124BI | GAGCTC | 1 cut(s) | 2334 |
| Psp5II | RGGWCCY | 1 cut(s) | 952 |
| Psp6I | CCWGG | 2 cut(s) | 124, 1324 |
| PspFI | CCCAGC | 3 cut(s) | 523, 2216, 2269 |
| PspGI | CCWGG | 2 cut(s) | 124, 1324 |
| PspN4I | GGNNCC | 3 cut(s) | 240, 1323, 2146 |
| PspPI | GGNCC | 2 cut(s) | 238, 952 |
| PspPPI | RGGWCCY | 1 cut(s) | 952 |
| PstI | CTGCAG | 1 cut(s) | 2279 |
| PsuI | RGATCY | 2 cut(s) | 597, 1152 |
| PvuII | CAGCTG | 1 cut(s) | 527 |
| RsaI | GTAC | 5 cut(s) | 347, 609, 991, 2083, 2126 |
| RsaNI | GTAC | 5 cut(s) | 346, 608, 990, 2082, 2125 |
| RseI | CAYNNNNRTG | 3 cut(s) | 320, 884, 1744 |
| SacI | GAGCTC | 1 cut(s) | 2334 |
| SapI | GCTCTTC | 1 cut(s) | 1765 |
| SaqAI | TTAA | 9 cut(s) | 312, 645, 854, 1086, 1193, 1545, 1614, 1920, 2133 |
| SatI | GCNGC | 4 cut(s) | 1866, 2039, 2275, 2286 |
| Sau3AI | GATC | 5 cut(s) | 135, 412, 532, 597, 1152 |
| Sau96I | GGNCC | 2 cut(s) | 238, 952 |
| ScaI | AGTACT | 1 cut(s) | 991 |
| SchI | GAGTC | 3 cut(s) | 1338, 1500, 1781 |
| ScrFI | CCNGG | 3 cut(s) | 126, 1326, 2252 |
| SduI | GDGCHC | 2 cut(s) | 973, 2334 |
| SfaNI | GCATC | 3 cut(s) | 312, 1897, 2326 |
| SfcI | CTRYAG | 1 cut(s) | 2275 |
| SfuI | TTCGAA | 1 cut(s) | 53 |
| SinI | GGWCC | 1 cut(s) | 952 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 320, 884, 1744 |
| SmlI | CTYRAG | 4 cut(s) | 611, 894, 956, 1703 |
| SmoI | CTYRAG | 4 cut(s) | 611, 894, 956, 1703 |
| SpeI | ACTAGT | 1 cut(s) | 710 |
| SphI | GCATGC | 2 cut(s) | 2045, 2261 |
| SsiI | CCGC | 2 cut(s) | 858, 1866 |
| SspI | AATATT | 3 cut(s) | 752, 1169, 1690 |
| SspMI | CTAG | 9 cut(s) | 303, 374, 390, 711, 830, 1061, 1334, 1488, 2034 |
| SstI | GAGCTC | 1 cut(s) | 2334 |
| StyD4I | CCNGG | 3 cut(s) | 124, 1324, 2250 |
| StyI | CCWWGG | 2 cut(s) | 1060, 1659 |
| TaaI | ACNGT | 5 cut(s) | 345, 426, 1543, 1559, 2086 |
| TaiI | ACGT | 2 cut(s) | 620, 1781 |
| TaqI | TCGA | 2 cut(s) | 53, 2334 |
| TatI | WGTACW | 2 cut(s) | 607, 989 |
| TauI | GCSGC | 1 cut(s) | 1868 |
| TfiI | GAWTC | 2 cut(s) | 737, 1009 |
| Tru1I | TTAA | 9 cut(s) | 312, 645, 854, 1086, 1193, 1545, 1614, 1920, 2133 |
| Tru9I | TTAA | 9 cut(s) | 312, 645, 854, 1086, 1193, 1545, 1614, 1920, 2133 |
| TscAI | CASTG | 3 cut(s) | 145, 332, 1611 |
| TseFI | GTSAC | 2 cut(s) | 382, 1999 |
| TseI | GCWGC | 3 cut(s) | 2038, 2274, 2285 |
| Tsp45I | GTSAC | 2 cut(s) | 382, 1999 |
| TspDTI | ATGAA | 7 cut(s) | 177, 567, 1001, 1434, 1655, 1985, 2045 |
| TspGWI | ACGGA | 2 cut(s) | 93, 260 |
| TspRI | CASTG | 3 cut(s) | 145, 332, 1611 |
| VpaK11BI | GGWCC | 1 cut(s) | 952 |
| VspI | ATTAAT | 1 cut(s) | 2133 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 233 |
| XapI | RAATTY | 7 cut(s) | 689, 940, 1081, 1135, 1250, 1956, 2290 |
| XbaI | TCTAGA | 1 cut(s) | 1487 |
| XceI | RCATGY | 2 cut(s) | 2045, 2261 |
| XmaJI | CCTAGG | 1 cut(s) | 1060 |
| XmiI | GTMKAC | 1 cut(s) | 1474 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1464 |
| XspI | CTAG | 9 cut(s) | 303, 374, 390, 711, 830, 1061, 1334, 1488, 2034 |
| ZrmI | AGTACT | 1 cut(s) | 991 |