Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43858762 .. 43859376

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTAGAAGGAAGGTGAGACTGCACTACATTGCCAATGAGACTTCCGAAAGAATGACATTTAGAAAAAGAAAGAAAGGCCTTCTGAAGAAGGTGGGTGAGATAACCACTATCTGTGACATCAAGGTCCCGACGATCATATACAGCCCCTTTGATGCCGAGCTGGAGGTCTTCCCAAGTCATCCGGAAGTCCATGAAATGGTAACGAAGTTCCGAGATATGCCGCAAATGGACAAGACAAGAAAGATGATTAACCAGGAGACCTTCTTACGACAGCAAATTGACAAAGTCCGGGAGCATATCAGAAAGCAAAGAAGAGACAATCGAGAAAATGAGATCACTCAAGTTTTGAAGAAGGTGGGTGAGATAACCATTCTTTGTGACATCAAGGTGGCGGCGATCATCTATATCCCCTTTGACTCCAAGCCGGAGGTGTTCCCAAGTCATCCGGAAGTCCACAAACTGTTAACAAAGTTCCAAGATATGCCGCAGATGGACAAGACAAGAGAGATGGTTGACCAAAAGACATTCTATGACAACGAATTGACAAAATTCGGGAGCAGATCAAAAAGCAAAGAAGAGACAACCGAGAAAAGGAGATCACTCAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

204

Amino Acids

24.37

Weight (kDa)

9.67

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.6e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccIII	TCCGGA	2 cut(s)	184, 448
AciI	CCGC	3 cut(s)	224, 395, 488
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	199, 594
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	5 cut(s)	13, 35, 254, 312, 575
Aor13HI	TCCGGA	2 cut(s)	184, 448
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	28, 110, 374
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	163
BccI	CCATC	2 cut(s)	487, 505
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	224, 396, 488
BlsI	GCNGC	3 cut(s)	225, 397, 489
Bme1390I	CCNGG	2 cut(s)	257, 293
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	257, 293
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	327, 590
BpuMI	CCSGG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	254
BsaWI	WCCGGW	2 cut(s)	184, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 594
Bse3DI	GCAATG	1 cut(s)	30
BseAI	TCCGGA	2 cut(s)	184, 448
BseBI	CCWGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	181, 445
BseLI	CCNNNNNNNGG	2 cut(s)	199, 594
BseMI	GCAATG	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	185, 292, 428, 449
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	199, 594
BsmAI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	254
Bsp13I	TCCGGA	2 cut(s)	184, 448
Bsp143I	GATC	5 cut(s)	135, 336, 399, 563, 599
BspACI	CCGC	3 cut(s)	224, 395, 488
BspANI	GGCC	1 cut(s)	81
BspEI	TCCGGA	2 cut(s)	184, 448
BspLI	GGNNCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	30
BssMI	GATC	5 cut(s)	135, 336, 399, 563, 599
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	2 cut(s)	310, 573
BstF5I	GGATG	2 cut(s)	181, 445
BstKTI	GATC	5 cut(s)	138, 339, 402, 566, 602
BstMAI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BstMBI	GATC	5 cut(s)	135, 336, 399, 563, 599
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	255, 291
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	181, 445
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	5, 81, 147, 163, 427
CviKI_1	RGCY	5 cut(s)	5, 81, 147, 163, 427
DpnI	GATC	5 cut(s)	137, 338, 401, 565, 601
DpnII	GATC	5 cut(s)	135, 336, 399, 563, 599
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	310, 573
EarI	CTCTTC	2 cut(s)	310, 573
Eco147I	AGGCCT	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	197
FaiI	YATR	8 cut(s)	140, 142, 195, 221, 300, 408, 485, 534
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	224, 396, 488
FokI	GGATG	2 cut(s)	168, 432
Fsp4HI	GCNGC	3 cut(s)	224, 396, 488
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	224, 396, 488
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	4 cut(s)	185, 292, 428, 449
Hin1II	CATG	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	468, 517
HindII	GTYRAC	2 cut(s)	468, 517
HinfI	GANTC	1 cut(s)	419
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	4 cut(s)	185, 292, 428, 449
HphI	GGTGA	3 cut(s)	28, 110, 374
Hpy166II	GTNNAC	3 cut(s)	457, 468, 517
Hpy188I	TCNGA	4 cut(s)	49, 87, 215, 305
Hpy188III	TCNNGA	5 cut(s)	130, 185, 326, 449, 556
Hpy8I	GTNNAC	3 cut(s)	457, 468, 517
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	6 cut(s)	3, 7, 85, 92, 274, 349
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	197
Kpn2I	TCCGGA	2 cut(s)	184, 448
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	5 cut(s)	135, 336, 399, 563, 599
LmnI	GCTCC	2 cut(s)	295, 558
LpnPI	CCDG	7 cut(s)	149, 198, 242, 269, 305, 441, 462
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	116, 202, 380
MalI	GATC	5 cut(s)	137, 338, 401, 565, 601
MboI	GATC	5 cut(s)	135, 336, 399, 563, 599
MboII	GAAGA	5 cut(s)	100, 163, 327, 364, 590
MluCI	AATT	3 cut(s)	279, 542, 551
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	2 cut(s)	160, 424
MroI	TCCGGA	2 cut(s)	184, 448
MseI	TTAA	2 cut(s)	252, 467
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	4 cut(s)	185, 292, 428, 449
MspR9I	CCNGG	2 cut(s)	257, 293
MvaI	CCWGG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	5 cut(s)	135, 336, 399, 563, 599
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	116, 380
PceI	AGGCCT	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	225, 397, 489
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	252, 467
SatI	GCNGC	3 cut(s)	224, 396, 488
Sau3AI	GATC	5 cut(s)	135, 336, 399, 563, 599
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	257, 293
SetI	ASST	9 cut(s)	18, 96, 129, 165, 171, 266, 360, 393, 435
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	342, 605
SmoI	CTYRAG	2 cut(s)	342, 605
Sse9I	AATT	3 cut(s)	279, 542, 551
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	3 cut(s)	224, 395, 488
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	255, 291
TaaI	ACNGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	325
TasI	AATT	3 cut(s)	279, 542, 551
TauI	GCSGC	3 cut(s)	226, 398, 490
Tru1I	TTAA	2 cut(s)	252, 467
Tru9I	TTAA	2 cut(s)	252, 467
TseFI	GTSAC	2 cut(s)	116, 380
Tsp45I	GTSAC	2 cut(s)	116, 380
TspDTI	ATGAA	1 cut(s)	210
Tth111I	GACNNNGTC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	551
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.